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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0272200 |
| Transcript ID | LotjaGi5g1v0272200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT2G16390.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|Q9SIW2|CHR35_ARATH Protein CHROMATIN REMODELING 35; TrEMBL-Plants: tr|I1LVC4|I1LVC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0272200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58566656..58572605) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTAATGTAAGAATTGGCATGAACCATTTCCCTTGTCTCCGACACACTCTCCCCCTTCCAACACACACACACACTC TCCGATCAAAATTCTGCATTTTTCTCTTCTTCAATGGAGGCAGCAGTTGATGTACTAGCACCTAAACGTCCCGCTCCAAG TGGTATTCTTCATTCCCTTCTCAAAAGTTTTTATCTTTTTCTTTTTTTCTATTAATTATTTTCCTTAATGCTGATAATCA GGTACATGCCACTATGTATTTTGTGTTTTTTCAGCTGCATGCATTTTCATTTCCTTCCTCTCTAGTCAATTGTTTTCTCT GAATTTCTGTTGTGCACGTTAAAGTTGTGTCCTTTTCACTTATTCAATTCTGTTTTCTGATCAAACAATGCTTGCTTTGA TGATTGATATAATGTAACTTTGTGGGTGGCATTTGTATCTGTAATTTGTTTGCAACTTGCAACCTTTTTTTGTTACTGAG TGTGCTTCAAGGGTGTACTGAGACTGCCCGAGAACCCGTATTGCTCTAGCCATGGTTTGGTTGTTTACTGATTGGGGGTG GGGGTGTGGGCTGAGAAGTGATCATAATTGGAGTAATGCCCTTAGAGTGTTTGATTTAGAGGGGTAGGGTTTGAGAATCA AATGGTATGGAATCATGTGTTGGGTGCTGAATTCTCCGAACGTTTATATTTAATAAGTTTATTTTGTTTGGTGAGCTGCT CAATGAAGTTCAAACTGCATTCGTGTATGTAGGATCGCGTTTATGTCCAACTAAATTATACAAGTCTTAAGAATATTTGC TTTTGCTGCTCTACTTGTATTTCGTTTCCTCAGGATGCATGCATTTAGTGGATTATATGGATTATGGAATTGCTTAATAT TCAGTATAGAACACTTGCAAGGGATATCTCTAGTTTCTGGAATATAGTTTCTGTCATCTCTCCCATTAATAAATTTAATT TATCTATTTATTCATGTCTTTCAAATTGTTTAATTTCCAGATTATTTGCAGCAAAAAATACATTTATGGATGTTAGTATC ATATAGATGTTGACAATCTTCATTTTCTGAATCCAGGAATTTCTCCTCAGGGACATAAAAGACTGAAACTGTCCAGTGAT AGTCTGCCATACTCAGCACATGATAAAGCTGTACCGGAGGCACCTACAAATGTTGAAGACTTCAGCAATCCATTTGCAAT CTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAGTTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAACCCGAAAAA TGCAAGTACTGGGCCCTTTCTTTGCAAAATTTCCTAAACTTGTTACTCAATCATTAAAAGTGGTTGTGAACCACGGTGAA GAAAGTAATAAGTTGGAAAATAAAAAAGGTACCATCATGTCACATGATAAAGTAATAGATTTGGAAGAGGAGCGCACTAA AAAGGATGCTTCTGCAGTACAGCCTGTTGTGATTATTGATTCGGATGAGGAAGATGATAGAGATAAAAATTCTTCTTCTC TTCCATTTAATGAAGTAATGTTTCCGAACTCCCTCCAATCTCCTGCATTGAGGATGATGGTAAGTTCCCCTGGTTTTGTG ATTCTTGACATATGTGAGCTCTGTGAGCTTTTATTTGGATTAGTGGCATGTTTTCTCCTAGGATGATTTGAAGGAACTTT AGTATTTCATTTTAACACATGTGGCAGAAGATTATAAATATATCATTGGCTCTTTCTTGATTATTATTTGTCCCTTAATT GTTATTTTAAAAATATATTGCCCTTTTATTTTCATAAGTATAAAGCAGAATCTTCTGGCTTTATAGGGTTAATTATGTAA TTTATATATCCATCGTCTATATATGATTCATTCTATCTTTTTTTACTCCTCGAATTATTATGTGTGCCATTATATATAAC TTACCAACATACATCTTTGGCTTTATTCTGTAAAAATAGGCGTATTATTGGCTGGCCTAAATGTTGCTTTTAGCTGTTGC AGAAGGTTTCTCCATTGAACCATGTACATGTTTTCAGCTCTTTACCCAACATTTTTAATAATTACAGAGATCTGATCACC ATTCTACAGAATTCTGAAAGTTATCTGATTTTATTTAACCACATTAAAGTTTCTTCTTTGTGTAAAAGGCTCATATGACT GAAATGCAGCATTAGAAAAAATTACTGTGTTGAAGAGTCAAGTGAAATTTTGAAGCATTCTAAATCCCTTGCTATCTCAA