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LotjaGi5g1v0301800.1

Overview

Field Value
Gene ID LotjaGi5g1v0301800
Transcript ID LotjaGi5g1v0301800.1
Lotus japonicus genome version Gifu v1.2
Description Cleavage and polyadenylation specificity factor subunit 5; TAIR: AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit; Swiss-Prot: sp|Q8GXS3|CFIS2_ARATH Pre-mRNA cleavage factor Im 25 kDa subunit 2; TrEMBL-Plants: tr|A0A0L9VEN5|A0A0L9VEN5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0301800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:61876667..61881246) extracted from Lotus japonicus Gifu genome v1.2.

GATTTTAAATTTTTTGTCATGATTAATTGACAAAACGATGCGAGCCCGCTGGAACTTGGAAACTTGAAACTTCGATTCAG CGAGCGAGCGCAACCTCTCTGATCTCTCTCTTCTTCCATTCTTCGTTCAATTCTCAGCACAACAGAAGAAGAAGAAGAAG AAGAAGAAGAAGCTCGAGAAGAAGAAGAAAATGGTGTCATCTCAGGTGGTAAACACATACCCTCTTTCCAGCTACACCTT CGGTACCAAGGAGCCCAAGATGGAGAAAGACACCTCCGTCGCCGATCGTCTCGCTCGCATGAAAGTCAAGTTCGTATCTC TCTTCCTTCCCTCTTCTTTCTCCTCTTCCGAAACCCTAATCCCCAAATCCCCTTTTTTCTTACTAGTTAGGTCACTGTAC AACAAACCCTAGACCGAACACCCCACCACCCCAAATCCCCTTTTTTTTCACTCTACTCTTTCAAGCTAGACTCTTTTCAT TACTGTTTTTCAATACAGATTATTGGGTATCGCTGATTTTTTATTTTTTAAAAAATTATTTGTATTTTTTTGTCACATAG GCAAGGTTTTTGAAATTTGGAGTTGTATTCTGATTGAACCTAGAAGCAAAATGAAGTAGATAAATAGTGAAGGGGAAAGG AAACTGGAAGCTTTGTAGTAGAACTGAGCTTCCAAATGTGCAATCACTTTACTTGTTTTGTTCATTTGTCCTGTGTGCTG CTCAAATTCATTATATACTCAAATGGTTCTGAAACATGATTAATTCATTTGTTTTTCTAAACTTCAGCTATATGAAGGAA GGAATGAGGACCAGCGTTGAAGGAATTTTACTGGTATGTTCAGCTATTGTTCTCTCTCAATAAATTTTTTGGTACATACA TGTGACACTCATTTTTTATTTGGCTTCTTATGAAAAAAATGTAAACTTCAATTTGGTCTCTATATGTACAATCGTTTTCT ACTCTGTCCTTGTTATCTGTTGCCTTATAACTCTACACTGAGATAGATTCTCACCCTTAAGCATAGAGATCCAATCGAAA AATGACTCTCATGTATCTTAAAACATATAGTATTTATGGTCCATGAATATGGCACTCATTATTCAATTTGATCCGTACCA GCATAATGTTTTAGTTGTATCTTAGAAAAATTTAGAATATCTTAGATTCTCTATGCAGATTGGTTTCCACATTTCTTGAT TTATTTCCTTGTTTAATTAGGATTAGGAGGCCAGTAATTATGCTCATTAGTTTACTTGTTTGATTAGGACAAGAGTCTAG TATTGGTACAAATAAGGGCAAGTGCTTAGTTTTTGTATAAAAAGTCATAACCACAGTTCAAAGTCTTTCTTTTTCCTCTT CTCACTCTCATTATCTAAAGTCCTATATCTTCAGCTTGGTAGGGTGATATCATCCTCTGTGACATATTCTTTTATAATTA TTTTACTGATGAATTCCCTAAAGTCTGGGACTCTAGTATAATAGTGTCATTATCTCCATGATTCTTTTCTTCTGCCGGTT GTACACAGATTTCAGCCATCCCTTTTTGCCTAAATCCTCTCTTTGTTAGTATTGTTCTTTTTCATTTGCTACTTCCACAA CTTCTCTGAGCAGCCTTAGATTTGCGTGTCACTTTTGTGTCCTTTCAGGCTTTCAGCAGCCTTTCACTATCTCAGATGAA