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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0283300 |
| Transcript ID | LotjaGi5g1v0283300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like kinase; TAIR: AT1G71830.1 somatic embryogenesis receptor-like kinase 1; Swiss-Prot: sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1; TrEMBL-Plants: tr|I1NH81|I1NH81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0283300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59974830..59979241) extracted from Lotus japonicus Gifu genome v1.2.
CACGTTTTAAGACCAGAAGGAAAAGCCTGAGTATATATATGCCAAAAAAGAGACCGCAATATTCATAATCAGATGGAGAG AAAGTTGTGTTCTTTAGCTTTCATTTGGTGTGTCTTGTTGGTTAATCCACTATGGCTGATTGCTGCTAACAAGGAAGGTT TGTATGGAATAGAATTATTGTCTGTGTAGCTCATTCATTTATGGCTTCAGAAATTGTATTAGTAAATAAAAGGGCACTCT TTGAATTTATTAAGGTTGATATGTAGATAGGATGCTGTAGAACTGGTCAATTGCAATTCAAACTTAGAAATTAATAATTA TTAGTCATATAGGTAGTAACAGAGTCAATCATGGATATTTGCCTACTCCCAATCTACTGGACGTTAAAGAACACACACAT ATTGATAATTCTTCATACATATTTATCTAGTAGAGATAGTTTAACAAAAAAAGATCGATCTTCATGCTGGTGAAACTTCT CTGTTTTTTTTAGTTTTTAATCCTTTTTTTTGTGCCCGATTTGTGTTGTTACAATCAATTTGTTCACATTGGCTAAATAT GAGCAAGGTAAAAACTTTATAAGAAATGCGACTCATGTACGTGACAGGCGTTTAAGGTTTTGGATAAAAATGTGGTATAT AAATCTTTTAGTGGCTTCAGTGTTGACCCATTGGTGCCGGTTCTTCTGCTTTGTGCTCCCACCACAATTCTGGCACAATT TCTACTTGTTTAATTATCTTGCTACTTTTCAACTAGAGATGATAGTTTTTTGTGGAACTTCCAGGACCTGATTATATGTT GTTGTGTTTTAAATAGGTGATGTTTTACATAGGCTGAGGAAAAATTTGAAGGATCCTTACAATGTTCTGCAAAGTTGGGA CCCTAAACTTGCCAATCCATGCACATGGTTTCATGTAACATGCAACGGTGATAATAGTGTCGTAAGAGTGTAAGCTTCTT GTTCCTTCATTCTGTCTAAACTCTAAACTGCTTCTTCTAATGGAGGATGACTTTCTAATGTTGACTTGCGTTTTGTTTTT CCCCTTCGATTGATGTCAGTGATCTAGGAGATGCTGCTTTGTCTGGTCGACTTGTTCCCCAGCTTGGTCAACTCAAGAAT TTGCAGTATTTGTATGTTATGATGATACAATGTTCTTTTCATTTTATCATTATAAACTTCTATGTGCTTGGTTAATAAGT GATAACTTTATAATCTTGATTTGAATATCTTATAACTTCATGTTTTTTTATGTAATAACAGGGAACTTTTCAACAATAGC ATAAGAGGCCCTATTCCAAGTGACCTGGGGAAACTTACTAACCTGGTAAGCTTGGATTTGTACCTAAACCGTTTCTCTGG CCCTATCCCAGATTCATTGGGCAAGTTGTCAAAGTTGCGTTTCCTGTGAGTATGCCATTTTTTTTGTGCTAGATTTCATT ATTCTTCTTCAAGTTACTTCTTTTGACATCAGGGTCGTTGTCGATTTTTTTTTGCGCAGTTTGTGGAACTGTTAAACAGT TTAACAGTTCCACAAACTGCATAGTAAACCGCCACAGATCGCAGGTGTTGCTGGTGTCGTGTACACAAATCATTTTTGTT TCATCATATTTATGTTTGGCAGTTTAAACCATTGGAAAGAAACATGTTATAATGCTGTTCTTGTGGTATGTTTGTCTATA