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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0298800 |
| Transcript ID | LotjaGi5g1v0298800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A072TIZ9|A0A072TIZ9_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi5g1v0298800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61553408..61557248) extracted from Lotus japonicus Gifu genome v1.2.
CCTGAGTCTTGACAGCTTCGGTTTCTCTCTCCTGAGTCGATCCATTCGCACAGAACAGAAGTGTATCCCTGTCTCCATTC CTAGGCTACAATGTTGTCGTTGATGTTCAGGTTCAGAATCTCTCCGGTTCTTTCTTTACCATCACTCTCAAGAACCCTTC ACTGTCACTCTCAAAATGCTCCTTCCAATTTCAATGTTGATGATGCCGTCGTTTTGTTCAACCGCATGCTCCAAATGCGT CCTTCTCCACCCATTATCGAGTTTAACAAGATTTTAACTTCCCTCGTCAAGACAAAGCATTACTCCACTGCCATTTCCTT TTCTCAACAAATGGAATTCAGCAGAGTTATGCCTGACTTAATCACTTTCAACGTCTTCATCAATTGTTACTGCCATCTAC TTCAGCTCACTTCTGCTTTTTCTGTACTCTGCAAGATTTTCAAGATGGGTTATCAGCCTGATACCATCACCTTCACTACA CTTATCATAGGTCTCTGTCTTCAAGGTGAGGTTCAGAGAGCACTGTGCTTTCATGATGAGGTTGTTGCACAAGGATTTTC GTTGAATCAAGTTAGTTACGGGACCTTGATCAAAGGGTTATGTAAAATGGGACATACAGGACCTGCACTGCAATTGCTGA GACAGATCCAAGGGAAGTTGGCTCAACCTAATGTGGTAATGTTCAACACAATCATTGATAGCTTGTGTAAAGATAAACTT GTAAGTGATGCCTATGATTTATACTCTGAAATGTTTGCCAAGAGAATTGCACCTACTGTTGTCACTTACACTACTCTAAT ATCTGGCTTTTGCATTGTGGGTCAAATGGAAGCAGCAATTGGTTTGTTAAATGAAATGGCATTGAAAAACATCAATCCAG ATGTTATTACCTTTAATATATTAGTTGATGCTTTATGCAAGGAAGGAAAGGTGAAAGAAGCCAAAAATGTGTTAGCTGTG ATGATCAAAAAAGGGGAAAAACCTGATGTTGTTACTTATAGTTCTTTGATGGATGGGTATTGCTTAGTTAATGAAGTAAA CAAGGCCAAAGATATATTCAATGAGATGACCCGAAGGGAAGTGACCCCTAATGTTCAGAGCTACAATATTATGATTAATG GATTATGTAAGATTAAAAGGGTTGATGATGCCTTGTATCTCTTTAAACAAATGCATCCCGAAAAGATAATTCCTAATGTT GTAACTTATAGTTCTCTTATAGATGGTTTGTGCAAATCAGGGAGAATATCTGATGCTTGGGATCTTGTTGATGAGATGCA TTGTAGAGGTCAACCACCTGATGTAATCACATACAATTCTTTATTGGATGCTTTATGCAAAAGCCATCATGTTGACAGGG CAATTTCTTTGATCAAGAAAATGAAAGACCAGGGTCTTCAACCTTCGATGCACACATACAATATACTTATGGATGGACTA TGCAAAGCAGGCAGAGTTGAGAATGCACAAGAGGTTTTTCAGGATCTTTTAATTAAAGGCTACAATTTAGATGTACGGTC GTATACAATTATGATTAATGGGCTTTGTAAAGAGGGCTTGTTTGATGAAGCATTGACACTGATGTCAAAAATGGAAAACA ACGGTTGCATCCCTAACGCTGTAACTTATGAAATAATAATTCGTGCTCTCTTTCAAAAAGGTGACAATGTTAAGGCAGAG AAGCTTCTCCGTGAAATGGCTGCTAGAGGTCTATTGTAAGAGTAAAACTAGGTAAGGTGCTTTTGAGCCTGACGTAAATT