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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0270900 |
| Transcript ID | LotjaGi5g1v0270900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT3G54850.1 plant U-box 14; Swiss-Prot: sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14; TrEMBL-Plants: tr|I1LCX7|I1LCX7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0270900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58425603..58427789) extracted from Lotus japonicus Gifu genome v1.2.
AATTCTGAAATTTAATTGCAGAAATATCCAATAACTTAAGCAAGTGTTCTTGAATTTGAAGCACTGGAAAGTTAATCGTG GTTGAATATCGTTAAAATTAAGTAATTGGAGTAAGAGAATTAAGTACTAGCTGACTTCAAATTTCATTGTGGTTTAATAT TCTTAAAATTGGAGTTAGAGAATAAGAGATTAGTATTACAAATTCTGCAGATGTTCTATGCCTTCTGATGCAGTTTTGTT TACCAAGTATGTTTGATGATCAAGATTGTTAATTTTAATCTATCAGTGCTTTGCATATCACAGGCTTTGAGGAGGAATGA TACAATAGATAAGTTCCAAAAAATAACTGAAAAAATTGAAGCTGCGTTGAGTGAAATTTCATACAACAAACTTGAGATAT CAGAGGAAGTTCAAGAACAGGTAATTATACAATTACATGGTGATTCAAACCTTTTCCTGTCATTTGTTATAATCATATTT AATCAGTGTGCTTTTTTACTTCTGCAAGAGATGTTTTGGGCAGAAATAAGGAGCAGCAGTAGCATCAATTGACAGATAAT TATGTGCCATATTTCTCACAATTTTTTATTTCCTTTTTCAGATTGAACTGGTGCATGCTCAATTTAAAAGAGCTAAAGAT CAAACAGAGTTTGCTGATTTACAACTAGACTTGGATATGGCAGTGGCACAAAAGGAGAAAGACCCCGATCCTGCTATACT CAAAAGACTTTCGGAGAAGTTGCATTTGAGGACTATAAATGACCTAAAGAAAGAGTCTAGTGAACTACATGAATTGGTGA TCACAAGCGATGGAGAAGTGGAGGAATGTCTTGAAACGATCTCATCCCTTCTTAGGAAGCTGAAGGACTCTGTGTCCACA GAAAATCCTGAAGTTGATACCTCTGAATGTGAAAAAGGGTCAATTAAGCACCGGTCTCCTGTAATCCCCGATGATTTTCG ATGTCCCATATCTCTTGAACTAATGAAAGATCCTGTCATTGTCTCCACTGGTCAGGTATTATCAAAGATTGGCCGTGTGT GCGTGTGGTACTGTTATAATATATCAGCTATGATTATTCATTAGCTTTCTTCTCTCTTTTGCAGACATATGAAAGATGCT GCATTCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCCAAGACACAGCAGACACTTCTGCACACAGCCCTTACTCCT AATTATGTTTTAAAGAGTCTGATAGCTTTATGGTGTGAAAGCAATGGTGTTGAGCTACCAAAGAAACAAGGGAGCTGTAG AACAAAGAAATCTGGAACCAGTCTTTCAGATTGCGACAAAACTGGTATCAGCGCTTTATTGGATAAACTAGCAAGTACCG ATATAGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCGGATAACAGAGTGTGTATTGCT GAGGCAGGAGCAATACCACTTCTTGTAGATTTGTTGTCTTCTGTAGATCCTCGAACTCAGGAGCATGCTGTCACGGCCCT TCTCAATCTCTCAATCAACGAGAGTAACAAAGGAACTATAGTGAATGCCGGAGCTATACCGGATATTGTGGATGTACTGA AAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACCCTCTTCAGTTTATCTGTTCTAGATGAGAACAAGGTTGCA ATAGGTGCAGCTGGAGCTATCCCAGCTCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTAC TGCTATCTTTAATCTGTCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCCGGTATAGTGGCCCCGCTGATACAAT TTCTGAGGGATGCTGGGGGAGGGATGGTGGATGAAGCACTAGCTATAATGGCAATCCTTTCAAGCCATCATGAAGGCAGG ATGGCAGTCGGTCAGGCTGAGCCAATCCCTATTCTAGTCGAGGTTATACGAACAGGGTCTCCGCGCAACCGGGAGAATGC TGCTGCTGTCTTGTGGTCGCTATGTACAGGAGATTTGCTGCAGTTGAAACTAGCAAAGAAACATGGTGCAGAAGAAGCGC TGCAGGAATTATCAGAAAATGGAACTGATAGAGCTAAGAGGAAAGCTGGAAGTTTATTAGAACTAATACAGCGAATGGAG GGGGAGGACACTTTGCAAGAATCATAA
