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LotjaGi5g1v0343800.3

Overview

Field Value
Gene ID LotjaGi5g1v0343800
Transcript ID LotjaGi5g1v0343800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Vesicle-associated membrane protein, putative; TAIR: AT3G54300.1 vesicle-associated membrane protein 727; Swiss-Prot: sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727; TrEMBL-Plants: tr|A0A1J7GS43|A0A1J7GS43_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0343800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:66088753..66091898) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTCAGAGGGGTTTGATATATAGCTTTGTTGCGAAAGGAACGGTTGTTTTAGCTGAGCACACGCAGTATACGGGGAA TTTCAGTACCATTGCTGTTCAATGTTTGCAGAAGCTGCCTTCGAATAGCAGCAAATATACGTACTCGTGCGATGGTCACA CGTTTAACTTCCTCTTAGATAATGGATTCGGTATTGGTTCTTCTTGGTTGTTTTTTTTATGTGTTACTAGATCTGCTGCT TTGGTTGTTATGTGCTGATGTTTGAAAGTTGTTCTCTTCTTCGCAGTGTTCCTCGTGGTTGCAGATGAATCGGTTGGAAG GAGTGTTCCTTTTGTGTTTCTTGAACGGGTGAAGGATGACTTTATGCAGCGATATGGTGCTAGCATTAAGAATGCTAGTG ACCATCCACTTGCTGACGATGACGATGATGATGATTTATTCGAAGACAGATTTAGCATTGCATATAATCTTGATAGAGAA TTTGGGTTTGTTGTTTATGCTTGATAAATTTTTAAGTTTTTTTAACTTCTTTGTAATTTGGTTTTTAACATTTTGATCAT GTTATACAGACCAGCTCTTAAGGAACATATGCAGTATTGCCTGAACCATCCAGAAGAAATGAGCAAACTATCAAAATTGA AGGCTCAAATAACTGAGGTCAAGGGGATAATGATGGATAATATTGAGAAGGTATGTGATACTTTGCTTAATGGCACACAA TCTTTTGGTTGCATGATATGTTTTCATCTCTGTAGAAATACTGTCTTTGGAAGTACTATTCTATTTTTTTGTGCATTTTT GCTTGGAAGTGGTTTTGAATTTGGGACGTGGAGGAGGGAGGTTCTGAATAAGGATGATGATATTCGTATTGCAATGCTGT TTAAAACTAGTGGAATTTTATGTTGCTTCTTGATGGGACTCATAAAAGGGTATAGATCTATATTTGATAGGGGAAAGACT TGTGTGTAAACTGTAAACCACCCACTACAATGACATTTTAGCATCCTTTCGTTGCCGAAACCTTTGATTTGACAAACCTG ACATTCACCAAGTAATGTAGAATGATTTAGATTAAAACGATTTGTCTTTTGACATGATATATGGTAGGACATTATAATGT AGTTAGGTCCATGTAGCCAACACTACATAGTGGGAAAATGTTGTGTTTTTGTTGCTGTAACAACTAACAATTATTTTCTC AATATTTTTCTTATCAGTTTTACCCTCTTTCAATAACAATCACTCATCTGCCTTGCCCTTATATCTAGTCTCAAAGTGAT TCTGTATGATCGCACTATTCAATTGGCTTCTTAGTTTTTAAAAATTCAATGTGAAAAGAAAAATTATAAAAAGATAGCTA ACCTTATGTTCAATCATGAAAAAGAAGCATAGTTTTTATACTTTTTCTTTAAGCCCATAAAGGTATTGAGCTGCCCTGGA GGCAGTAGGTGAAGATTGGCAGTTGAGTCATCTATACATGCATTTATTTGGAAACTCCTATGGAGCCAAAGTGTTATAAG GTTTTCTAGTCATGAAAACTAAAAAGTAGTTTTTGCGCATGCATCAGAATCAGAAATTAGACTTATCTGGTCAATAATAA TGACATGGTTGTTCAAGGAATAGTTGTGTTACTTAATAGGATTTTTACCCTCTCCTATCATAGGACCATCTTATTGGAGA GAGAGACGGAAATTTTATTGTAGAGGGATCATCCTTGGTGGGTTATAACTTATAAGGTCCGCTAGCTATATTTAAAATCG TTTCTTCTCTCCGGCAAGACCTTCTTCCTCTTCTTTCATAACAAGAAGAGAGATTCGAGATCCAATTTTAAGTGAACATC TCCGGCCTTAGGCTGTGGCCTCGTAAGAAATATTTGGGTTTGATTTCATGGATGTCTTTCAATGGTACTTCAATAATTTT TCTTTTGATTACTCATAAGATGTATATGCATATAAGCATAAGTTTATTGATATTGATAATTATGCCAACAGAAAGGATGC TGATTCCAATGGTAGGCTTGGTGAATTAATATTTAGAAAGGATCTATAATTGGACTGACATGAAATTGAGAGATGTTTCT TTATCACATCTAAACTGTAAGGGACTATTAAATTGAAACTAGATTAAAGTTGTGTTAAATACTCGGAGGGAGTTTTGGAC CCCATAGTGGTTCTATCTGGCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAC TAGAATAAGGCATCACACGTGCAACAGGATCAGGAAAATGCTTGGATACGAAACTGAATCACGTATATTCATGAAAAACA