TTCTCACCAATGTATTGTCTCTACATAATCTACTTTATTTATTTATTTTCCTATCAGTGATCATTGCTAGTGTTTCAGAT AACAAACCTGTCAAACCAAGCTGAAACTTAAATGATTGATTATTGGGAATGATTAATCTCTTATAACAGTTGACTCTATT TACTCCAAACTATTAATAGGTGAACTTGAAATTTCTTCATTTTTAATTTATTATGGGTTTGTGTTGTTTTCATTTGTTAT CTTAGTTTGCGAGCTGTTTTTGGCTTCAGGGTCTTAGTGTTTTTAGCATTTTCAAATTTATTAATAATCATTGTTGTCTG GTGTAGTTCAGATTGGAGTCAGTAGCATTAAAATCTAGTAAACTACTTTTGTTTTCCTTTCCGTCTAAGTTTCTAGTACA AACATACGAGCAGAAGCAAGCTTCACATATTTTATTTACAACCAGATTCTACCCTTTGCATTATACATGATATTAAAGTA ATGGAGAGACTAAGGGCAGGTGGAAAGTGTACATAGGGTATTGAGTTCACAAAAGGAGGAACAAAACAATTGGACTGGGT CTGGATGTGCAACTTGATCGACCTTCTGGTGACCGAATCTGTCATTTATTTGTCATTGTGCCTTCATCTCCCATACATCT TTGAGATAATCTCATCTTATATAAATGAGTAGATTTCGTCACGCATTAATCAGCCAGCTTCATGCTATGCCTTAAGTCAG GTATCTGTGCAAATTTCATGTTTTCTTATTTGCGTTGTTGTCTGTCTGTCTTTTGGTTTGCCTGGTCTACTTTACTAGAT TTGATGAAAGTTTAATGATGTGCCCGATGGAGAAGTGGTAGTCTGCTTATTGCTTACTGTCAAGTGTCAATGTCATGTTT TCCCTCCTTTTTACTGCCCCTTCTCATGTTCTGTATCTTGATTATTGTGTGAGAACACACACACACATAAATGCAAAATG CTGAATGGCACAAATGACAAATCTAATATGGCATGAAATACAGGAATCTCTGCCTTCTCAGTTCTCATGACACACTTTCT GTGAATATCTCTATATCTTTGCTGTTTTGTTTTTCCTCCTCTAGTTACTCTCTCCTTTTTCCTCCCTTTCTCTTTTGTCC AGATTTTGTTTTCCACTTCAGGTCACCATCCTCTCTTTGTTTTTCACAGTTTCTGCTCTCCCTTTCAAATCCAGACCTGT TGCAAACTTGCTATTAACCTTTGTTTTCTTCCTCTTAATCGTAATGGGCTTAATGCTGTAGAAGGGCTTGGCAGAACAGA GATTGTGTTTGTCTTAGGTATTAACCTAAGCTTTATAGAACTGGTTTATTCTATGCTACTCAATTTGAGGTTGTGGAAGA GCTTTCCGCGCCTGGCTTGAGGAGCCCTGTGAGGGTTGAAGATTGAGTGGAAATATAAACAGCAAATGATCTTGCAGCAT CAACACAACTAGAAACTTCAAAGATGCCTTGAGGTCTTCACATTGAACTTTGAAGTACAACTCATTAGATTGGATGTACT TTCCCATCAAAACATTTTACTCTTTCATGTTATTATGTTGAATCAATTTAATAATTTTATGTAATTTAGCTCTGAATCTC TGGCTGGTATTCTTACTAGAATGTATATATGATGTTTCACGCATTGCTAATGGAGGCATAAAATGTTTCTTGTATTGCTT ATAGATGCATGTGGAAATGGAGTTTTCTAAGCAGTGTTTGGTTAACTTCCTAAACTGGATGTTGTCTGTTGGAACTCAAT GATAACAGGGTTCTCAATCAATTCTCTAGAACAAAATTCTTTGTCTTTCTTTACATAGATGCGGCACTTAGGGCTTCTTT CCTTCCAAGTTTTCTTCTGCTTCCATAATTAGTTCTTGTGCAAAACTGTCTTCTTTATGTAAAGAACAAGAGATTCATGC TCAGATCATAAAATTTGTTATGTACATGACCAATTTTATTGTAAATGTACCTGGAGCCAGATGCTTTTTCTGAAATTTTA TTAGAAGTGAGTTCATGAATGATGTCCAAGTCACTTTGTCACACAAACAATAATCTTTTATTGGTTGGATATAAAGTCAA G