CDS sequence (LotjaGi5g1v0270900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTGCATATCACAGGCTTTGAGGAGGAATGATACAATAGATAAGTTCCAAAAAATAACTGAAAAAATTGAAGCTGC GTTGAGTGAAATTTCATACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTGGTGCATGCTCAATTTA AAAGAGCTAAAGATCAAACAGAGTTTGCTGATTTACAACTAGACTTGGATATGGCAGTGGCACAAAAGGAGAAAGACCCC GATCCTGCTATACTCAAAAGACTTTCGGAGAAGTTGCATTTGAGGACTATAAATGACCTAAAGAAAGAGTCTAGTGAACT ACATGAATTGGTGATCACAAGCGATGGAGAAGTGGAGGAATGTCTTGAAACGATCTCATCCCTTCTTAGGAAGCTGAAGG ACTCTGTGTCCACAGAAAATCCTGAAGTTGATACCTCTGAATGTGAAAAAGGGTCAATTAAGCACCGGTCTCCTGTAATC CCCGATGATTTTCGATGTCCCATATCTCTTGAACTAATGAAAGATCCTGTCATTGTCTCCACTGGTCAGACATATGAAAG ATGCTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCCAAGACACAGCAGACACTTCTGCACACAGCCCTTA CTCCTAATTATGTTTTAAAGAGTCTGATAGCTTTATGGTGTGAAAGCAATGGTGTTGAGCTACCAAAGAAACAAGGGAGC TGTAGAACAAAGAAATCTGGAACCAGTCTTTCAGATTGCGACAAAACTGGTATCAGCGCTTTATTGGATAAACTAGCAAG TACCGATATAGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCGGATAACAGAGTGTGTA TTGCTGAGGCAGGAGCAATACCACTTCTTGTAGATTTGTTGTCTTCTGTAGATCCTCGAACTCAGGAGCATGCTGTCACG GCCCTTCTCAATCTCTCAATCAACGAGAGTAACAAAGGAACTATAGTGAATGCCGGAGCTATACCGGATATTGTGGATGT ACTGAAAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACCCTCTTCAGTTTATCTGTTCTAGATGAGAACAAGG TTGCAATAGGTGCAGCTGGAGCTATCCCAGCTCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCT GCTACTGCTATCTTTAATCTGTCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCCGGTATAGTGGCCCCGCTGAT ACAATTTCTGAGGGATGCTGGGGGAGGGATGGTGGATGAAGCACTAGCTATAATGGCAATCCTTTCAAGCCATCATGAAG GCAGGATGGCAGTCGGTCAGGCTGAGCCAATCCCTATTCTAGTCGAGGTTATACGAACAGGGTCTCCGCGCAACCGGGAG AATGCTGCTGCTGTCTTGTGGTCGCTATGTACAGGAGATTTGCTGCAGTTGAAACTAGCAAAGAAACATGGTGCAGAAGA AGCGCTGCAGGAATTATCAGAAAATGGAACTGATAGAGCTAAGAGGAAAGCTGGAAGTTTATTAGAACTAATACAGCGAA TGGAGGGGGAGGACACTTTGCAAGAATCATAA
Protein sequence (LotjaGi5g1v0270900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCISQALRRNDTIDKFQKITEKIEAALSEISYNKLEISEEVQEQIELVHAQFKRAKDQTEFADLQLDLDMAVAQKEKDP DPAILKRLSEKLHLRTINDLKKESSELHELVITSDGEVEECLETISSLLRKLKDSVSTENPEVDTSECEKGSIKHRSPVI PDDFRCPISLELMKDPVIVSTGQTYERCCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGS CRTKKSGTSLSDCDKTGISALLDKLASTDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVDLLSSVDPRTQEHAVT ALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDA ATAIFNLSIYQGNKARAVKAGIVAPLIQFLRDAGGGMVDEALAIMAILSSHHEGRMAVGQAEPIPILVEVIRTGSPRNRE NAAAVLWSLCTGDLLQLKLAKKHGAEEALQELSENGTDRAKRKAGSLLELIQRMEGEDTLQES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 533 | 527 | 2.3E-253 | – | |
| PANTHER | 7 | 533 | 527 | 2.3E-253 | – | |
| Coils | 39 | 59 | 21 | - | – | |
| SUPERFAMILY | 155 | 235 | 81 | 1.44E-30 | – | |
| ProSiteProfiles | 159 | 233 | 75 | 42.09 | ||
| Gene3D | 160 | 233 | 74 | 1.4E-28 | ||
| Pfam | 160 | 230 | 71 | 1.5E-20 | ||
| SMART | 163 | 226 | 64 | 2.3E-34 | ||
| CDD | 164 | 206 | 43 | 2.27661E-28 | – | |
| SUPERFAMILY | 253 | 531 | 279 | 2.57E-48 | ||
| Gene3D | 258 | 373 | 116 | 3.6E-27 | ||
| SMART | 287 | 327 | 41 | 2.5E-6 | ||
| Pfam | 287 | 326 | 40 | 9.9E-11 | ||
| ProSiteProfiles | 298 | 340 | 43 | 13.527 | ||
| SMART | 328 | 368 | 41 | 0.038 | ||
| ProSiteProfiles | 339 | 381 | 43 | 9.327 | ||
| SMART | 369 | 409 | 41 | 0.01 | ||
| Pfam | 370 | 408 | 39 | 1.4E-6 | ||
| Gene3D | 374 | 532 | 159 | 1.1E-25 | ||
| SMART | 410 | 450 | 41 | 170.0 | ||
| SMART | 451 | 491 | 41 | 20.0 | ||
| Coils | 495 | 515 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi5g1v0270900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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