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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0277100 |
| Transcript ID | LotjaGi5g1v0277100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0277100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59253707..59255181) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAAAGAGAAGGTTCATATCAACATTGTGGTCATTGGACATGTCGACTCCGGCAAGTCCACCACCACTGGCCACTT GATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAGGCCGCTGAGATGAACAAGAGGTCGT TCAAGTATGCGTGGGTTCTTGACAAATTGAAGGCTGAGCGTGAAAGAGGTATCACCATTGATATCGCTCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACAGTTATTGATGCTCCCGGCCACAGGGATTTCATCAAGAACATGATTACTGGAACTTC ACAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCC GTGAGCATGCTCTCCTCGCTTTCACTCTTGGTGTGAAGCAGATGATCTGTTGTTGTAACAAGGTATCTTAATTTGATTCT TTTGTATATTCTATTTGATTCATTTGTATATTCAATCTTGGTCTGAATTTTTTATCTTACATTTACTTCAATTGATTTGT TAATTATGTGCTGGTTTTAATTGTCTTGTACAGATGGATGCTACCACCCCCAAGTACTCAAAGGCTAGGTATGAAGAAAT CGTGAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGGTACAACCCTGACAAAATCCCCTTTGTTCCCATCTCTGGGTTCG AGGGAGACAACATGATTGAGAGGTCAACCAACCTTGACTGGTACAAGGGACCAACCCTTCTTGAGGCTCTTGACCAGATC AACGAGCCCAAGAGGCCCTCAGACAAGCCACTCAGGTTGCCCCTTCAGGACGTGTACAAGATTGGAGGCATTGGAACTGT GCCTGTGGGACGTGTTGAGACTGGTCTCATCAAGCCTGGTATGGTTGTGACTTTTGGCCCAACTGGTCTGACCACTGAAG TTAAGTCTGTTGAGATGCACCATGAAGCCCTTCAGGAGGCTCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAATGTT GCTGTGAAGGATCTCAAGCGTGGGTTTGTTGCCTCAAACTCCAAGGATGACCCTGCTAAGGAAGCTGCCAACTTCACCTC CCAGGTCATCATCATGAACCACCCTGGCCAGATCGGCAATGGCTATGCCCCAGTCCTTGATTGCCATACTTCCCACATTG CTGTGAAGTTCGGTGAAATCCTGACCAAGATTGACAGGCGATCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAG AATGGTGATGCTGGTATGGTTAAGATGCTTCCCACCAAGCCTATGGTTGTTGAAACTTTCTCTGAGTATCCTCCCCTTGG TCGTTTTGCTGTGAGGGACATGAGACAGACTGTTGCTGTTGGTGTCATCAAGAGCGTGGAGAAGAAGGACCCAACTGGAG CCAAGGTCACCAAGGCTGCTGCCAAGAAGAAGTGA
CDS sequence (LotjaGi5g1v0277100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAAGAGAAGGTTCATATCAACATTGTGGTCATTGGACATGTCGACTCCGGCAAGTCCACCACCACTGGCCACTT GATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAGGCCGCTGAGATGAACAAGAGGTCGT TCAAGTATGCGTGGGTTCTTGACAAATTGAAGGCTGAGCGTGAAAGAGGTATCACCATTGATATCGCTCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACAGTTATTGATGCTCCCGGCCACAGGGATTTCATCAAGAACATGATTACTGGAACTTC ACAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCC GTGAGCATGCTCTCCTCGCTTTCACTCTTGGTGTGAAGCAGATGATCTGTTGTTGTAACAAGATGGATGCTACCACCCCC AAGTACTCAAAGGCTAGGTATGAAGAAATCGTGAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGGTACAACCCTGACAA AATCCCCTTTGTTCCCATCTCTGGGTTCGAGGGAGACAACATGATTGAGAGGTCAACCAACCTTGACTGGTACAAGGGAC CAACCCTTCTTGAGGCTCTTGACCAGATCAACGAGCCCAAGAGGCCCTCAGACAAGCCACTCAGGTTGCCCCTTCAGGAC GTGTACAAGATTGGAGGCATTGGAACTGTGCCTGTGGGACGTGTCATCATCATGAACCACCCTGGCCAGATCGGCAATGG CTATGCCCCAGTCCTTGATTGCCATACTTCCCACATTGCTGTGAAGTTCGGTGAAATCCTGACCAAGATTGACAGGCGAT CTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGATGCTGGTATGGTTAAGATGCTTCCCACCAAGCCT ATGGTTGTTGAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGAGACAGACTGTTGCTGTTGG TGTCATCAAGAGCGTGGAGAAGAAGGACCCAACTGGAGCCAAGGTCACCAAGGCTGCTGCCAAGAAGAAGTGA
Protein sequence (LotjaGi5g1v0277100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKARYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD VYKIGGIGTVPVGRVIIMNHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMLPTKP MVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 7.5E-256 | – | |
| Gene3D | 1 | 228 | 228 | 6.2E-90 | – | |
| PANTHER | 1 | 255 | 255 | 7.5E-256 | – | |
| SUPERFAMILY | 3 | 249 | 247 | 5.35E-80 | ||
| ProSiteProfiles | 5 | 230 | 226 | 59.954 | ||
| Pfam | 6 | 222 | 217 | 5.9E-54 | ||
| PRINTS | 9 | 22 | 14 | 6.2E-24 | ||
| CDD | 9 | 227 | 219 | 1.90312E-158 | – | |
| ProSitePatterns | 61 | 76 | 16 | - | ||
| PRINTS | 68 | 76 | 9 | 6.2E-24 | ||
| PRINTS | 88 | 98 | 11 | 6.2E-24 | ||
| PRINTS | 104 | 115 | 12 | 6.2E-24 | ||
| PRINTS | 148 | 157 | 10 | 6.2E-24 | ||
| Gene3D | 229 | 255 | 27 | 2.0E-8 | – | |
| CDD | 254 | 349 | 96 | 2.87717E-63 | – | |
| Pfam | 254 | 352 | 99 | 2.7E-35 | ||
| SUPERFAMILY | 254 | 352 | 99 | 1.03E-38 | ||
| PANTHER | 255 | 369 | 115 | 7.5E-256 | – | |
| PANTHER | 255 | 369 | 115 | 7.5E-256 | – | |
| Gene3D | 256 | 353 | 98 | 4.9E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0277100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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