CDS sequence (LotjaGi5g1v0298800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCGTTGATGTTCAGGTTCAGAATCTCTCCGGTTCTTTCTTTACCATCACTCTCAAGAACCCTTCACTGTCACTC TCAAAATGCTCCTTCCAATTTCAATGTTGATGATGCCGTCGTTTTGTTCAACCGCATGCTCCAAATGCGTCCTTCTCCAC CCATTATCGAGTTTAACAAGATTTTAACTTCCCTCGTCAAGACAAAGCATTACTCCACTGCCATTTCCTTTTCTCAACAA ATGGAATTCAGCAGAGTTATGCCTGACTTAATCACTTTCAACGTCTTCATCAATTGTTACTGCCATCTACTTCAGCTCAC TTCTGCTTTTTCTGTACTCTGCAAGATTTTCAAGATGGGTTATCAGCCTGATACCATCACCTTCACTACACTTATCATAG GTCTCTGTCTTCAAGGTGAGGTTCAGAGAGCACTGTGCTTTCATGATGAGGTTGTTGCACAAGGATTTTCGTTGAATCAA GTTAGTTACGGGACCTTGATCAAAGGGTTATGTAAAATGGGACATACAGGACCTGCACTGCAATTGCTGAGACAGATCCA AGGGAAGTTGGCTCAACCTAATGTGGTAATGTTCAACACAATCATTGATAGCTTGTGTAAAGATAAACTTGTAAGTGATG CCTATGATTTATACTCTGAAATGTTTGCCAAGAGAATTGCACCTACTGTTGTCACTTACACTACTCTAATATCTGGCTTT TGCATTGTGGGTCAAATGGAAGCAGCAATTGGTTTGTTAAATGAAATGGCATTGAAAAACATCAATCCAGATGTTATTAC CTTTAATATATTAGTTGATGCTTTATGCAAGGAAGGAAAGGTGAAAGAAGCCAAAAATGTGTTAGCTGTGATGATCAAAA AAGGGGAAAAACCTGATGTTGTTACTTATAGTTCTTTGATGGATGGGTATTGCTTAGTTAATGAAGTAAACAAGGCCAAA GATATATTCAATGAGATGACCCGAAGGGAAGTGACCCCTAATGTTCAGAGCTACAATATTATGATTAATGGATTATGTAA GATTAAAAGGGTTGATGATGCCTTGTATCTCTTTAAACAAATGCATCCCGAAAAGATAATTCCTAATGTTGTAACTTATA GTTCTCTTATAGATGGTTTGTGCAAATCAGGGAGAATATCTGATGCTTGGGATCTTGTTGATGAGATGCATTGTAGAGGT CAACCACCTGATGTAATCACATACAATTCTTTATTGGATGCTTTATGCAAAAGCCATCATGTTGACAGGGCAATTTCTTT GATCAAGAAAATGAAAGACCAGGGTCTTCAACCTTCGATGCACACATACAATATACTTATGGATGGACTATGCAAAGCAG GCAGAGTTGAGAATGCACAAGAGGTTTTTCAGGATCTTTTAATTAAAGGCTACAATTTAGATGTACGGTCGTATACAATT ATGATTAATGGGCTTTGTAAAGAGGGCTTGTTTGATGAAGCATTGACACTGATGTCAAAAATGGAAAACAACGGTTGCAT CCCTAACGCTGTAACTTATGAAATAATAATTCGTGCTCTCTTTCAAAAAGGTGACAATGTTAAGGCAGAGAAGCTTCTCC GTGAAATGGCTGCTAGAGGTCTATTGTAA
Protein sequence (LotjaGi5g1v0298800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSLMFRFRISPVLSLPSLSRTLHCHSQNAPSNFNVDDAVVLFNRMLQMRPSPPIIEFNKILTSLVKTKHYSTAISFSQQ MEFSRVMPDLITFNVFINCYCHLLQLTSAFSVLCKIFKMGYQPDTITFTTLIIGLCLQGEVQRALCFHDEVVAQGFSLNQ VSYGTLIKGLCKMGHTGPALQLLRQIQGKLAQPNVVMFNTIIDSLCKDKLVSDAYDLYSEMFAKRIAPTVVTYTTLISGF CIVGQMEAAIGLLNEMALKNINPDVITFNILVDALCKEGKVKEAKNVLAVMIKKGEKPDVVTYSSLMDGYCLVNEVNKAK DIFNEMTRREVTPNVQSYNIMINGLCKIKRVDDALYLFKQMHPEKIIPNVVTYSSLIDGLCKSGRISDAWDLVDEMHCRG QPPDVITYNSLLDALCKSHHVDRAISLIKKMKDQGLQPSMHTYNILMDGLCKAGRVENAQEVFQDLLIKGYNLDVRSYTI MINGLCKEGLFDEALTLMSKMENNGCIPNAVTYEIIIRALFQKGDNVKAEKLLREMAARGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 542 | 517 | - | – | |
