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LotjaGi5g1v0277900.2

Overview

Field Value
Gene ID LotjaGi5g1v0277900
Transcript ID LotjaGi5g1v0277900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT2G16880.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880; TrEMBL-Plants: tr|G7I9N3|G7I9N3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi5g1v0277900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:59317728..59323849) extracted from Lotus japonicus Gifu genome v1.2.

CGTCCTCATCAGTCTTGTTCCTCTGTCACCAAAAAACCCTGACAAACACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG AAGAAGAAGAAGATGATGATGAACCAGGAGGAACAACTGGTAGAAACCATAGCCAAAATCCTCCACAGTAACAAGAATCC ATCCAACTCCTTGAAGCGTTTCATCCCTCACCTCACCCTTCACCTCGCCGTCTCCATCCTCTCATGGGAGCCACTCCATT CTCGCCCCACCGCTCTCCTCTCCTTCTTCAAATGGCTCCAAACCCACGCTCCTCCCTCCCTCTCCGCCTCCCCTTACCTC CTCCTCACCCTCCTCCCTCCCCTCCTCCGCCACCACAAATTCTCCGACGCCAAGTCCCTCCTCCACAACTTCATCTCCTC CGACCGCCGCCACTCCCTCCATAACCTCCTCCTCCACCCCAACCGGACCCTTCCCACCATCCCAATATCACTCCTCGATA CCTCCCTCGCTGCCTATGTTCATGCCCGGAAGCCTCACCTTGCTTTCCAGATCTTCACCAAGATGAAACGATACCGTTTC CGACCCAACTTGCTCACCTGCAATACGCTTCTCAATGCCCTTGTAAGATCCTCTTCCTCTCAATCCATTCAGCTCTCCAC ACAGGTGTTTAACGATGCCATTATGCTCGGGGTTAAGCCCAATACAAACACTTTCAATATTTTGATATTTGGGTATTGTT CTGTTAGCAAGTTTGATCAAGCATTTGAGTTGATGAATAAGATGGGGGAGTTTGAGTGTTCCCCTGATCATGTCACCTAT AACACTTTACTGGATGCGTTATGCAAGAGGAGTCAGTTGGACAAGGTGAGGGAGTTGCTGCATGAGATGAAGGATAGCGG GTTGGTTCCGAATAAGAACACGTATAATATATTGGTTCATGGGTATTGCAGGTTGAAATGGCTTAAAGAAGCTGCTGAGG TTATTGAGTTGATGACAAGGAGTGGTATGTTGCCTGATATTTGGACTTATAATACAATGATGAGGGGTTTGTGTGACGAA GGGAAGATTGATGAGGCAATTAGGCTTAGAGATGAGATGGAGAGTTTGAAATTGGTTCCGGATGTTGTTACTTATAATAC CTTGATTGATGGGTGTTTTGAGTGTCGGGGCAGTGCTGAGGCGTTTAAGTTAGTTGAGGAGATGAAGTTGAGGGGGGTCA AGCCGAATGTGGTGACTTACAATATAATGGTTAAGTGGTATTGCAAGGAAGGTAAGACTGATGAAGCGAGCAAAGTCATG GCGAAGATGGTGGAGAGTGGGGTTTCTCCTAACTGCTTTACTTATAATACTATCATTAATGGTTATTGTAAACTGGGAAA GCTTGGGGAGGCGTTTAGGATGATGGAGGATATGGGAAGGAAGGGAATGAAAGCAGATACTTTCACTCTTAATACCATAT TACACATCTTGTGCATGGAGAAGAAGCTTAAAGATGCATATGAGTTAATTAAAAGTGCCTGGAAGCGAGGTTATATTCTT GATGAGGTAACCTATGGAACACTAATAATGGGGTACTTTAAGGATGACCAAGAAGACAAAGCTTTGAAGCTCTGGGATGA GATGAAGCAGAAAGGAATTGTTCCTAGTGTTGTCACTTATAACACTATAATAAGAGGGTTTTGCCTGTCTGGAAAAACTG ATCAAGCTGTAGATAAATTAAATGAGCTTCTAGAGAAGGGTTTGCTCCCTGATGAAGCTACATCTAACATAATTATTCAT