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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0288800 |
Transcript ID | LotjaGi5g1v0288800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Receptor-like kinase; TAIR: AT5G42440.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2; TrEMBL-Plants: tr|G7IBW3|G7IBW3_MEDTR Receptor-like kinase; Found in the gene: LotjaGi5g1v0288800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60544337..60546106) extracted from Lotus japonicus Gifu genome v1.2.
ATTTACTTTCCTAGATTACCCTTATTTACTTTTCTATGATTTTCTCTCTCCAAGTTAATACTTTTTTTTCAAAAAATGTG ACTTATAATGGGGAACGGAGGGAGTAACTTTTAAGTCAATAAATTAAAGGTCTCACCACTATAGTCATGTCAATCATGTC ATTGGCACCACCCCACTAAAATACACTATTCAATCTTCATTCCCAACATTACAAATGATGAACAAGTCAACAAACAAACT CGTTGACTAGTCTAGTCTTCTTAGTTCTTACCCACACCCACCCACCTTCCCCCTTCATTTCTCTCTCATTCTCTAAAACC TTCTTTCTCTCTCTTCCCACCATGGACCACGGCGTCCAAGCCATCTTCGCCGCCATCGGCAGCTTCATCGTCGTCACGCT CCTCCTCGCCGCCGCCATCCTCTTCTGCCAGCACCGCAAATCCACCAAATCCCGAACCCGCCGCAACAACCAGATCCGAG CCCGCCCTCTCCGAAACCCCAACCCCAGCTCCTCCCTCTCCATCGTCGACGCCAGCTGGTCCTGGGATCCCAAACTCAAG ATCTCCATGGAAGAACTCTCCCGCGCCACAGAAAACTTCTCCCCGCGCCTAATCGTCGGCGACGGCAGCTTCGGCCTAGT CTACAAGGCTCGCCTCTCCACCGGCGCCGTCGTCGCCGTCAAGAAGCTCTCCCCCGACGCCTTCCAAGGCTTCCGTGAGT TCGCGGCGGAGATGGAAACTCTCAGCAAGCTCGGCCACCGCAACATCGTGAAGATCCTCGGGTACTGGGCCTCCGGCCCG GAACGGTTACTCGTCTACGAGTTCATCGAGAAAGGGAACCTTGACCAGTGGCTTCACGGGCACTCATCAAACGACGACGT TTTCCGCTGCTTCCCGTTGACGTGGGTTCACCGGGTCAACATCATGCGCGGTGTGGCCCATGGGCTTTGCTATCTTCACG GGCTTGACAAGCCCATCATCCATCGAGACATCAAGGCTAGCAATGTGTTATTGGACTCTGAATTTCAGGCCCATATAGCT GATTTTGGGCTGGCCCGGAGAATAGATACCTCGCATTCGCACGTGTCAACGCAGTTCGCGGGAACTATAGGGTACATGCC CCCGGAGTATAGGGATGGTGTCCTTGTGGCGAATAAGAAGGTGGATGTGTATAGTTTTGGGGTGTTGATGATGGAAACCG CGTCGGGGCACCGGCCCAATTTGGCGGTGAGGTTCGACGGGGTGGACATTGGGCTGGTCCAGTGGGCTAGGAAGATGAAG GAGCAGGGGGCTGAGATGAAAATGGTGGATGAGAAGATTTCAAGAGATGAAGAAGGGTTGAGGGAAGAAAGTGTTAAGGA GTATATACGCATTGCTTGTATGTGTGCTGGTGAGTTGCAAAAGGAAAGGCCTCAAATGGTTGAGGTTGTTAAATTGTTGG AATCAATGCCCCACTTTGATTATCAAAACGATGTAAATAAAATAGCTACATAGGAAGAGCAAAAATATTGCAATAAGTAA GATTGTTTTAATGTAATTCTATTATAATAGCATTGTTATATAATATTGTTTCACGTGCGTGTTTGTGGCGATGGTAAACG TCTACTATCACATTTTTGTTGTTTTTTTGGTTGAGACATTTTTGTTCATCTTGGGCCTGACCTTTAATGAATGGCACATT ATCTCTTTGACCAAAAACAAAATTAGTAAAGTGTAACATTTTTAATTTAGCGATTAAGTGTTTCAAAAAAAAATTAGTGA TTAAGTATGG