| Gene3D | 28 | 186 | 159 | 2.2E-31 | ||
| SUPERFAMILY | 36 | 361 | 326 | 7.59E-6 | ||
| PANTHER | 36 | 187 | 152 | 3.9E-147 | – | |
| ProSiteProfiles | 54 | 88 | 35 | 6.708 | ||
| Pfam | 88 | 136 | 49 | 4.6E-10 | ||
| ProSiteProfiles | 89 | 123 | 35 | 9.569 | ||
| TIGRFAM | 91 | 125 | 35 | 6.2E-4 | ||
| ProSiteProfiles | 124 | 158 | 35 | 9.471 | ||
| TIGRFAM | 126 | 159 | 34 | 1.7E-4 | ||
| Pfam | 155 | 185 | 31 | 5.3E-7 | ||
| ProSiteProfiles | 159 | 193 | 35 | 9.558 | ||
| PANTHER | 181 | 396 | 216 | 3.9E-147 | – | |
| Gene3D | 187 | 258 | 72 | 2.7E-20 | ||
| Pfam | 192 | 221 | 30 | 2.6E-9 | ||
| ProSiteProfiles | 194 | 228 | 35 | 11.148 | ||
| TIGRFAM | 196 | 229 | 34 | 5.4E-7 | ||
| Pfam | 228 | 277 | 50 | 2.7E-17 | ||
| ProSiteProfiles | 229 | 263 | 35 | 11.17 | ||
| TIGRFAM | 231 | 265 | 35 | 1.9E-7 | ||
| Gene3D | 259 | 328 | 70 | 1.8E-22 | ||
| ProSiteProfiles | 264 | 298 | 35 | 12.759 | ||
| TIGRFAM | 266 | 300 | 35 | 2.7E-8 | ||
| Pfam | 298 | 347 | 50 | 1.1E-18 | ||
| ProSiteProfiles | 299 | 333 | 35 | 12.31 | ||
| TIGRFAM | 301 | 335 | 35 | 8.2E-9 | ||
| Gene3D | 329 | 398 | 70 | 1.4E-23 | ||
| PANTHER | 330 | 537 | 208 | 3.9E-147 | – | |
| ProSiteProfiles | 334 | 368 | 35 | 12.255 | ||
| TIGRFAM | 337 | 370 | 34 | 7.9E-10 | ||
| Pfam | 368 | 417 | 50 | 1.8E-19 | ||
| ProSiteProfiles | 369 | 403 | 35 | 13.537 | ||
| TIGRFAM | 371 | 405 | 35 | 1.1E-10 | ||
| Gene3D | 399 | 467 | 69 | 1.5E-24 | ||
| ProSiteProfiles | 404 | 438 | 35 | 13.526 | ||
| TIGRFAM | 406 | 439 | 34 | 1.3E-8 | ||
| Pfam | 435 | 464 | 30 | 7.4E-11 | ||
| ProSiteProfiles | 439 | 473 | 35 | 11.762 | ||
| TIGRFAM | 441 | 474 | 34 | 9.3E-7 | ||
| Gene3D | 468 | 539 | 72 | 2.4E-20 | ||
| Pfam | 474 | 520 | 47 | 6.4E-15 | ||
| ProSiteProfiles | 474 | 508 | 35 | 13.548 | ||
| TIGRFAM | 477 | 510 | 34 | 4.7E-11 | ||
| ProSiteProfiles | 509 | 542 | 34 | 10.139 | ||
| TIGRFAM | 511 | 541 | 31 | 0.0016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0298800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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