GGTTACTGCTGGGAGGGATTGGTAGAAAAAGCATTTCAGTTCCATAACAAAATGATAGAGAAGTCATTCAAACCAGATAT CTTCACATGTAACATTCTTCTTCGAGGACTTTGCAAACATGGCATGCTGGAGAAAGCTCTTAAACTTTTTGACACATGGA TCTCTACAGGGAAGCCCATTGACGTAGTTACATACAACACATTGATATCGTTCCTTTGCAAAGAAGGGAGACTTGAAGAT GCATCTGATCTCGTGACTGAAATGGAGGGGAAAAATTTGGAGCCTGACCAGTATACTTATAATGCCATCATCAGCGGGCT TACTAAAGCTGGTAGAACTGAGGAAGCAGAAAAATTGGTGTCAAAACTCGTTGAGATAGGGCAAGATGTGAAAACCCAGG ACTCTTTTGGTTCAGGTGATATGACACGTTCAGAGCAAATAAGTAATTTGTGTACTCAGGGGAAGTACAAGGATGCGATG AAACTATTTCAAGATACAGAGCAGAAAGGAGTTAGCCTAAGTAAATACACATATATCAAACTGATGGATGGGCTCTTGAA GAGGCGAAAAAGCATATCGAATGTTGACCGATCTGATTGAAACAATAAATTGGATAGTTTTTTTGGGGGGGATTTGGATT TAGGATGTTCTTAATGTTGAATCCATTTGTGGAGGCAGTGTTGAGATGGAATTTAATTATTTCATGTAAGTTTCCATTCT CCACTTTGATAAATAGTTAGTTTAGTCAGCTTTGGTGATTATTTGGCCTTCTGCCTATGCATGCATTTGCGTTATTTTGT TGGTTCCTAGAAAATTATAAATGACTAAGTAGAAGTAGGAATTTTTTTTTTTTGTGTCATGTGAATTAACAGTATAAAAT TATCTAGGGCATAAATAGATATCTAATTGTCATAGCATATCTCATATGGGCGCTCATTTCAAATTTGTTTAGCTTATTGA TTTAATTCCAGGTTTTGTATGTTCAAAAAAGACTGAAGTGCTTGTACTATACCATAATGGACTGGCAGAAACTTTAATAA CTGGCTGATCAAATATGCTGGGTTGGTTTATTATGTGATTTCTGACCTGAATAAATATTGTTCAACACTATTTTGGCAAC AATCTGGTGTTTAATTGGTGGCTTGTCATTTCTTTCTTTACACTCCAGTGATATGGACTTTCTGGTTTCAGTTCTTGATT TGAGATAACAATTGATACATAGAATTGATGCAGGACTTATAACTGAGGTGGTACGTTTCTCAATGGAGCTTCAAGTACAT CTTCATTGTTGCTTCTCTTGAATGTATATGTTTGTTTCAAGCTTTTTTTCTTACATATGTGTGCACTTTTATTTTAATCC TTGATTGTTGGTTCTTGGTAAATGCAATGGTGTAGATTTGTAAAACTCTTTTCTGTTTCAACATTTAACAAATTATAAAA TACAAATAAACATTGTTGTAGTTGGCTATATGTAGGGTTTTCTTAGCTGGAATTGTCAGTGATAGGCAGATGGGTGCACC ACGCATGTCAAGATAATGAGGATTTGGAAGCCATGACATGGATGTTTGGAATGTCAAATTGGTGGTTATTTTGTGGTTCT GTAAAAGTTTTAAATTCTAAGGATTTAAGGAAAATTCTAGTAGGCAAGTATTAGTGTTTTAAAGGGAAGAGTTTTTATCG ACATGTTTGTCAAATTAGAAGAAATTGCATAGGCTCTCTGGGTTTTAAATGATTTATTTTAAATTAGGTTTATTTTCAAA TTATATTTGAAGAAGCCTTTTTGGTTGAGTGAGCTATAGATTGTATGAAGTTTTTAGTAGAAATGATTTTGGCACTTTTT GGAGAAGATGAATTATTGAATTTCTTTCAACTGCTACTTTCCTGTGACTGTGGATGGCAAAATTAAGTCTTTGTCTAAAT GTCAGCCGGGAGTCGGTCTAGGAGATCACTTATCCCCTAGAAGGATTCAGTTTGAACTTTGAATAAATATACATATAGCA AGATAGTGGATGGGCTATTGAACTGTTGAACAGCTAAAAGCATATAAAAGGTTGCCTGATCAGATTGACACAGTAAATTA GCTAGGTACTATTTATTTTGGCATTAGGATTTATGATACCCATAATGCTGCATTGTGTTTTAGATGCAATGTTCTGATTA TTATTGATTTCATGTAAGTGTGTTTTTTCCATAAGTAATTAATTTCAGTTTTTGTAACTACTTAAGCAAAATACTTTTTA TTGTCTTGGCCTATCTGTTCATGTCTTCTCTGGAATTTGTAGATGGGAACTGTAGTTGAAGTTTAAATTGAAGGAAGATT