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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0342500 |
| Transcript ID | LotjaGi5g1v0342500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G04310.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A0L9U0Z0|A0A0L9U0Z0_PHAAN Pectate lyase; Found in the gene: LotjaGi5g1v0342500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65953593..65960004) extracted from Lotus japonicus Gifu genome v1.2.
GAGATAACTTCACATTAACCATTTAGATATGGGTTTGGATTAGCCTCTAGTGTTTCTCTTTCTCTGCAGTTTTCCTTCCT TATAGTCCAGGTTGATTTCTCAGCCGCAATGCCTAGAAAGAAAGAAGGACTAACAAGCTAGGCAAGGAATGAAAGTGTCT ACAAGGGAGGGAGAACTGAAATTGCTCCTCTTCCTCTGCCTTCCTTCTCCTCTGTTTTCTTGTCATCTATTATCACACAA AATAATATCCTCCAATCTCTTTCTTCAAATTGAAATAAACAAATCCCCTAAAATCAAAACCCCACCAAAAAGGCAACTTA ATTTATTCATTTTACAAATAATAACCCAAGCCCATTATTTGTATAAACTTGCTTTATTATAAAAACACAATCCCATTTCC CCAAAATTTCAAGCTTCCTAAATAGCTTCTTTCTCTGCATTGAAGAGGAAGACATTCTAAACTAAACCTAAAGGAGGAAC CATTTTCACAAACACAAAAACAGACAAAAACCCTCATTCCACCCCTTAACCCCTTCCTACCCCCCACACCCAAAAGCCAT TATTGTTCATTGAAGAATGCTTCCCATAACCTGCATTCTTTTAATGTTCCTTCTCAGTTCATCTTTCTCTCCCCCAATCA TAGCCAAAACTTTCTCCAATCTCACTTTGCCCCACCAACACCCTTACCCTGAAGCTGTTGTTCACCAAGTTCAGAGGTAA ACTAAGCAACAACATTAACATCTCTGCATTCTTCATTCTTCATCATTACTAACATTTTCTTCACAAACCCAACTGAAATT TAAGGTTGTTTTGTTCTAATGTTGCAGGGAAATCAATGTCTCACTCACAAGAAGGCAAATGCTCTCAAAGGACCAATCTG CTGCTCCTTCCTGTTTGACAGGAAACCCAGTTGACGATTGCTGGCGGTGCGACACAAACTGGGCAGCAAACCGCCAGAAG CTAGCGGAATGCGGCATAGGATTCGGCCGCGCCGCCATGGGAGGCAAAAACGGCCAGATCTATGTTGTTACAGACTCCTC CGACCGTGACCCGGCGAACCCAGTTCCAGGCACACTCCGCCACGCCGTCATCCAAGACGAGCCACTCTGGATCGTGTTCG CCGCCGACATGACAATCAACCTCCGTCACGAGCTAATCTTCAACAGCTACAAAACCGTCGACGGGCGCGGCGCGAATGTC CAAATCACCGGCCACGGCTGCATCACACTCCAATACATCTCCAACGTGATCATCCACAACATCCATGTCCACCACTGCAA ACCCTCCGGGAACACGAACATACGCGCGAGTCCCACACACGTTGGGTGGAGAGGCGTATCGGACGGCGACGGGATCTCCA TCTTCGGCGCTCGGAACATCTGGATCGACCATTGCTCGTTGTCGTACTGCGCCGATGGGTTGATTGATGCGATAATGGGA TCGACGGCGATAACGATTTCGAACAACCATTTTGCTCACCATGATGAGGTGATGCTGCTTGGGCACAATGATAAGTATAC