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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0270900 |
| Transcript ID | LotjaGi5g1v0270900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT3G54850.1 plant U-box 14; Swiss-Prot: sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14; TrEMBL-Plants: tr|I1NHI3|I1NHI3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0270900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58425603..58426825) extracted from Lotus japonicus Gifu genome v1.2.
CCCATATCTCTTGAACTAATGAAAGATCCTGTCATTGTCTCCACTGGTCAGGTATTATCAAAGATTGGCCGTGTGTGCGT GTGGTACTGTTATAATATATCAGCTATGATTATTCATTAGCTTTCTTCTCTCTTTTGCAGACATATGAAAGATGCTGCAT TCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCCAAGACACAGCAGACACTTCTGCACACAGCCCTTACTCCTAATT ATGTTTTAAAGAGTCTGATAGCTTTATGGTGTGAAAGCAATGGTGTTGAGCTACCAAAGAAACAAGGGAGCTGTAGAACA AAGAAATCTGGAACCAGTCTTTCAGATTGCGACAAAACTGGTATCAGCGCTTTATTGGATAAACTAGCAAGTACCGATAT AGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCGGATAACAGAGTGTGTATTGCTGAGG CAGGAGCAATACCACTTCTTGTAGATTTGTTGTCTTCTGTAGATCCTCGAACTCAGGAGCATGCTGTCACGGCCCTTCTC AATCTCTCAATCAACGAGAGTAACAAAGGAACTATAGTGAATGCCGGAGCTATACCGGATATTGTGGATGTACTGAAAAA TGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACCCTCTTCAGTTTATCTGTTCTAGATGAGAACAAGGTTGCAATAG GTGCAGCTGGAGCTATCCCAGCTCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCT ATCTTTAATCTGTCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCCGGTATAGTGGCCCCGCTGATACAATTTCT GAGGGATGCTGGGGGAGGGATGGTGGATGAAGCACTAGCTATAATGGCAATCCTTTCAAGCCATCATGAAGGCAGGATGG CAGTCGGTCAGGCTGAGCCAATCCCTATTCTAGTCGAGGTTATACGAACAGGGTCTCCGCGCAACCGGGAGAATGCTGCT GCTGTCTTGTGGTCGCTATGTACAGGAGATTTGCTGCAGTTGAAACTAGCAAAGAAACATGGTGCAGAAGAAGCGCTGCA GGAATTATCAGAAAATGGAACTGATAGAGCTAAGAGGAAAGCTGGAAGTTTATTAGAACTAATACAGCGAATGGAGGGGG AGGACACTTTGCAAGAATCATAA
CDS sequence (LotjaGi5g1v0270900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGATCCTGTCATTGTCTCCACTGCTTTCTTCTCTCTTTTGCAGACATATGAAAGATGCTGCATTCAAAAATGGCT TGATGCTGGTCACAGAACCTGCCCCAAGACACAGCAGACACTTCTGCACACAGCCCTTACTCCTAATTATGTTTTAAAGA GTCTGATAGCTTTATGGTGTGAAAGCAATGGTGTTGAGCTACCAAAGAAACAAGGGAGCTGTAGAACAAAGAAATCTGGA ACCAGTCTTTCAGATTGCGACAAAACTGGTATCAGCGCTTTATTGGATAAACTAGCAAGTACCGATATAGAACAGCAAAG GGCGGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCGGATAACAGAGTGTGTATTGCTGAGGCAGGAGCAATAC CACTTCTTGTAGATTTGTTGTCTTCTGTAGATCCTCGAACTCAGGAGCATGCTGTCACGGCCCTTCTCAATCTCTCAATC AACGAGAGTAACAAAGGAACTATAGTGAATGCCGGAGCTATACCGGATATTGTGGATGTACTGAAAAATGGCAGCATGGA GGCTAGAGAAAATGCAGCTGCAACCCTCTTCAGTTTATCTGTTCTAGATGAGAACAAGGTTGCAATAGGTGCAGCTGGAG CTATCCCAGCTCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAATCTG TCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCCGGTATAGTGGCCCCGCTGATACAATTTCTGAGGGATGCTGG GGGAGGGATGGTGGATGAAGCACTAGCTATAATGGCAATCCTTTCAAGCCATCATGAAGGCAGGATGGCAGTCGGTCAGG CTGAGCCAATCCCTATTCTAGTCGAGGTTATACGAACAGGGTCTCCGCGCAACCGGGAGAATGCTGCTGCTGTCTTGTGG TCGCTATGTACAGGAGATTTGCTGCAGTTGAAACTAGCAAAGAAACATGGTGCAGAAGAAGCGCTGCAGGAATTATCAGA AAATGGAACTGATAGAGCTAAGAGGAAAGCTGGAAGTTTATTAGAACTAATACAGCGAATGGAGGGGGAGGACACTTTGC AAGAATCATAA
Protein sequence (LotjaGi5g1v0270900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDPVIVSTAFFSLLQTYERCCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGSCRTKKSG TSLSDCDKTGISALLDKLASTDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVDLLSSVDPRTQEHAVTALLNLSI NESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNL SIYQGNKARAVKAGIVAPLIQFLRDAGGGMVDEALAIMAILSSHHEGRMAVGQAEPIPILVEVIRTGSPRNRENAAAVLW SLCTGDLLQLKLAKKHGAEEALQELSENGTDRAKRKAGSLLELIQRMEGEDTLQES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 366 | 366 | 3.7E-189 | – | |
| SUPERFAMILY | 1 | 68 | 68 | 1.92E-17 | – | |
| Gene3D | 1 | 66 | 66 | 9.8E-17 | ||
| PANTHER | 1 | 366 | 366 | 3.7E-189 | – | |
| CDD | 1 | 39 | 39 | 9.79673E-17 | – | |
| SMART | 1 | 59 | 59 | 5.0E-14 | ||
| Pfam | 1 | 63 | 63 | 1.6E-8 | ||
| ProSiteProfiles | 1 | 66 | 66 | 26.459 | ||
| SUPERFAMILY | 86 | 364 | 279 | 8.45E-49 | ||
| Gene3D | 91 | 206 | 116 | 1.6E-27 | ||
| SMART | 120 | 160 | 41 | 2.5E-6 | ||
| Pfam | 120 | 159 | 40 | 6.1E-11 | ||
| ProSiteProfiles | 131 | 173 | 43 | 13.527 | ||
| SMART | 161 | 201 | 41 | 0.038 | ||
| ProSiteProfiles | 172 | 214 | 43 | 9.327 | ||
| SMART | 202 | 242 | 41 | 0.01 | ||
| Pfam | 203 | 241 | 39 | 8.6E-7 | ||
| Gene3D | 207 | 366 | 160 | 4.7E-26 | ||
| SMART | 243 | 283 | 41 | 170.0 | ||
| SMART | 284 | 324 | 41 | 20.0 | ||
| Coils | 328 | 348 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi5g1v0270900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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