GCTAATTTTCCGGAAAGGGAATCTCTTATGGAACTATTCTTAAACTGCAATGGATGATCAGCGGACTCTTGATAAGGTTG GTCACAATTCATAATATTGCTGATATCAAGAGATATATTGTGAAATGTAAATTCAAAAATTAGTTTAAAAGTGGAAATTT GATTATAAATGCATGTTATTATGTACTTATAGTCTTCATTGTTCAACAAGAACCTTGGATTATGCTAAACATCGACGGAT CCTTATCTCAAAAGTGCCAGTCTGCTGCATTTGGAGTAGTCATCTGTGGCCACTGGGGATCCTTCCTTGTGGCCTTTTCA TGCAGCCTAGATTCGTGCTTTATCATGTAAGCATGGTTTGTGCGTATACTTATTGAATCTGTTGAAAATGCAATCTGTGC TTAATTGACTTTGGCTGCCCTGATGTTTACCCTTGTTTTAAATCATTCATGATCACCTATGGAATTTTGCACCAGTCTAG CTGTCCTTATACACCACAACAAACTGGTATAACTGAAAGTAAATATTGACACATTGTTGAGACTGCGTGTACACTCTTAT TGAATGAACATGCTCCTTTAAAGTTTTAGGGAGATGTTGTTCTTACTCTTGGATATTTAATAAGTAGGATGCCCTATGTT TTAGGCATTCAGATTTCTCATCCCTGTTGTTTCATGAGCCTCATTTTCCTATTACGTGTTTCTGGGGGTACTTTTTTTAT TCAGGATCTTTCTCCAGGATGAGAAAACCTGCTAACCCGTGCTATCAAGTGTGTTTTGCTATCGATCAGGTCAAGGCTAT TCCTATCTCGTAATTTTATTCCTTTGGTTGGTTTTGATCCTTAAGCTCCTTCATTTCAAGGAAGAGGATGGCCATGGCCT TCGGCATCCATAGTCTGTTTAATAAAACTCAGCTTTCAGATTTTTAGATTCTCTGTCTAACTCAGTTTCTTCTCTATCTC AGACTTTCTCTCACTTTTTTTGCATTTCTTACTTTACCTAAACCTAATACTAATTATAAATATGAATATATGACGCTTCT GATTTAATTTCTCACCCTCTTGTTCTGTTAACTATTAACTATCAATTTAAATTTATGAACATTGTCGCTAAATATTTGCA GCTATAATCTAGAAGAGACCAGACTTGGAAAAATCTTGATTTGGTATTTTCTGCTGTTGATAAGTAGCTTGATCAGGAAG GTGAAATTTCCACTTGAAGACAGCAGATAGTGATGATTTACACAACACACAAACATTCTTACTGTCTACCAGGATATTAA ATGTGTACCACTTGTGGATTCCGTGTTGATTAAGATCCTCTCATGTGACATCACAATGTTACGTAGAACATTGTGTCTAT CTCTTTTCATAAATATTCAAAGGGTATCATCTATTTAATACATACGAAGAGAGAGAGATAGATACAAAATTTCAACATGA AGGAACATGAGAGGATCCTGATCATTTCGTGTGGCGAAGGGGGGGACCTAAGAGGAGTGTAAATCATGTTATTGAATGGA ACAATTGAGCAATGAGGTTAAAAGTATTCTCAGTATGTCTCTTTTTCCCCTTGCTCTTGTTGGACACTATCTTCCCTTCA CATGTAAAAGACATGTATTTCAATTTTGGTTTTGTAACTGCTACTAATAATGCTCTGTTGCAAGTTTGATGGTCATAGGA TACAATTTATTGCAGGCCAAACAGTTAGTTGCCAATTGATTATTGATTCTTTTTCATTTGTACTTCAAACGCCGTTTAAA TTGACACAATCAGTTGTACTTCAATGATTATCTGCTGTTCAGTGATGGTTGGTATTGATTTCAGAAGTGGTTATTCTTTT CATATTTGAACTCTACAAGTTCAGTGTGTTTGACTGATCTCGTGCCTACCTAAATTAGATTACCTACGTTATATTTAGAA GAAACTCCTCAACTATATGTGGTAACCTTGTTCTAGCTATAGTTGTATTTCAAAAGTATCATGATGTGTATTGTGTTTCT AACACAATTTAGTACGAAATGTGATTGCTAAGTAACTTGGGA 