GCCGGATAGGGGAATGCAGGTGACGATTGCGTTCAACCATTTTGGTGCTGGTTTGGTGCAGCGAATGCCAAGGTGTAGGC TCGGTTATATTCATGTGGTGAACAATGATTTCACGCAGTGGGAGATGTATGCCATCGGCGGCAGCGCTAACCCCACCATC AACAGCCAGGGTAACCGTTATACTGCTCCGGCGGATAATAATGCCAAAGAGGTAAGGTTAGTTTGGTAATTATCAACTTC TTTTACTATTAAATTACATGATTAATAATTAATTATGATAACATAATGTAATAATCTAGGTGGTGGTAATATTTTTCTTC CCGAACTTATATGTCATTTCACTCTTACCAGTTAGGATGTTGATCACAATATGTTATTTCTTTTTCGAAATGTTGTAAAA TGTAAGTCAAGTAATTAGTGCATAAACTAGCTAAGGAAGTTTTATGTGAACTTAAGAACTAATTTGACAGGCATATGATA ACTTGCTAGTGATCACATTGAGGTGGTTTTTCTAGTAAAAAAACTTTTGATTGAATCATATACTAAATGCTTAACAAGTG GAGCTATCTATATGACCTTATGGGTTATAGTGACCAATTTGACCCTTCAATCCTTCTAAATTAGTGCATGATTAATGTTT AATATGATAATGTAACTTTGTTTCTTGGAAATGTAAATTGATTTTGTGGGGGTGGGAAGTTCTTTGTTTGTTTGACTCCT GTTTGAAACGAATATATGCTTGTTTTGGTATTCATGTTTCACTTGCATGGGTGGCGCGTGATTTTGAAATGCTAATAATG TGCTTGGTAATGGTTGCTACTTGCTAGCTACTAGTAGTAGGGTAGTAGCTAGAGTAGGATGTGATGTGTTGTGGGAAAAA GAAAAGGTGAAGGTGGGGTTTCGTTTTGTGTAACTTTTTGGAATGGGTGGTTGCAGGTGACAAAGCGCGTGGACACGAAT GAAGGCCAGTGGAGTGATTGGAATTGGAAGACGGAGGGGGATATAATGGTAAATGGAGCATTCTTTGTGCCTTCAGGTGC GGGGGCCAGTGCTCAGTATGCAGAAGCCACCAGCTTGCAAGCTAAATCCGCCGTGGCAATCGACCAGCTCACCATGTACT CAGGAGTCTTCGGCGACCCCAGGTAAACAATATTACTATAATACCCTCCTCACTTTTCTTATAACGCGTGAAGCAATATT TATTACTAAATAATTAGATTTTAGATGCCCTAGCAACGGACATTACCTGTCATATTAACTGGCATCAGAAAGGTTATTCT CGTCTTTTGGTTGAATAATATCTTATGATAGGAAAGGTTAATATCGTCTTTTTAGTAGTTTTAAATTACGAGAATGTCCC TCCACATGCATGCCGGGGCCCACGTCCTTTTCTTTTATTATCTGGTGAAGGACGCGGTACAACACGACACCAACTATGGG GACAAGTGGTTTCGATTCTCATTGGTTCATTTTTCTGCGAAAAGCTGTGACTGTGTAGAGGAATATTATTATTTTAACAT GCTAGTTCCACTTTGGTGTTTCCTAAACTTAGGTTTATGCTAAATCCCACTTTACAAGGTGGGTAGTAAATTGCAATAGA GTAAAACAAGATCGGGATTAGCGATTTTAATTAACAATAAGGACATTGGGTGAAAAAGTTGGGCTTTTTTAGCAAATGCA CGTGGTTGTGAGATCATTGGGAATCTATCTATCCTCCTCTCTAGCTTATGGGCCAACGTTTACACAGTTTATTTGTCTCT ATTCATCTCTTTTCTTATGCATGCACGGGATAAGACCTTTTTTTGGGACATGTTGAAAACACATAACTTTGTATTGATTC CCTTTAGCTAGTGTGTATTTGGGGAGAGAAATTCAGAAACTTTTGTTGAGCACTTGAGCTAGATTAGTACCCGAAAAATC ACATTAGTTAGGAAGACAAGTGGGAAATGAAAGTGCCAAAAAAACCCGCTATATCTGGATTTGACAGGTTGGAAGTGGCG