CDS sequence (LotjaGi5g1v0288800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCACGGCGTCCAAGCCATCTTCGCCGCCATCGGCAGCTTCATCGTCGTCACGCTCCTCCTCGCCGCCGCCATCCT CTTCTGCCAGCACCGCAAATCCACCAAATCCCGAACCCGCCGCAACAACCAGATCCGAGCCCGCCCTCTCCGAAACCCCA ACCCCAGCTCCTCCCTCTCCATCGTCGACGCCAGCTGGTCCTGGGATCCCAAACTCAAGATCTCCATGGAAGAACTCTCC CGCGCCACAGAAAACTTCTCCCCGCGCCTAATCGTCGGCGACGGCAGCTTCGGCCTAGTCTACAAGGCTCGCCTCTCCAC CGGCGCCGTCGTCGCCGTCAAGAAGCTCTCCCCCGACGCCTTCCAAGGCTTCCGTGAGTTCGCGGCGGAGATGGAAACTC TCAGCAAGCTCGGCCACCGCAACATCGTGAAGATCCTCGGGTACTGGGCCTCCGGCCCGGAACGGTTACTCGTCTACGAG TTCATCGAGAAAGGGAACCTTGACCAGTGGCTTCACGGGCACTCATCAAACGACGACGTTTTCCGCTGCTTCCCGTTGAC GTGGGTTCACCGGGTCAACATCATGCGCGGTGTGGCCCATGGGCTTTGCTATCTTCACGGGCTTGACAAGCCCATCATCC ATCGAGACATCAAGGCTAGCAATGTGTTATTGGACTCTGAATTTCAGGCCCATATAGCTGATTTTGGGCTGGCCCGGAGA ATAGATACCTCGCATTCGCACGTGTCAACGCAGTTCGCGGGAACTATAGGGTACATGCCCCCGGAGTATAGGGATGGTGT CCTTGTGGCGAATAAGAAGGTGGATGTGTATAGTTTTGGGGTGTTGATGATGGAAACCGCGTCGGGGCACCGGCCCAATT TGGCGGTGAGGTTCGACGGGGTGGACATTGGGCTGGTCCAGTGGGCTAGGAAGATGAAGGAGCAGGGGGCTGAGATGAAA ATGGTGGATGAGAAGATTTCAAGAGATGAAGAAGGGTTGAGGGAAGAAAGTGTTAAGGAGTATATACGCATTGCTTGTAT GTGTGCTGGTGAGTTGCAAAAGGAAAGGCCTCAAATGGTTGAGGTTGTTAAATTGTTGGAATCAATGCCCCACTTTGATT ATCAAAACGATGTAAATAAAATAGCTACATAG
Protein sequence (LotjaGi5g1v0288800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHGVQAIFAAIGSFIVVTLLLAAAILFCQHRKSTKSRTRRNNQIRARPLRNPNPSSSLSIVDASWSWDPKLKISMEELS RATENFSPRLIVGDGSFGLVYKARLSTGAVVAVKKLSPDAFQGFREFAAEMETLSKLGHRNIVKILGYWASGPERLLVYE FIEKGNLDQWLHGHSSNDDVFRCFPLTWVHRVNIMRGVAHGLCYLHGLDKPIIHRDIKASNVLLDSEFQAHIADFGLARR IDTSHSHVSTQFAGTIGYMPPEYRDGVLVANKKVDVYSFGVLMMETASGHRPNLAVRFDGVDIGLVQWARKMKEQGAEMK MVDEKISRDEEGLREESVKEYIRIACMCAGELQKERPQMVEVVKLLESMPHFDYQNDVNKIAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 5 | 5 | - | – | |
Phobius | 6 | 29 | 24 | - | – | |
TMHMM | 7 | 29 | 23 | - | – | |
PANTHER | 8 | 371 | 364 | 6.5E-104 | – | |
PANTHER | 8 | 371 | 364 | 6.5E-104 | – | |
Phobius | 30 | 383 | 354 | - | – | |
MobiDBLite | 38 | 57 | 20 | - | – | |
Gene3D | 52 | 161 | 110 | 9.8E-31 | – | |
SUPERFAMILY | 60 | 367 | 308 | 6.47E-73 | ||
ProSiteProfiles | 86 | 372 | 287 | 36.513 | ||
SMART | 86 | 372 | 287 | 4.8E-31 | ||
Pfam | 92 | 366 | 275 | 4.5E-42 | ||
CDD | 92 | 369 | 278 | 6.75796E-92 | – | |
ProSitePatterns | 92 | 115 | 24 | - | ||
Gene3D | 162 | 381 | 220 | 8.4E-55 | – | |
ProSitePatterns | 212 | 224 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi5g1v0288800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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