GCCGGCTTAACAACAATAGACTGAGTGGTCATATTCCCATGATTCTGACAAATATTGATACTCTCCAAGTTCTGTAAGTG CTTCTTCATCATCTCAAAATATGCATTTCATTTTCTCTCTTTGATATTTGTATGCTATACTAATAATTTTTCTAATTGGT TCTTCAAATGTAGGGATTTGTCTAATAACCGTCTCTCAGGATTGGTTCCCAATAATGGTTCCTTCGCATTATTCACTCCT ATAAGGTTTCGTATTTGCCTTTTGTGTTATTCTTACATTCATTGGTTTGATTTGTAAAAATTTATGAATGAGCTTTCTTT CTGCTTTCAGTTTTGCAAACAACTTGGATCTGTGTGGACCAGTCACTGGGAACCCTTGCCCAGGCTCTCCCCCATTTTCT CCTCCTCCTCCTCCTCCATGTGTCCCTCCGCCGCCAATTTATGGAGTTTAGTTAAGGGTGTGACTATGATGTTTTAAGCT AGTTCTTCCAGCTCTATGTGAGGCAGTTTCTGTCATTTTACATAGGCATATGCTTGTTTTCCTTTAATTCTGTTGATTGT CTTGTTATTTTTATTGGCCCATTTGGAATAAAGAATCATAAGTCAGTTCTTAAGCCGTTAACGTGAAGGACGTTGCTCTG GTTGGTACTCTTTTGTAATTGAAGGATTTAGAACCCTTCAGTTTATTATTTATAATATAAATGAAAAAATTGTAATTTAA AAAAATTTATTATAGAAGAAAACATGAAAAACCAAGGAAAACACACACTTAGAAACTGGATTTGGTTTAGTGTTTGTGTG ATTTCACATCTTCTCTTTTTTGATTGGATATATGGCTAATTCTTCATATCTAGGAGATGGTGGGATGACTACAGTTCAAT TGAATAGTCTTTCTCAGTGTCATGATTCTTTTAATCCAGACCAATTTGTTTAAATTGGTTCTTCATCTATCTGTCAAGAT TCAAAAACTTATAGATAGATAGAGTAATTGCCAAAAAGTGGCAATTTATCAGCAGTTCCACTGATTCACACATTATGCCT CACTCTAATCATGTCAGTTGTGAGGAAAACAGGGAAATGAAATTAAGAACAAACTGCCACTAGAGAAACAAATAACCAGT TAATTCTATAAACAATATTTCATGAGAGCCATATTCCTTAGTGCACCTTATTGTTCAATATTCCACTTCCACATGCTTAG TGGAACTATAATTTTTACCAATCAAACTCTGTCTCCTCAATCCTATAAGTCATATATAGTGTCTCTCTGGAACCTGAAAT TTCCAAGACAAGCCAATGGAAAACCTACCCCAATTGATTTACAGAAACCCTGTTAGAAGAACCTCTAGGCGGTCTACAAT GTATCTTGGTGTGAGAAAAAGGCTATGGTGAAGCAGTTGGCTAGGTACATTTGACACTGCAGAAGAAGCTGCTATAGCTT ATGAAATTGCTAGGACTAATTTTCATTACCCTTTTGTATCTCTTCACCACCTCCTCTGCCATTGCCTCCTCCACCGCCAC AACCGATCCAGAATTCGATGCAAGTGTGCAAATTCTTCCTGAGATCAATGCTGCGTATGATGGTGATGATGAATCTCTAG ACTTATTGCTTCCATCTTGCAAAGTTTCTCCAATTCTGATAACTTTCTTTTTAGTGTTTTCGTTCCCTTGAGACATAAAT TAGTTGCTCATTATCAAATAGTTGTATCAATAATTCTTTAGCTTGTCCTGTTTCTTTTGTTCTGCATTAATTAATTGTTG GCTTAATTGCACTTTTGGTCCCCTATGTTTCACCTATGTGCAATTTTCATCCCCTTTGTTCTAATTGCGCGATTTTAGTC CATTTTAGATCACTTTGTGCCAATTTGGTCCATCCGTCAGAACTAACGTCCAAGGTGGCCAGCGTGTCTTTCATTTATGA CGTGGCCCTTTTCAGTGGGCCCACTTTGGCTGATGTAATACTATAACAAAACAAAATAAATACTGGGTCATGTGAATCTC CTTCTTCCCCAAATCTTTTACGCAAGGTTCCCCAATTCTTGACCTAGGTTTGTGTTTCTCTCATTCTTCCCCAAATCTTC CATACTTTTCCCAATTTTTTGACTCAGAAGAACTCCGGCTGCCATGAATCGTGGAGAGCACCAGGCTGCGCCTTCGTCTG