CDS sequence (LotjaGi5g1v0277900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGATGAACCAGGAGGAACAACTGGTAGAAACCATAGCCAAAATCCTCCACAGTAACAAGAATCCATCCAACTCCTT GAAGCGTTTCATCCCTCACCTCACCCTTCACCTCGCCGTCTCCATCCTCTCATGGGAGCCACTCCATTCTCGCCCCACCG CTCTCCTCTCCTTCTTCAAATGGCTCCAAACCCACGCTCCTCCCTCCCTCTCCGCCTCCCCTTACCTCCTCCTCACCCTC CTCCCTCCCCTCCTCCGCCACCACAAATTCTCCGACGCCAAGTCCCTCCTCCACAACTTCATCTCCTCCGACCGCCGCCA CTCCCTCCATAACCTCCTCCTCCACCCCAACCGGACCCTTCCCACCATCCCAATATCACTCCTCGATACCTCCCTCGCTG CCTATGTTCATGCCCGGAAGCCTCACCTTGCTTTCCAGATCTTCACCAAGATGAAACGATACCGTTTCCGACCCAACTTG CTCACCTGCAATACGCTTCTCAATGCCCTTGTAAGATCCTCTTCCTCTCAATCCATTCAGCTCTCCACACAGGTGTTTAA CGATGCCATTATGCTCGGGGTTAAGCCCAATACAAACACTTTCAATATTTTGATATTTGGGTATTGTTCTGTTAGCAAGT TTGATCAAGCATTTGAGTTGATGAATAAGATGGGGGAGTTTGAGTGTTCCCCTGATCATGTCACCTATAACACTTTACTG GATGCGTTATGCAAGAGGAGTCAGTTGGACAAGGTGAGGGAGTTGCTGCATGAGATGAAGGATAGCGGGTTGGTTCCGAA TAAGAACACGTATAATATATTGGTTCATGGGTATTGCAGGTTGAAATGGCTTAAAGAAGCTGCTGAGGTTATTGAGTTGA TGACAAGGAGTGGTATGTTGCCTGATATTTGGACTTATAATACAATGATGAGGGGTTTGTGTGACGAAGGGAAGATTGAT GAGGCAATTAGGCTTAGAGATGAGATGGAGAGTTTGAAATTGGTTCCGGATGTTGTTACTTATAATACCTTGATTGATGG GTGTTTTGAGTGTCGGGGCAGTGCTGAGGCGTTTAAGTTAGTTGAGGAGATGAAGTTGAGGGGGGTCAAGCCGAATGTGG TGACTTACAATATAATGGTTAAGTGGTATTGCAAGGAAGGTAAGACTGATGAAGCGAGCAAAGTCATGGCGAAGATGGTG GAGAGTGGGGTTTCTCCTAACTGCTTTACTTATAATACTATCATTAATGGTTATTGTAAACTGGGAAAGCTTGGGGAGGC GTTTAGGATGATGGAGGATATGGGAAGGAAGGGAATGAAAGCAGATACTTTCACTCTTAATACCATATTACACATCTTGT GCATGGAGAAGAAGCTTAAAGATGCATATGAGTTAATTAAAAGTGCCTGGAAGCGAGGTTATATTCTTGATGAGGTAACC TATGGAACACTAATAATGGGGTACTTTAAGGATGACCAAGAAGACAAAGCTTTGAAGCTCTGGGATGAGATGAAGCAGAA AGGAATTGTTCCTAGTGTTGTCACTTATAACACTATAATAAGAGGGTTTTGCCTGTCTGGAAAAACTGATCAAGCTGTAG ATAAATTAAATGAGCTTCTAGAGAAGGGTTTGCTCCCTGATGAAGCTACATCTAACATAATTATTCATGGTTACTGCTGG GAGGGATTGGTAGAAAAAGCATTTCAGTTCCATAACAAAATGATAGAGAAGTCATTCAAACCAGATATCTTCACATGTAA CATTCTTCTTCGAGGACTTTGCAAACATGGCATGCTGGAGAAAGCTCTTAAACTTTTTGACACATGGATCTCTACAGGGA AGCCCATTGACGTAGTTACATACAACACATTGATATCGTTCCTTTGCAAAGAAGGGAGACTTGAAGATGCATCTGATCTC GTGACTGAAATGGAGGGGAAAAATTTGGAGCCTGACCAGTATACTTATAATGCCATCATCAGCGGGCTTACTAAAGCTGG TAGAACTGAGGAAGCAGAAAAATTGGTGTCAAAACTCGTTGAGATAGGGCAAGATGTGAAAACCCAGGACTCTTTTGGTT CAGGTGATATGACACGTTCAGAGCAAATAAGTAATTTGTGTACTCAGGGGAAGTACAAGGATGCGATGAAACTATTTCAA GATACAGAGCAGAAAGGAGTTAGCCTAAGTAAATACACATATATCAAACTGATGGATGGGCTCTTGAAGAGGCGAAAAAG CATATCGAATGTTGACCGATCTGATTGA 

