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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0322400 |
| Transcript ID | LotjaGi5g1v0322400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta xylosidase; TAIR: AT3G19620.1 Glycosyl hydrolase family protein; Swiss-Prot: sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5; TrEMBL-Plants: tr|K7N397|K7N397_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0322400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64092631..64096564) extracted from Lotus japonicus Gifu genome v1.2.
CAACTATTGTTTCCAATATGATCTAATTCCACGGTTAATATCATAGGGATAGGTTGGACCATGCAGGGGAGGCTTTTGTT TCATTTAAGCATTGTAGAGTCATTCTAAACGTAAACTAGGAATCAAACCATCCACTTTCAACACCATATCTCAATCCACA AGCAACAACCTGTTAGCATCAAAAAGGAAAAAAATGCATAAACTCTGAGTCCAAAACTTTTACTATATAAATCAACCTTA CCAATTACCATCTCTCAAACAACACAACTTAATTTTTTAGCAAACAACACTATGAAAAGCAATCTTTTGTTCTTATCCCT TTTTCTTTCACTTCTTGTACTTCTTCCAATTCTAACTTCTAGCCAAAAACATGCATGTAATAAGGCCTCTCCTAAAACTA GTAACTTCCCATTTTGCGACACCACCTTATCTTATGAAGCCAGGGCCAAGGACTTGGTGTCACGGTTAACACTCCAAGAA AAGGCACAGCAATTAGTAAACCCTTCTTCCGGTATTGCAAGACTCGGTGTTCCTTCTTATGAATGGTGGTCGGAGGCGCT TCACGGTGTCTCCAATTTAGGACCGGGGACACGTTTTAACAGAACAGTGCCCGGCGCCACTAGCTTCCCAGCAGTGATTC TATCAGCTGCAAGCTTCAATGCAACTCTATGGTACAATATGGGACAGGTTGTTGGATTAACATTTGCTGTACACTCAAAA AGTTTGTTGTAACTGTTTCTTATCAAGTTTGTTAGTTTGTTACAATCTGTTATAACTGTTTCTATCACTGTGTGTTTTGA TAGGTTGTGTCAACTGAGGCAAGAGCTATGTACAATGTGGACTTGGCTGGTTTAACATTTTGGAGTCCTAATGTGAATGT GTTCCGCGACCCGAGATGGGGGCGTGGCCAGGAAACTCCAGGGGAGGATCCATTGGTGGTGTCTAGATATGCTGTGAAGT ATGTTCGTGGGTTACAAGATGTGGAAGATGAAGAAAGTATTAAAGCTGATAGGCTTAAGGTTTCAAGCTGTTGTAAGCAT TACACTGCTTATGATGTTGATAACTGGAAAGGCGTTGATCGCTTCCATTTTGATGCAAAGGTAAAAAGAAGTTTCAGTGG GTACCAGAAATTGACTGGTCCAAACATGCTATGAGATGCATTATGACTTGGAGAAATGATTATTGTCATGATTGGGACTT GTTGCAGGTGACCAAGCAAGACTTGGAGGATACTTATCAGCCTCCATTTAAGAGCTGTGTGGTGGAGGGGCATGTTAGCA GTGTCATGTGTTCTTATAATAGGGTGAATGGAATTCCTACATGTGCTGATCCAGACCTCCTCAAAGGGGTGATCAGAGGC CAGTGGGGTCTAGATGGGTTTGTACCTTCCATCTCCAACTAGTCATTTGATTTTTTTCATAACATGTCACTAAGACACTA ACTTAGTGCATTTTTGGAAACCCTTCGACAATTGAATATGAAGTCAAAATCAATTTCGGGGAGAAACTTTTGAGAGTAGC TTATGGATTGCAAAATTGATTCTGATAAAAGAGAAGCTGATCTAAACATGCTATTAAACAATATATAACAATTTCTACTT TTACTAACCATGATGAACAACACATTATATATGACACAGTTTCATTCTTTGCTTTTGTAATTTGAGATAACCAAGTGAAA