GTGCAGGTGTGAAAGGGGTTGAGTGGGGGGGGGGGGGTGAAATGGATTTTCTGTCAACAAATCTAAGCCTTGTGGTCCTT CATAAGGCTCTCATTTTAAGATATGTATACCATTTCATCATGCATGGTGAAAAATATGTGCTCACTGATCTTAATCGAAC GGCTCAGATCTCTTGAATGCTTGAACGCAGTGTCCTTGACTCCAGGAAACTGGAATGTGTGGAGCGGAGGTTAAAAACTA GGTTTGGAGAGTAGAGCCCCACGTCAGATTTTTGTTATGGGCTGAAATTATATTACTTTTTATCTGCTTTCCAGCAAGTA AGTGTGGGGCCTCTCATAGTATAATCAATAATGTGTATTTGGGCCCAATTTGATTCCATACAAGTTACTCACAGCTCACA ATTTAAGTACTTGATCAGTATTGGGAAAGGGACTCCTCCTTGTTAACTTGCCCATGCTGTCTCCCACTTTTACCCTTTAC TCTTAGCTTTTTAGTTCTTACATTGTTTAGGAAACCAACATGCATCCATTGAGTACCTGGTAATTATACTTACTGAGTAA CTAACTTTCTCTTAGAAATCATCAATGTGGCAAAATCTCACTTCTCTGTTAATGTGTCGAGATGTGTGTTTTCCTGTTTG CATCAATGCTGCTTGCGTCAACACAAATGTTAAAACAAAGTGGCACTAATGTTTCTTTTTAGCATAACTAGCTAGTACTC ACTACCCAGTCTACCACAATGCACCGATATCCAACTACTTTGCGTTTGGATTTTCATTGAATTCAATACCGGTTCATGTT TAAGTTAAAGTGGAAAAACTATGCTTCTTTGATGTCTAACGCAAATCTAAAACCAAACATACACTTCGAGTGTGTTTGGT TTCTCATTACCTTCCATTGAAAGTGCATTGTGCACTACAATGACAAATTTCACATTGCAAGAACCTAAACATGGAAGGGG AGTGCCTTCCATTAATGTCCAGGATTAGGAAATCGTTTGTTACTGTTTAGAGTGACTTCCTTTTACATAAATTTCAAACA GCTACCTAATTTAATTTATTTCGTATTTGACTTCTTTGCCTGGATTTATTGAATCTAGTCACGCATGTTTCTTTAACACA TGTGCATCTTATCTCCTGCTCTTTTCCATTGGTTCCTTTAACTCATTCTCACACCGTTTTCTCTAAAGGTTTGTCTTTCT TACGTAGGTCCACTACCTCTTTCCTGCTCTCGTCGCTATACACTTTTTAATTAGTAGCAACTAAGGCGCCAACAATTAAG CATTGACACTCTTGAAAAAGGTTCACTTACTCTGATGTGTTCATGGCTCAGGGGAGGTTAGCTCCCCCAACAAATTATAT CCATTAAGTTAGTGTTTGGGATATTTGAGAGCGAGCATCGGCATAAGGTTAAAATTGTTGGCATGTGACTTTGCAGTCAT AGGTTTGGAATCAGTCTCTTGCAAAAATGTAAGGTAAGATTGCCTGCATTAGATCCACAAAGTGGGTGCATCCCCTCTCT AGACCTCGTGCATAGCAGAAGCTCTGTAATGTTTGCTCTGTTTTAGTGTGTTTGGGATATAGGGTTGTTCGGTGAAATCT TAAAAGTCAGTCACTGAATTTGAGTCATTCGATTAAAAATCAGTCACTGAATTCTATGAGTTGTATGATCTTTGATCAAA CGGCTAAGGTCACTTGAATGTGTGAATCTTGGATTGCTCTTACGTCAAGGAACCCAAATCCTTTCAACGAGAACAAATTT TCATCTCAGTCCATAAAAAGAGTTCAATTTTATCTTAATGTGTGTGCTAACATCAATTTGCATAGGTACCAATTCAAACA TAGCCTTACCTGATATTTTGACTTTCCTTCTAGACTTCTAGTTGAAGCAACTATGAATGATTTGATGTAGCAAAGGGTCT AAACAAGATGTCCACTACCTATGATGTAATCTAAGATGGATGTTTATGTTCTTTTTCCTTCAATTTAAAGCTAGTTTGTT