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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0302500 |
| Transcript ID | LotjaGi5g1v0302500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G05200.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6; TrEMBL-Plants: tr|A0A0L9VJ02|A0A0L9VJ02_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0302500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62064440..62065614) extracted from Lotus japonicus Gifu genome v1.2.
CTTCATTCATTCATTCCCTTCTCAATTCTCATTCCAATCACAAAAATGGAGGTAGGTTCCACACTGCACTTGAAGAAGCT GAACCTCCTCCTCCTCCTCCTCCTCTTAACTCACCATGGTGCTGTGGCGGCGGCGGCACAGTCGCCAATGCAACCAGCAG CGTCACGTACCACCGTATGGGACGTAACTTCCATCTGTGTCATCATCGGAGCCATAATTATAACTTTCCTCGTGGTCGCC GCCTTCTCAATGCTCCTCCACCGCTGCGTCCAGTCACAACGCAACGGACAGTGGCCGTACTGTCCACCGGGCGGTGGTGT TCGCCCTGATATCCTCCAAACATTCCCCACCTTCGTCTACTCCTCCGTCACCAGCCATCTCAAACATCCAGAGCCGCTTC AATGCGCCGTCTGCATCTCCGATTTCAACTCCGACGACACCCTCCGTCTCCTCCCTCAATGCAACCATGTCTTCCACCCT TCCTGCATCGACGCCTGGCTTTCCGCCCACTCCACCTGCCCTGTCTGCCGCGCCAATCTCAACTGCAGCTGCCATGGTAC CCCTGATTTCGCGATCTGGGTTGATAAGGAGGACAGCGTACGAGAATCTCCGAGGTGTGAGGTTTGTGATGAGGAAGGTA AAGGGGGTCTGAAAAAGGCGTTGAAATCGAAGAAGCTTCTGAGGTCGAATTCGACGGGTCATTCGCTGGTGGAAGAAGGG TCGTGTTTGGAGAGGTATACTCTGAGGGTGCCAGAGGATGTGAAGAAGTGTATTATGAGGAATCATGGTGAGATGTTGCA GCGTTCGGCAAGCTTCAATGGGAGATCGGTGAAAGGGTTTTGCTGGAGTGATAGTGAAGGGAGTAGCAAAGGGATCAGGA GGAATGGCATTAGGTTTGGAGGTTCTGGTTCTGCTGCAGTGAAAAGTCCTAGTGAATCCAGGTAGAATGACAAAGAAGAT GAAAAATGAAATTAATTGTTGTTAGTTTAATTAGACTTGGTTGAATAAATGGGTAATTTGAATGGAAATGAACTCCAGGA GGTTCTGTGATGCTCTATGATAGTCATAGATGAATGCATGAAGCAGAGGACTGAGTTTTTTTTTTTGTTAGGTGAAGATT GAGGTTTTTTGTGATTTTTTTTAAATCAAAATATATTGATAGATATGTTGAGAAA
CDS sequence (LotjaGi5g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTAGGTTCCACACTGCACTTGAAGAAGCTGAACCTCCTCCTCCTCCTCCTCCTCTTAACTCACCATGGTGCTGT GGCGGCGGCGGCACAGTCGCCAATGCAACCAGCAGCGTCACGTACCACCGTATGGGACGTAACTTCCATCTGTGTCATCA TCGGAGCCATAATTATAACTTTCCTCGTGGTCGCCGCCTTCTCAATGCTCCTCCACCGCTGCGTCCAGTCACAACGCAAC GGACAGTGGCCGTACTGTCCACCGGGCGGTGGTGTTCGCCCTGATATCCTCCAAACATTCCCCACCTTCGTCTACTCCTC CGTCACCAGCCATCTCAAACATCCAGAGCCGCTTCAATGCGCCGTCTGCATCTCCGATTTCAACTCCGACGACACCCTCC GTCTCCTCCCTCAATGCAACCATGTCTTCCACCCTTCCTGCATCGACGCCTGGCTTTCCGCCCACTCCACCTGCCCTGTC TGCCGCGCCAATCTCAACTGCAGCTGCCATGGTACCCCTGATTTCGCGATCTGGGTTGATAAGGAGGACAGCGTACGAGA ATCTCCGAGGTGTGAGGTTTGTGATGAGGAAGGTAAAGGGGGTCTGAAAAAGGCGTTGAAATCGAAGAAGCTTCTGAGGT CGAATTCGACGGGTCATTCGCTGGTGGAAGAAGGGTCGTGTTTGGAGAGGTATACTCTGAGGGTGCCAGAGGATGTGAAG AAGTGTATTATGAGGAATCATGGTGAGATGTTGCAGCGTTCGGCAAGCTTCAATGGGAGATCGGTGAAAGGGTTTTGCTG GAGTGATAGTGAAGGGAGTAGCAAAGGGATCAGGAGGAATGGCATTAGGTTTGGAGGTTCTGGTTCTGCTGCAGTGAAAA GTCCTAGTGAATCCAGGTAG
Protein sequence (LotjaGi5g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVGSTLHLKKLNLLLLLLLLTHHGAVAAAAQSPMQPAASRTTVWDVTSICVIIGAIIITFLVVAAFSMLLHRCVQSQRN GQWPYCPPGGGVRPDILQTFPTFVYSSVTSHLKHPEPLQCAVCISDFNSDDTLRLLPQCNHVFHPSCIDAWLSAHSTCPV CRANLNCSCHGTPDFAIWVDKEDSVRESPRCEVCDEEGKGGLKKALKSKKLLRSNSTGHSLVEEGSCLERYTLRVPEDVK KCIMRNHGEMLQRSASFNGRSVKGFCWSDSEGSSKGIRRNGIRFGGSGSAAVKSPSESR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 14 | 22 | 9 | - | – | |
| PANTHER | 21 | 244 | 224 | 1.4E-56 | – | |
| PANTHER | 21 | 244 | 224 | 1.4E-56 | – | |
| Phobius | 23 | 31 | 9 | - | – | |
| Phobius | 32 | 46 | 15 | - | – | |
| Phobius | 47 | 71 | 25 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 72 | 299 | 228 | - | – | |
| Gene3D | 94 | 170 | 77 | 1.4E-18 | ||
| SUPERFAMILY | 108 | 168 | 61 | 6.06E-18 | – | |
| Pfam | 119 | 162 | 44 | 2.7E-13 | ||
| CDD | 119 | 162 | 44 | 7.79562E-17 | – | |
| SMART | 120 | 161 | 42 | 3.0E-6 | ||
| ProSiteProfiles | 120 | 162 | 43 | 12.681 | ||
| MobiDBLite | 270 | 299 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0302500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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