CTCCCTGCTTTGTGCACAGATATATTGTTTCAGATTGTGATTCAGTGCAAGTATATTACGAGTCAATTCATTACACTGCA ACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCAGGTAGAATAGAACTAAATCCCCACCTGCAAAAAGTTCTACAATT TTCTGATGACTAGTTTTTGGATTACTAAATGTTACATTATTGTGCAGGTTTAAACATGAACTGTGGAGACTATCTAAGAA AATACACTGCAAATGCAGTGAAGTTGAAAAAAGTAGATGTATCTACAGTAGACCAGGCCTTGGTGTACAACTACATAGTC CTAATGAGATTAGGCTTCTTTGATAACCCCAAGTCACTTCCATTTGCAAATCTTGGACCATCTGATGTATGTACTAAAGA AAATCAACTATTGGCCCTAGAAGCTGCAAAGCAAGGAATAGTTTTGTTGGAAAATAGTGGGGTTCTTCCCTTATCCAAGA CTAACATAAAAAATTTGGCTGTGATTGGACCAAATGCAAATGCCACCACAGTTATGATCAGCAACTATGCTGGTATACCT TGCAGATACACTAGCCCTTTACAAGGACTACAGAAGTACATTTCTTCTGTGACTTATGCACCTGGTTGTGGCAATGTTAA ATGTGGTGATCAGAGTCTATTTGCAGCGGCAACCAAGGCTGCAGCACCTGCTGATGCAGTGGTTCTAGTTGTGGGATTAG ACCAGTCTATTGAAGCTGAGGGTCTGGACAGAGTGAACCTGACATTACCTGGATTTCAAGAGAAGCTGGTGAAAGATGTT GCTGATGCTACTAAAGGGAAAGTGATTTTGGTCATAATGGCAGCTGGTCCAATTGACATTTCTTTCACTAAAAGTATCAG AAACATTGGGGGGATACTGTGGGTAGGGTATCCTGGTCAAGCTGGTGGGGATGCCATAGCCCAAGTGATATTTGGAGAAT ACAACCCAGGTACTTTGTGTTTTTGCTACATTTATCATTATATATTTTTCATTGAACATAATCAATTTTGAAAAACTTCA ACAGAACTTCACAACCTTACCCCAAAAAACCAATTTTTTTGTATCCAAACATAAATCACTCCACTTTCAACTCAATTTTA CTATAATCAATTTTATCCAAAATCGATCCAAGCACGCACAAAGTGGTCTAGACTTCGATCCTTGTTGTCCCTTTCGGAAT AGTTGGTTCATGAAATAATGTTTTGTTACTTTTGTTGATATCAATCAATCTTTAGACACTAACAGTTAACAACTTCTAGG TGGAAGGTCCCCTTTTACATGGTATCCACAATCTTATGCTGATCAAGTGCCTATGACAGACATGAACATGAGAGCCAACA GCAGTAGAAATTTCCCTGGAAGGACCTACAGGTTTTACAATGGAAACTCCCTCTATGAATTTGGCCATGGATTAAGCTAC TCCACATTTTCCACCTACATTGCATCTGCTCCCTCCACCATAATGATTGAGCCGAACACATCCATGTCTCAACCTCATAA TAATATCTTTGAGTCTCTATCTGATGGTCAAGCAATTGATATTTCCACCATAAGTTGCTTGGATTTGACATTTTTTCTTG TCATCGGTGTGAAGAACACTGGACCATTTAATGGTTCCCATGTGGTGTTGGTGTTCTGGGAGCCACCAACTTCAGAGTTG GTGACTGGGGCTCCAATTAAGCAATTAATAGGATTTGAAAGAGCACATGTTATGGTGGGGATGACAGAGTTTGTGACATT GGAAATAGATATATGCCAATTGCTAAGTAATGTGGATAGTGATGGGAAAAGAAAGCTGATCATTGGAAAGCACACCCTTT TGGTTGGCTCTTCCAGTGAGACACAGGTTAGGCACCAAATTGATATTAGTCTTTCAGGGAATGGGATGGAGAAGAAGTCA TATCTGGATGAATCTATATAATTACTAGCCATTGCAAATGTGTCCCCTAGCTAGTTACTCACATCATGTAGTAAGAACAT GTTTCATGAGTTTGATAACAGTATGTGGAAGTGGAAGAGTGCTCAGTATATCTGATACTGTACTAGATATTAATATATAT ATTTATAAAAAGCATATTGATGCTTAATTAATAGAATAATTAAGGTTTGAGTTAAGATATATTTGATCCCCAAGAGTTGT AATTTGTGTTGCTTAATTGTTTTGGTCTAACAAGTTGGCCTCTGAAAATGATAACATCATAATTAAGTTAATCCTTATGT TGATCAATATCAAA