ATTTGACCTTGGTGATCACGGATGCAGTCTGGCCCTACCCACCCGATGCAAACCATTCCATATCAGTGCTGAATTTGTTA TCATATGCAATGGTCTCCCATTGTGAATCATATCAATGGCATCCTTAACTTTCTTGTGGTTAAGGTGGAAATGTTCTTCT TGGTGGGTTTGGGAACTTTTAGTTTTTGCTGTGTATAAATTTCTCGCTGCGAAATTTCAGCTGATTATCATTCCATCAAG CCTCTTCTTCATTGGTTGTGCAACCTTGAGACTTGCTCCTTAGTTTGATGGTATTCCAGCCATCTTGCTCTGTTATCTTT CCAGCAATACTTATCTCTTCAAAATCTCTAGCATCCTTGAGTTGCTTTTCCTGCCATATTTTGTGGAGCCCATATTTGTT TTTTTAAGGATTTATTCGTAACAAGCTCAAGACTTAGCAACTATGTTTTACTCAGACTATGACGATACTTCTTCACTTTT TGCTATCTGGCTTAGTTCGTGTTTTTCTGTCCACGGAAGCCCTAATTCAGTGGCCTTTTGCAGCAAATGGACTTAGAAAA TGCTTCCTTGCAGCGGGGACGGGACTTGGCTGAGGAAATCTATATGGAACAACCTCATCAAGTCTGGTCTGTAAACTTAA AAATCACTATATGACCTGAAACAATCTCCTCGATGTTGGTTTGGACGATTCAGCTGCCCATTTGAGAGTGTCGGTCTTGG TGCACATGCAACAATACGATTTTTAACTTTTGACCTGGTAGTTACAATGTCTAATTATGGAATAATTCTCTCTGCTCACG GCAGCATAAGTTTTACCTTTCCTGCAATGATGGGAGCCTCACTTAAGAATTTTGCTGTAGAGCTTGGATGTAGTCATGAG ACCAGAAGAGTCCTTTACATAAATTACTTGTTCTTGTAATGTGGTTTTCTATTATTTATTGTTGAACTCTCATCTATGGC ATTACTTTCATAGAGAAAGACTTCCATCTTATTTCTCTGATTGTTCTCGTAATGTGGTTTCTTCCATCTAATTTCTCTGA ATATTTGGTTTATGGTCATGTCTCACCTCTATGCTTTAATTTTGCAGGTCCAAGAACATAATCATCCTCATATACTTCTC CTGCAAATTGGAAACACATTTTGCAAACTCCCTGGTGGTCGTCTCAAGCCAGGAGAGAATGGTAATTTCTTACTTCCTTA CCGAATATGTCTGAAAATAGCAGCTTGTGAATTATCCTAACGTACTTTGGGGGGTGGTGTGGTGTATTTACGTTGCTTAC AGAAATTGAGGGCTTGAAGAGAAAGTTGACCAGCAAGCTTGGTGCTAATTCACCGGCTCTTGTGCCTGACTGGCAGGTAT TATTATTTATATATCCACTAAGTAGAGACATTAAATTTCGTATTCTGTAAATCCTCATATTGTTGTTGCTCGTACTTCAT ACGCAACTTATGCTTGGAATCCTGCAGATTGGTGAATGTGTTGCAATCTGGTGGAGGCCAAATTTTGAAACCATAATGTA CCCATACTGCCCTCCTCATATAACAAAACCCAAGGTAATTTACAAAGACTATATCATTGTAATATTACATGTCCTAAGTT CTCTTAGTCCCAGCCTACAATATCATTGAATAACTTGTATGCAGGAGTGCAAGAAGCTCTTCCTTGTTCACTTGTCTGAG AGGGAATACTTTGCCGTGCCCAAAAACTTGAAACTGCTTGCTGTTCCATTGTTTGAACTCTATGACAATGTTCAGGTGTG GTCATTGTTTATGATTCTTTTTATCTATTGCTCGATTGTTGAATGAATTCTTTATTAGTTGCCTATTGGAAAAACGTTTG TTATCTAAAGCTGTTTCTTTGAAGTAAATGAATCCTATGAATTTGACGTTGGAGATTATCGGGCTCATCTAAATGTTTTC CCTTTAGGGTGCATCTTAAAAAGTTTTCATGATCATAGTATTTAGTTTAAAACTTATTCCTACAATTATGGCTGTCAATT AAAATATGGTTGAGTTTATGCTGTGTCTTATGAATTTTGTGTCACTTTGGTTGCAGAGATACGGGCCAGTTATATCCACC ATTCCTCAGCAGCTTTCCAGATTCCAGTTTAAAATGATCACTAATTGAACGTAATTTCAATTAGTTTCTTCCTTTTGTTA TCTTAAGAACTAGGATTGAGTTAGTACCTGATTATCATTGCATTAGACTGGCTAGAGAACTGAGTCTTTTTAAGAGAGAT TTATTTGATAGAGTAGTTACCTTTTTAAATAGAGTAGTTACATGATTATTATTTGTTATTTTCGTGGTCTATTTTTTAAC