CGAGCACGATGAGCGATTCCTCTGTGCGAAGAAGACTAGTTTGTGACTGTGGGGTTGTATCTCCATTGAAGACGTCATGG ACCAAAGAAAACCCAGGGCGGCGGTTTTATGGGTGTGGGTTATATCAGGTAAGAAGCACTTAATTTTTCCATTGTTTTTT CTGAATTTGATGCCTAAACTCAAGTAATTTCATTTTGTCAGGGAAGGAAAAGGAGGTGTGGGTTTTTTCAATGGCATGAT CAGGAATTTAATCCACGTGAGAAGAAGGTGATTGCTTGGTTACTTACTGTGGTTGAAGGCATGAAGAAGAAGGAGAAATT TTTAGTTCGTTGTCTAGTAATTTGTTGTGTAGTTATGTTGGCTTTGGTCATTGTAATTGGTTACTTATTGCTGTGCAAGT GAGATATTTATCTGAGATGTTTAGGAAGGCTTAATGATGCTTAGTGTCGAGCTTTCTTGGGTAGATTATGTAGAAGGGAG TAGGGTAGTTAGGGAGTTGGAGTATTTTGTATGCAGAAATGGGATGGACTGGAATTGGTGTATGTAACCCAATATTTTGT AATGGAAATGGC
CDS sequence (LotjaGi5g1v0283300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGAAAGTTGTGTTCTTTAGCTTTCATTTGGTGTGTCTTGTTGGTTAATCCACTATGGCTGATTGCTGCTAACAA GGAAGGTGATGTTTTACATAGGCTGAGGAAAAATTTGAAGGATCCTTACAATGTTCTGCAAAGTTGGGACCCTAAACTTG CCAATCCATGCACATGGTTTCATGTAACATGCAACGGTGATAATAGTGTCGTAAGAGTTGATCTAGGAGATGCTGCTTTG TCTGGTCGACTTGTTCCCCAGCTTGGTCAACTCAAGAATTTGCAGTATTTGGAACTTTTCAACAATAGCATAAGAGGCCC TATTCCAAGTGACCTGGGGAAACTTACTAACCTGGTAAGCTTGGATTTGTACCTAAACCGTTTCTCTGGCCCTATCCCAG ATTCATTGGGCAAGTTGTCAAAGTTGCGTTTCCTCCGGCTTAACAACAATAGACTGAGTGGTCATATTCCCATGATTCTG ACAAATATTGATACTCTCCAAGTTCTGGATTTGTCTAATAACCGTCTCTCAGGATTGGTTCCCAATAATGGTTCCTTCGC ATTATTCACTCCTATAAGTTTTGCAAACAACTTGGATCTGTGTGGACCAGTCACTGGGAACCCTTGCCCAGGCTCTCCCC CATTTTCTCCTCCTCCTCCTCCTCCATGTGTCCCTCCGCCGCCAATTTATGGAGTTTAG
Protein sequence (LotjaGi5g1v0283300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERKLCSLAFIWCVLLVNPLWLIAANKEGDVLHRLRKNLKDPYNVLQSWDPKLANPCTWFHVTCNGDNSVVRVDLGDAAL SGRLVPQLGQLKNLQYLELFNNSIRGPIPSDLGKLTNLVSLDLYLNRFSGPIPDSLGKLSKLRFLRLNNNRLSGHIPMIL TNIDTLQVLDLSNNRLSGLVPNNGSFALFTPISFANNLDLCGPVTGNPCPGSPPFSPPPPPPCVPPPPIYGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 16 | 213 | 198 | 4.6E-60 | – | |
| PANTHER | 16 | 213 | 198 | 4.6E-60 | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Gene3D | 22 | 211 | 190 | 3.6E-61 | ||
| Pfam | 25 | 65 | 41 | 6.6E-10 | ||
| Phobius | 25 | 232 | 208 | - | – | |
| SUPERFAMILY | 27 | 189 | 163 | 2.18E-36 | – | |
| Pfam | 166 | 182 | 17 | 0.087 | ||
| MobiDBLite | 212 | 232 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0283300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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