CDS sequence (LotjaGi5g1v0322400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGCAATCTTTTGTTCTTATCCCTTTTTCTTTCACTTCTTGTACTTCTTCCAATTCTAACTTCTAGCCAAAAACA TGCATGTAATAAGGCCTCTCCTAAAACTAGTAACTTCCCATTTTGCGACACCACCTTATCTTATGAAGCCAGGGCCAAGG ACTTGGTGTCACGGTTAACACTCCAAGAAAAGGCACAGCAATTAGTAAACCCTTCTTCCGGTATTGCAAGACTCGGTGTT CCTTCTTATGAATGGTGGTCGGAGGCGCTTCACGGTGTCTCCAATTTAGGACCGGGGACACGTTTTAACAGAACAGTGCC CGGCGCCACTAGCTTCCCAGCAGTGATTCTATCAGCTGCAAGCTTCAATGCAACTCTATGGTACAATATGGGACAGGTTG TGTCAACTGAGGCAAGAGCTATGTACAATGTGGACTTGGCTGGTTTAACATTTTGGAGTCCTAATGTGAATGTGTTCCGC GACCCGAGATGGGGGCGTGGCCAGGAAACTCCAGGGGAGGATCCATTGGTGGTGTCTAGATATGCTGTGAAGTATGTTCG TGGGTTACAAGATGTGGAAGATGAAGAAAGTATTAAAGCTGATAGGCTTAAGGTTTCAAGCTGTTGTAAGCATTACACTG CTTATGATGTTGATAACTGGAAAGGCGTTGATCGCTTCCATTTTGATGCAAAGGTGACCAAGCAAGACTTGGAGGATACT TATCAGCCTCCATTTAAGAGCTGTGTGGTGGAGGGGCATGTTAGCAGTGTCATGTGTTCTTATAATAGGGTGAATGGAAT TCCTACATGTGCTGATCCAGACCTCCTCAAAGGGGTGATCAGAGGCCAGTGGGGTCTAGATGGATATATTGTTTCAGATT GTGATTCAGTGCAAGTATATTACGAGTCAATTCATTACACTGCAACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCA GGTTTAAACATGAACTGTGGAGACTATCTAAGAAAATACACTGCAAATGCAGTGAAGTTGAAAAAAGTAGATGTATCTAC AGTAGACCAGGCCTTGGTGTACAACTACATAGTCCTAATGAGATTAGGCTTCTTTGATAACCCCAAGTCACTTCCATTTG CAAATCTTGGACCATCTGATGTATGTACTAAAGAAAATCAACTATTGGCCCTAGAAGCTGCAAAGCAAGGAATAGTTTTG TTGGAAAATAGTGGGGTTCTTCCCTTATCCAAGACTAACATAAAAAATTTGGCTGTGATTGGACCAAATGCAAATGCCAC CACAGTTATGATCAGCAACTATGCTGGTATACCTTGCAGATACACTAGCCCTTTACAAGGACTACAGAAGTACATTTCTT CTGTGACTTATGCACCTGGTTGTGGCAATGTTAAATGTGGTGATCAGAGTCTATTTGCAGCGGCAACCAAGGCTGCAGCA CCTGCTGATGCAGTGGTTCTAGTTGTGGGATTAGACCAGTCTATTGAAGCTGAGGGTCTGGACAGAGTGAACCTGACATT ACCTGGATTTCAAGAGAAGCTGGTGAAAGATGTTGCTGATGCTACTAAAGGGAAAGTGATTTTGGTCATAATGGCAGCTG GTCCAATTGACATTTCTTTCACTAAAAGTATCAGAAACATTGGGGGGATACTGTGGGTAGGGTATCCTGGTCAAGCTGGT GGGGATGCCATAGCCCAAGTGATATTTGGAGAATACAACCCAGGTGGAAGGTCCCCTTTTACATGGTATCCACAATCTTA TGCTGATCAAGTGCCTATGACAGACATGAACATGAGAGCCAACAGCAGTAGAAATTTCCCTGGAAGGACCTACAGGTTTT ACAATGGAAACTCCCTCTATGAATTTGGCCATGGATTAAGCTACTCCACATTTTCCACCTACATTGCATCTGCTCCCTCC ACCATAATGATTGAGCCGAACACATCCATGTCTCAACCTCATAATAATATCTTTGAGTCTCTATCTGATGGTCAAGCAAT