Protein sequence (LotjaGi5g1v0277900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMMNQEEQLVETIAKILHSNKNPSNSLKRFIPHLTLHLAVSILSWEPLHSRPTALLSFFKWLQTHAPPSLSASPYLLLTL LPPLLRHHKFSDAKSLLHNFISSDRRHSLHNLLLHPNRTLPTIPISLLDTSLAAYVHARKPHLAFQIFTKMKRYRFRPNL LTCNTLLNALVRSSSSQSIQLSTQVFNDAIMLGVKPNTNTFNILIFGYCSVSKFDQAFELMNKMGEFECSPDHVTYNTLL DALCKRSQLDKVRELLHEMKDSGLVPNKNTYNILVHGYCRLKWLKEAAEVIELMTRSGMLPDIWTYNTMMRGLCDEGKID EAIRLRDEMESLKLVPDVVTYNTLIDGCFECRGSAEAFKLVEEMKLRGVKPNVVTYNIMVKWYCKEGKTDEASKVMAKMV ESGVSPNCFTYNTIINGYCKLGKLGEAFRMMEDMGRKGMKADTFTLNTILHILCMEKKLKDAYELIKSAWKRGYILDEVT YGTLIMGYFKDDQEDKALKLWDEMKQKGIVPSVVTYNTIIRGFCLSGKTDQAVDKLNELLEKGLLPDEATSNIIIHGYCW EGLVEKAFQFHNKMIEKSFKPDIFTCNILLRGLCKHGMLEKALKLFDTWISTGKPIDVVTYNTLISFLCKEGRLEDASDL VTEMEGKNLEPDQYTYNAIISGLTKAGRTEEAEKLVSKLVEIGQDVKTQDSFGSGDMTRSEQISNLCTQGKYKDAMKLFQ DTEQKGVSLSKYTYIKLMDGLLKRRKSISNVDRSD 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 48 175 128 8.5E-8
PANTHER 51 325 275 5.9E-181
ProSiteProfiles 124 158 35 7.629
Pfam 132 171 40 9.4E-7
ProSiteProfiles 159 196 38 7.081
Gene3D 176 283 108 1.3E-31
Pfam 193 224 32 2.1E-10
ProSiteProfiles 197 231 35 11.093
TIGRFAM 200 232 33 1.2E-6
Pfam 231 280 50 4.1E-17
ProSiteProfiles 232 266 35 13.636
TIGRFAM 234 267 34 8.1E-11
ProSiteProfiles 267 301 35 12.2
TIGRFAM 270 303 34 3.0E-8
Gene3D 284 387 104 4.7E-34
Pfam 301 348 48 2.3E-16
ProSiteProfiles 302 336 35 13.263
TIGRFAM 305 338 34 4.7E-10
PANTHER 313 473 161 5.9E-181
ProSiteProfiles 337 371 35 12.485
TIGRFAM 339 373 35 9.3E-7
Pfam 371 420 50 1.4E-19
ProSiteProfiles 372 406 35 13.888
TIGRFAM 374 408 35 9.3E-11
SUPERFAMILY 381 616 236 3.66E-10
Gene3D 388 492 105 4.2E-29
ProSiteProfiles 407 441 35 13.11
TIGRFAM 409 442 34 2.4E-9
PANTHER 431 610 180 5.9E-181
ProSiteProfiles 442 476 35 8.857
Pfam 444 473 30 0.83
Pfam 477 524 48 4.3E-16
ProSiteProfiles 477 511 35 12.825
TIGRFAM 479 513 35 8.2E-9
Gene3D 493 598 106 5.6E-34
ProSiteProfiles 512 546 35 11.948
TIGRFAM 514 548 35 1.9E-7
Pfam 546 595 50 1.2E-15
ProSiteProfiles 547 581 35 11.652
PANTHER 550 746 197 5.9E-181
TIGRFAM 552 583 32 5.7E-6
ProSiteProfiles 582 616 35 11.159
TIGRFAM 584 613 30 1.7E-7
Gene3D 599 694 96 6.9E-25
ProSiteProfiles 617 651 35 13.263
Pfam 617 665 49 1.1E-16
TIGRFAM 619 652 34 3.8E-9
ProSiteProfiles 652 686 35 11.016
TIGRFAM 654 679 26 1.1E-5
ProSiteProfiles 695 729 35 7.443

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0277900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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