GGATTTGTATCCTGCTTGTCAAGCTTGAGTTATGCCCCCTAACTCTATCTGTATTAATTTGTTGGGCTATGGGTTGGTAT ATTGAGATTATCAACCCAAGATCATCAACTACGTAGGCAAAATTATTGATGAAAGGAATTTAGTGCCAAAATTTATACAC ATCTGAAATCACAATACAACACTCATGTGGTAAAATGTACAAGACAAAGCATGTATATGCAAGGTAGTTCAAGTCTAAAT AAATTTGTGTCGCACTACGCTAAAAACCACCTTAGGCATGAAGATTGTCTCACCCTTCTCTAATCATATCTCTAGTTGAT GTAGGAATCTTTTTTTTCTTCAACGAAATTGATGTAGGAACCTTAACACTTGATGTAGGAACCTTAACACTCCCTCATGT CCAAAACTAGGCATATGGATAAAAAGCCTCACTTTTATATAAATACCATTATCCCCATCATGGAATATATAGGATGCTAA ATTAACTTCATCAATTTCTCCTAAGACAGTATGTGGACCAGATTAATTTCATTAATATTTCTTTTACCACCATGAGTTAA GTGGATTCTTGTACTATAAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0301800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGTCATCTCAGGTGGTAAACACATACCCTCTTTCCAGCTACACCTTCGGTACCAAGGAGCCCAAGATGGAGAAAGA CACCTCCGTCGCCGATCGTCTCGCTCGCATGAAAGTCAACTATATGAAGGAAGGAATGAGGACCAGCGTTGAAGGAATTT TACTGGTCCAAGAACATAATCATCCTCATATACTTCTCCTGCAAATTGGAAACACATTTTGCAAACTCCCTGGTGGTCGT CTCAAGCCAGGAGAGAATGAAATTGAGGGCTTGAAGAGAAAGTTGACCAGCAAGCTTGGTGCTAATTCACCGGCTCTTGT GCCTGACTGGCAGATTGGTGAATGTGTTGCAATCTGGTGGAGGCCAAATTTTGAAACCATAATGTACCCATACTGCCCTC CTCATATAACAAAACCCAAGGAGTGCAAGAAGCTCTTCCTTGTTCACTTGTCTGAGAGGGAATACTTTGCCGTGCCCAAA AACTTGAAACTGCTTGCTGTTCCATTGTTTGAACTCTATGACAATGTTCAGAGATACGGGCCAGTTATATCCACCATTCC TCAGCAGCTTTCCAGATTCCAGTTTAAAATGATCACTAATTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0301800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGR LKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPK NLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFKMITN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13047:SF2
1 182 182 2.0E-136 –
PANTHER
PTHR13047
1 182 182 2.0E-136
IPR016706
PIRSF
PIRSF017888
1 200 200 8.5E-96
IPR016706
Gene3D
G3DSA:3.90.79.10
5 197 193 2.4E-90 –
Pfam
PF13869
6 193 188 1.3E-82
IPR016706
ProSiteProfiles
PS51462
46 171 126 8.906
IPR000086
SUPERFAMILY
SSF55811
53 152 100 1.68E-5
IPR015797

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003729
Molecular function MRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
Subterm of
GO:0005849
Cellular component MRNA cleavage factor complex Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
Subterm of
GO:0006378
Biological process MRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0301800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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