TGATATTTCCACCATAAGTTGCTTGGATTTGACATTTTTTCTTGTCATCGGTGTGAAGAACACTGGACCATTTAATGGTT CCCATGTGGTGTTGGTGTTCTGGGAGCCACCAACTTCAGAGTTGGTGACTGGGGCTCCAATTAAGCAATTAATAGGATTT GAAAGAGCACATGTTATGGTGGGGATGACAGAGTTTGTGACATTGGAAATAGATATATGCCAATTGCTAAGTAATGTGGA TAGTGATGGGAAAAGAAAGCTGATCATTGGAAAGCACACCCTTTTGGTTGGCTCTTCCAGTGAGACACAGGTTAGGCACC AAATTGATATTAGTCTTTCAGGGAATGGGATGGAGAAGAAGTCATATCTGGATGAATCTATATAA
Protein sequence (LotjaGi5g1v0322400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSNLLFLSLFLSLLVLLPILTSSQKHACNKASPKTSNFPFCDTTLSYEARAKDLVSRLTLQEKAQQLVNPSSGIARLGV PSYEWWSEALHGVSNLGPGTRFNRTVPGATSFPAVILSAASFNATLWYNMGQVVSTEARAMYNVDLAGLTFWSPNVNVFR DPRWGRGQETPGEDPLVVSRYAVKYVRGLQDVEDEESIKADRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDT YQPPFKSCVVEGHVSSVMCSYNRVNGIPTCADPDLLKGVIRGQWGLDGYIVSDCDSVQVYYESIHYTATPEDAVALALKA GLNMNCGDYLRKYTANAVKLKKVDVSTVDQALVYNYIVLMRLGFFDNPKSLPFANLGPSDVCTKENQLLALEAAKQGIVL LENSGVLPLSKTNIKNLAVIGPNANATTVMISNYAGIPCRYTSPLQGLQKYISSVTYAPGCGNVKCGDQSLFAAATKAAA PADAVVLVVGLDQSIEAEGLDRVNLTLPGFQEKLVKDVADATKGKVILVIMAAGPIDISFTKSIRNIGGILWVGYPGQAG GDAIAQVIFGEYNPGGRSPFTWYPQSYADQVPMTDMNMRANSSRNFPGRTYRFYNGNSLYEFGHGLSYSTFSTYIASAPS TIMIEPNTSMSQPHNNIFESLSDGQAIDISTISCLDLTFFLVIGVKNTGPFNGSHVVLVFWEPPTSELVTGAPIKQLIGF ERAHVMVGMTEFVTLEIDICQLLSNVDSDGKRKLIIGKHTLLVGSSSETQVRHQIDISLSGNGMEKKSYLDESI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 18 | 14 | - | – | |
| TMHMM | 5 | 22 | 18 | - | – | |
| PANTHER | 5 | 782 | 778 | 0.0 | – | |
| PANTHER | 5 | 782 | 778 | 0.0 | – | |
| Phobius | 19 | 24 | 6 | - | – | |
| Phobius | 25 | 794 | 770 | - | – | |
| Gene3D | 35 | 374 | 340 | 7.6E-87 | ||
| SUPERFAMILY | 39 | 397 | 359 | 1.58E-89 | ||
| Pfam | 108 | 350 | 243 | 1.2E-39 | ||
| PRINTS | 112 | 131 | 20 | 2.7E-6 | ||
| PRINTS | 205 | 221 | 17 | 2.7E-6 | ||
| PRINTS | 279 | 297 | 19 | 2.7E-6 | ||
| Gene3D | 383 | 629 | 247 | 2.0E-62 | ||
| Pfam | 398 | 628 | 231 | 9.8E-53 | ||
| SUPERFAMILY | 398 | 631 | 234 | 9.94E-51 | ||
| Gene3D | 670 | 778 | 109 | 2.7E-12 | ||
| SMART | 695 | 767 | 73 | 4.1E-12 | ||
| Pfam | 695 | 767 | 73 | 2.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0322400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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