TGTTTTTTCTCTGTTTCATTTACTATTGTTAGCTCAATGTTTTCATCATTATTGCTGTTTTCTTCCACTTGATATTCTAT GTCTACCAAATGAGAAAAAGTACCTTTCGTTGAGTGCTGATGACTATATTATTGAATAGGGATAATGGGGATCTATTCCC CGGTTTCAACGGCGGTGGGACCGTGACCGGAGCCTCTAGCAGAGGCAGCAGTGGTGGGTCCTCCAGCAGTGACGATGGAG ACTTCTTTGGGATGATATTCAGAGGCAGCACCAGCAGCCAAGCACCGCCCTCTTCACCCTCGTCAACCATTATAATTGTT TCAACCTTTTTGTCTCTTTTAATTATTTTCATTTTGGATTCTACCACCAACCATGCTATTATTCTATTATCATTACTATG ATCCCAAAATTGGGATTTGGGAGTGGGAAAAGGATTCCTTTGATACAATTTGTCAAATGGAAAAGAGAAAGATCAAAGTT TCTATAATTTGTTTTCAATTTAGAAAATTAGAAATCATTATTATGTACACAGCTCCTGGAAACGCAACAATAGTTTCATT TCAAAAATCTATAAAAATTAAATAGAGCAGCTAGGTGCAGCATGCTTGGTAGTCGCCTCAAATGTACAGTTCGTTGTACT GAATTTAGTTTGTTAACTTGTGGGTTTGTCTCCTTTGATGTTTTACACTTTTACTAAAAGGGATGAATTTGGATAAAAGA TGTAATGTTACTACACTTTTACTTAATAAAACATACATATATACGTGCATACAATTGAGTCGTGACCGTATAATCATACA TGGAAGTAATCATTGACCAGGACATTCTTCAGTTAAGCAGGAGATTTTTTTTTACCAAGGACTTGGTATGTAATCCACTC TTATATGACAAA
CDS sequence (LotjaGi5g1v0342500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCCATAACCTGCATTCTTTTAATGTTCCTTCTCAGTTCATCTTTCTCTCCCCCAATCATAGCCAAAACTTTCTC CAATCTCACTTTGCCCCACCAACACCCTTACCCTGAAGCTGTTGTTCACCAAGTTCAGAGGGAAATCAATGTCTCACTCA CAAGAAGGCAAATGCTCTCAAAGGACCAATCTGCTGCTCCTTCCTGTTTGACAGGAAACCCAGTTGACGATTGCTGGCGG TGCGACACAAACTGGGCAGCAAACCGCCAGAAGCTAGCGGAATGCGGCATAGGATTCGGCCGCGCCGCCATGGGAGGCAA AAACGGCCAGATCTATGTTGTTACAGACTCCTCCGACCGTGACCCGGCGAACCCAGTTCCAGGCACACTCCGCCACGCCG TCATCCAAGACGAGCCACTCTGGATCGTGTTCGCCGCCGACATGACAATCAACCTCCGTCACGAGCTAATCTTCAACAGC TACAAAACCGTCGACGGGCGCGGCGCGAATGTCCAAATCACCGGCCACGGCTGCATCACACTCCAATACATCTCCAACGT GATCATCCACAACATCCATGTCCACCACTGCAAACCCTCCGGGAACACGAACATACGCGCGAGTCCCACACACGTTGGGT GGAGAGGCGTATCGGACGGCGACGGGATCTCCATCTTCGGCGCTCGGAACATCTGGATCGACCATTGCTCGTTGTCGTAC TGCGCCGATGGGTTGATTGATGCGATAATGGGATCGACGGCGATAACGATTTCGAACAACCATTTTGCTCACCATGATGA GGTGATGCTGCTTGGGCACAATGATAAGTATACGCCGGATAGGGGAATGCAGGTGACGATTGCGTTCAACCATTTTGGTG CTGGTTTGGTGCAGCGAATGCCAAGGTGTAGGCTCGGTTATATTCATGTGGTGAACAATGATTTCACGCAGTGGGAGATG TATGCCATCGGCGGCAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTATACTGCTCCGGCGGATAATAATGCCAA