CACTGCATAGTTCTCTTAAAAACAAGTGCTTAATTTCTAGTGCCATGGCGTAATTCTATGTTAGATCTTTATAAGTTTCA CCGAAGTCTGACATTTTGTAATTGTTGGCTGTCTTGCTAAACTTAAATGTTTCTACACCATATAAAGTTTCCTGTACCTT TGGTGATAAGTTTGGTACTCATGCAAATGATGATACAAAAAATAAAAATCATGGACATATTTGGATTTATATTTTTCTAA ATGGTTTGCTATTTTCTGTCTTCCTTTTTAATTCTTTACTCGTAATATGCACACCCTTAATGTTGAAACATGAATAGTGT ATTAGTTTAGATGGAGTTTTCAATTTTTTTGTCAGAGCGTGTTGTGTTAATATTCTTCATATAGATTATTAGATGTGTGT TTTGGTAGATTCCTTTGTAACATTCTGTATATTTGGATTGAAATTTCCCTTTTTATTTTTCAATGCAAGTTGGTTCACTG ACATGCTTTATAATTCGCTGTGCATCAATTCTTTATAGGGGTATCGTGCTCCCATTGCTTACCATGGAGAAAGTGAAGAT CCTAAATTTGAGCCAACTCGGGCTGCTAAAGATAAAACTCAGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGGAAGA TGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAAATGTCAATGGCCGTAGAATGTTCGAAGGTATGTT TACTTTAACTTGTTTTCACATTTCAGTAAGAATAACTGTCTTTGTCAATTCGTTATATCTTCTACTCATCGGTTCCTTCT TTCATGTCATTTCATTGGTACTTGTACTAGGATGCTTCTGTGAATCCTCCACCTGAGGAAGAAGTTGAAAAAGAAGACGA CTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTCATTGACCGAGGAATTGAAA CCATATTTGAGTTCCAGTACAAGGTTAGACTCTTGTCTCAATGTTAATGATTTTTATGTTATAAATCTTGGTCATAAAAT AGTTATTGTGAAATTGAGTTTCTTAAGTATGCGGCTTGAAATTGGATTTGTAGATTGAATGTTTGACTCAGGACATAACA GTGCTTAAATTAAAACAGTTAGAAATGTGTTCCAAAAACTCTTCTGATAGTTTATGGTTTCCTCTTTTTCTTTTGTGGGA AAATAGGTGATTTGTTTGATTCAACTTCATAATGCACTCAAGAACTTCTTTACTGAACCATAATAATATAATAGCAGGCA GGACATATTTATTATTTGGGCTCAATTTCTTTGTAAAACACTGCCTAGTTCATAAGTCTGTATGTTCTGGACTAAAACAT GAGATTACTTATAGCTGGGGACAGCGAGTGATCAAAAATGATTTTTTATTCTTATTTTCTTATTGAAGGTTAAAAGGAGC ACAAGAACTTACATGGCTGATTCATGGAATGCCAAAACAAAAGTTGATGTATATGGAATTAATATTGCTGAAGATGACAT CATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAACAAATGAAGTCTCATCAAATTGAAGGGTTCAATTTTCTCG TTAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATC AGTTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTGGTGGTGCTTCCCAAGGGAATACTATCTACTTG GAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTATGATTTTTATACTGTGAAGGCAGACAGTAGATCAC AGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTTTCTTGGGGTACAAGCAGTTCTCTTCAATTGTC TGTGATGATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTGCTTAAGGTACCTTCAATTCTCATTTTAGATGA AGGACATAATCCGCGGAATGAGAATACCGATATGGTGCAGTCCCTTGCAAAGGTAAAAACACCTAGAAAAGTTGTATTGT CAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGAATCTGGTTCGGCCAAAGTTTCTAAAGATGGAA ACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCAGGCAAGAAATCTTTCTATGATTTGGTGGAGGA CACTTTGCAGAAGGACCCAGATTTTAAAAGGAAAATAGCTGTTATTCAAGATTTGCGTGAGATGACGAGTAAGGTACTTC ACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACAGTGTTGCTTAAGCTGACCCCAAGACAG AAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTATGGGCAGTGCGCTGTATCTTCACCC TAGATTGATACCTGTTGCGGATAAATGTGCAGAAAACTCTGTATCTGACCAAGTGGTGGATGATTTAATAGAGAAGTTGG ATGTGAAAGATGGAGTGAAGTCAAAATTCTTCATGAACATTCTAAACTTTTGTGAATCTTCCAACGAGAAGCTTCTGGTG TTCAGCCAATATCTCCTACCTTTGAAATATTTAGAGAGGTTAGTTATGAAATGGAAAGGTTGGAGTTTTGGGAAAGAAAT GTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCATGAACAAATTCAACAATTCACCTGATGCTAAAA TCTTCTTTGGCTCAATCAAGGCTTGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGAGTACTCATTTTGGATGTTCAT CTGAATCCATCAGTTACTCGTCAAGCTATTGGCCGTGCATTCCGACCAGGACAGACAAAGAAGGTCTTTGTGTATCGATT GATAGCTGCTGACTCTCCAGAAGAGGACGATCACATTACTTGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAAT GGAATGAGTACTGTGGTGATAGAGCCTTCCAAGTTGAGACTGTTAGTGTCAATGAATGTGGTGATGAGTTCCTTGAGACT CCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGTTTGAGACCACTCTTCGTACCTTTTTGCACATCTTATAACA ATCATGCTGTTCTTCTTCACTAATACTTGTTTTATTTGTATGTCAGGTAGACTGTTGGCATTCAGATTCAGTGGACTTGG GTAGCAAATGTTTACTGCATTTATGGTACACATTTTTACCACTGTATTTTTTTGAAACAGAACAATGTAGACTGTAGACA GTGGCCTAATTGACTTGGTTGTCTTTGCTCTTTGTACACATGTGATCCATCTTCCTTACTCTTGTGTGAGTGGAGAGATG TACAGAGTATTAAACTTTCTTGACTTGTAATAATTGCAGTAATACTTGTAGTCTTTTATTTTGTGTTGCATCAGCTTATC TGGTTGAGATGCTAATACTAATATTGCTTTGCTTCAGGAGATATGTAGTCAAAATAATTAACTCAGTTTAAATTGAGATT ACTGTACTGTGTTGATGCTCATACAATATGTGATTTCAGCTTGTTGGCCGAATGAAAAAAATAAAACTTGCAAGCAGGAT GCATTTGCTTGCTGCATACAATGTGATAAG
CDS sequence (LotjaGi5g1v0272200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCAGCAGTTGATGTACTAGCACCTAAACGTCCCGCTCCAAGTGGAATTTCTCCTCAGGGACATAAAAGACTGAA ACTGTCCAGTGATAGTCTGCCATACTCAGCACATGATAAAGCTGTACCGGAGGCACCTACAAATGTTGAAGACTTCAGCA ATCCATTTGCAATCTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAGTTTGGAAGTGTCACAAAGGACATAGAGGCCCTT ATAACCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAATTTCCTAAACTTGTTACTCAATCATTAAAAGTGGTTGT GAACCACGGTGAAGAAAGTAATAAGTTGGAAAATAAAAAAGGTACCATCATGTCACATGATAAAGTAATAGATTTGGAAG AGGAGCGCACTAAAAAGGATGCTTCTGCAGTACAGCCTGTTGTGATTATTGATTCGGATGAGGAAGATGATAGAGATAAA AATTCTTCTTCTCTTCCATTTAATGAAGTAATGTTTCCGAACTCCCTCCAATCTCCTGCATTGAGGATGATGGGGTATCG TGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCCTAAATTTGAGCCAACTCGGGCTGCTAAAGATAAAACTCAGAGAG ATAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAA ATGTCAATGGCCGTAGAATGTTCGAAGGATGCTTCTGTGAATCCTCCACCTGAGGAAGAAGTTGAAAAAGAAGACGACTG TGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTCATTGACCGAGGAATTGAAACCA TATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCATGGAATGCCAAAACAAAAGTTGAT GTATATGGAATTAATATTGCTGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAACAAATGAA GTCTCATCAAATTGAAGGGTTCAATTTTCTCGTTAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATG CTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTG GTGGTGCTTCCCAAGGGAATACTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTATGA TTTTTATACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTT TCTTGGGGTACAAGCAGTTCTCTTCAATTGTCTGTGATGATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTG CTTAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCGCGGAATGAGAATACCGATATGGTGCAGTCCCTTGC AAAGGTAAAAACACCTAGAAAAGTTGTATTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGA ATCTGGTTCGGCCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCA GGCAAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCAGATTTTAAAAGGAAAATAGCTGTTATTCA AGATTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATT TTACAGTGTTGCTTAAGCTGACCCCAAGACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTA TCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGCAGAAAACTCTGTATCTGA CCAAGTGGTGGATGATTTAATAGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCAAAATTCTTCATGAACATTCTAAACT TTTGTGAATCTTCCAACGAGAAGCTTCTGGTGTTCAGCCAATATCTCCTACCTTTGAAATATTTAGAGAGGTTAGTTATG AAATGGAAAGGTTGGAGTTTTGGGAAAGAAATGTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCAT GAACAAATTCAACAATTCACCTGATGCTAAAATCTTCTTTGGCTCAATCAAGGCTTGTGGAGAGGGCATATCATTGGTTG GGGCATCCCGAGTACTCATTTTGGATGTTCATCTGAATCCATCAGTTACTCGTCAAGCTATTGGCCGTGCATTCCGACCA GGACAGACAAAGAAGGTCTTTGTGTATCGATTGATAGCTGCTGACTCTCCAGAAGAGGACGATCACATTACTTGTTTCAA GAAGGAATTGATTTCAAAGATGTGGTTTGAATGGAATGAGTACTGTGGTGATAGAGCCTTCCAAGTTGAGACTGTTAGTG TCAATGAATGTGGTGATGAGTTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGTAG
Protein sequence (LotjaGi5g1v0272200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAVDVLAPKRPAPSGISPQGHKRLKLSSDSLPYSAHDKAVPEAPTNVEDFSNPFAISDFLNRLESGKFGSVTKDIEAL ITRKMQVLGPFFAKFPKLVTQSLKVVVNHGEESNKLENKKGTIMSHDKVIDLEEERTKKDASAVQPVVIIDSDEEDDRDK NSSSLPFNEVMFPNSLQSPALRMMGYRAPIAYHGESEDPKFEPTRAAKDKTQRDKGVYVGVQEEDEVDTEDDGLDDIWRE MSMAVECSKDASVNPPPEEEVEKEDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNAKTKVD VYGINIAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPL VVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDDSTNSISISCQDIL LKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHIS GKKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKHETGKLKNISRKFKV SSMGSALYLHPRLIPVADKCAENSVSDQVVDDLIEKLDVKDGVKSKFFMNILNFCESSNEKLLVFSQYLLPLKYLERLVM KWKGWSFGKEMFGISGESSSEQREWSMNKFNNSPDAKIFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRP GQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFQVETVSVNECGDEFLETPMLGEDVKALYKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 39 | 876 | 838 | 0.0 | – | |
| PANTHER | 39 | 876 | 838 | 0.0 | – | |
| MobiDBLite | 194 | 214 | 21 | - | – | |
| Gene3D | 315 | 569 | 255 | 3.1E-47 | ||
| SUPERFAMILY | 327 | 541 | 215 | 3.82E-32 | ||
| SMART | 342 | 556 | 215 | 1.3E-13 | ||
| CDD | 346 | 554 | 209 | 3.34803E-77 | – | |
| Pfam | 349 | 545 | 197 | 5.5E-20 | ||
| ProSiteProfiles | 360 | 539 | 180 | 13.772 | ||
| SUPERFAMILY | 485 | 839 | 355 | 1.1E-37 | ||
| Gene3D | 609 | 857 | 249 | 1.2E-39 | – | |
| ProSiteProfiles | 669 | 853 | 185 | 11.092 | ||
| CDD | 675 | 812 | 138 | 1.35571E-38 | – | |
| Pfam | 690 | 800 | 111 | 1.3E-8 | ||
| SMART | 716 | 801 | 86 | 5.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0272200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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