TTATGTGGTGCACTGGTGCAGTTTATGATCTAAGGGTCAGAACTTAGAAGCTAATAAATACATTTATTTTACTATTTTAT AATAAAATTTAAATTCCAAGGGCCAGGATCCTCTGCTGTACTTTAAACTGCCAAGGATCTGGAACCAGATGGATGGATGC ATTAGTTGCGAATTGCAATATACTGTATTTTAATTGATAGAATCAGAAGAAACCGTTTTGCCTTTTCAACTTTATTTTTT CCAAAAAAGTCATGCTGCTATAAAGCACATTTAAACAACATTTGCTCTGACTGTTTTGTAGGTTTTGGATCGTGGAGAGA AAATTGAACTTCTGGTAGACAAAACAGAAAGCTTGCAGTTCCAGGTATGTATTATTGCCCTAATCAAACTAGTCTGAACT GTGAAATTATATATTGCATGTTTATAAATCTTTCTATAATTGATTCTAAAATCAAAATCGTTTTTGATGAGAAACCTCAG TGAGTAGCCTTTAGGTGCCAGAATTGATTATGTGAAAATAGAAGTTGATCCGAACATTGCTAATACTGATGTGATTGTAT TTTGCATCAAAATTTAGGCTGACAGCTTCCAGAGGCAGGGAAGGCAGCTGAGAAGGAAGATGTGGTTGCAGAATCTCCAG ATGAAGCTGATGGTGGGAGGAGGAATCCTTATCTTAGTTATAATATTGTGGGTTATTGCTTGTGGGGGTTTCAAATGTTG ATGAAACTATAAGAAATTGATGTGTGTGTATTTGGGCACACAAAGGATAATGTACAAAATGATATGCTACTCGTACATGG AATTTATCTTTACTGTCAGACTGTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0343800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTCAGAGGGGTTTGATATATAGCTTTGTTGCGAAAGGAACGGTTGTTTTAGCTGAGCACACGCAGTATACGGGGAA TTTCAGTACCATTGCTGTTCAATGTTTGCAGAAGCTGCCTTCGAATAGCAGCAAATATACGTACTCGTGCGATGGTCACA CGTTTAACTTCCTCTTAGATAATGGATTCGTGTTCCTCGTGGTTGCAGATGAATCGGTTGGAAGGAGTGTTCCTTTTGTG TTTCTTGAACGGGTGAAGGATGACTTTATGCAGCGATATGGTGCTAGCATTAAGAATGCTAGTGACCATCCACTTGCTGA CGATGACGATGATGATGATTTATTCGAAGACAGATTTAGCATTGCATATAATCTTGATAGAGAATTTGGACCAGCTCTTA AGGAACATATGCAGTATTGCCTGAACCATCCAGAAGAAATGAGCAAACTATCAAAATTGAAGGCTCAAATAACTGAGGTC AAGGGGATAATGATGGATAATATTGAGAAGGTTTTGGATCGTGGAGAGAAAATTGAACTTCTGGTAGACAAAACAGAAAG CTTGCAGTTCCAGCTTCCAGAGGCAGGGAAGGCAGCTGAGAAGGAAGATGTGGTTGCAGAATCTCCAGATGAAGCTGATG GTGGGAGGAGGAATCCTTATCTTAGTTATAATATTGTGGGTTATTGCTTGTGGGGGTTTCAAATGTTGATGAAACTATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0343800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSQRGLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYTYSCDGHTFNFLLDNGFVFLVVADESVGRSVPFV FLERVKDDFMQRYGASIKNASDHPLADDDDDDDLFEDRFSIAYNLDREFGPALKEHMQYCLNHPEEMSKLSKLKAQITEV KGIMMDNIEKVLDRGEKIELLVDKTESLQFQLPEAGKAAEKEDVVAESPDEADGGRRNPYLSYNIVGYCLWGFQMLMKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21136
1 192 192 2.6E-115 –
PANTHER
PTHR21136:SF169
1 192 192 2.6E-115 –
Gene3D
G3DSA:3.30.450.50
5 186 182 1.8E-58 –
SUPERFAMILY
SSF64356
6 102 97 3.97E-25
IPR011012
ProSiteProfiles
PS50859
6 133 128 24.994
IPR010908
CDD
cd14824
7 140 134 1.19149E-31 –
SMART
SM01270
31 113 83 5.0E-22
IPR010908
Pfam
PF13774
32 102 71 3.0E-20
IPR010908
SUPERFAMILY
SSF58038
144 191 48 8.9E-15 –
Pfam
PF00957
148 190 43 3.0E-14
IPR001388
CDD
cd15843
149 191 43 1.03659E-19 –
ProSiteProfiles
PS50892
149 205 57 14.591
IPR042855
PRINTS
PR00219
154 173 20 4.0E-9
IPR001388
ProSitePatterns
PS00417
167 186 20 -
IPR001388
PRINTS
PR00219
174 193 20 4.0E-9
IPR001388

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0343800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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