AGAGGTGACAAAGCGCGTGGACACGAATGAAGGCCAGTGGAGTGATTGGAATTGGAAGACGGAGGGGGATATAATGGTAA ATGGAGCATTCTTTGTGCCTTCAGGTGCGGGGGCCAGTGCTCAGTATGCAGAAGCCACCAGCTTGCAAGCTAAATCCGCC GTGGCAATCGACCAGCTCACCATGTACTCAGGAGTCTTCGGCGACCCCAGGGATAATGGGGATCTATTCCCCGGTTTCAA CGGCGGTGGGACCGTGACCGGAGCCTCTAGCAGAGGCAGCAGTGGTGGGTCCTCCAGCAGTGACGATGGAGACTTCTTTG GGATGATATTCAGAGGCAGCACCAGCAGCCAAGCACCGCCCTCTTCACCCTCGTCAACCATTATAATTGTTTCAACCTTT TTGTCTCTTTTAATTATTTTCATTTTGGATTCTACCACCAACCATGCTATTATTCTATTATCATTACTATGA
Protein sequence (LotjaGi5g1v0342500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPITCILLMFLLSSSFSPPIIAKTFSNLTLPHQHPYPEAVVHQVQREINVSLTRRQMLSKDQSAAPSCLTGNPVDDCWR CDTNWAANRQKLAECGIGFGRAAMGGKNGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLRHELIFNS YKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGARNIWIDHCSLSY CADGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYTPDRGMQVTIAFNHFGAGLVQRMPRCRLGYIHVVNNDFTQWEM YAIGGSANPTINSQGNRYTAPADNNAKEVTKRVDTNEGQWSDWNWKTEGDIMVNGAFFVPSGAGASAQYAEATSLQAKSA VAIDQLTMYSGVFGDPRDNGDLFPGFNGGGTVTGASSRGSSGGSSSSDDGDFFGMIFRGSTSSQAPPSSPSSTIIIVSTF LSLLIIFILDSTTNHAIILLSLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 426 | 426 | 1.1E-241 | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 426 | 426 | 1.1E-241 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 470 | 447 | - | – | |
| SUPERFAMILY | 64 | 388 | 325 | 1.04E-94 | ||
| Gene3D | 72 | 414 | 343 | 8.2E-121 | ||
| PRINTS | 95 | 112 | 18 | 1.2E-73 | ||
| PRINTS | 119 | 144 | 26 | 1.2E-73 | ||
| SMART | 147 | 344 | 198 | 1.0E-91 | ||
| Pfam | 154 | 336 | 183 | 4.6E-21 | ||
| PRINTS | 155 | 171 | 17 | 1.2E-73 | ||
| PRINTS | 219 | 240 | 22 | 1.2E-73 | ||
| PRINTS | 299 | 318 | 20 | 1.2E-73 | ||
| PRINTS | 321 | 340 | 20 | 1.2E-73 | ||
| PRINTS | 363 | 387 | 25 | 1.2E-73 | ||
| PRINTS | 392 | 415 | 24 | 1.2E-73 | ||
| Phobius | 471 | 489 | 19 | - | – | |
| Phobius | 490 | 503 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0342500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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