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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345300 |
| Transcript ID | LotjaGi5g1v0345300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|A0A151TQ40|A0A151TQ40_CAJCA Germin-like protein subfamily 3 member 2; Found in the gene: LotjaGi5g1v0345300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66189257..66189889) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAGATGAAGAAAGTAGCAGTCATGTTAATTCTCTTGTTTTTCATCATTGCTGCTTTTGCTTCTGATCCAGATCCAGT TATGGATTACTGCATAGCCAAATCACCAGACAACAAAAGCTTCACTTGCAAGAACTCATCCAAAGCAACAGTGGAAGATT TCACCTTCTCTGGTATAAAGCTCCCAGGGAACTTCAAGGAAACTGGCTTTTCTGGTATGGCAGTGAACTCAAATGTCTTT CCAGGTTTGAACACTCTTGGGATGTCATTTGTGAGAGCAGATTTTGATGTTGGTGGTGTCAATGTGCCTCACTTCCATCC AAGAGCAACTGAGGTTGCTTTTGTGCTTGAGGGAAAGATTTATTCAGGATTTGTTGACACCAAGAACAAAGTTTTTGCCA AAGTGTTGGAGAAAGGAGAGGTCATGGTGTTTCCAAGAGGGCTTGTGCACTTTCAGATGAATGTTGGAGATGGGCCTGCA ACTATTTTGGGCAGTTTTGATAGCCAAAACCCTGGCGCACAGAAGATTCCAAATGCAATTTTTGGTTCTGATATCAAAGA GGAGCTTTTGGAGAAGGCTTTTGGGTTGAGTTCTAAGGAGCTTTCCAAGTTGAAGAAGAGATTTTCCTCATAG
CDS sequence (LotjaGi5g1v0345300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAAGTAGCAGTCATGTTAATTCTCTTGTTTTTCATCATTGCTGCTTTTGCTTCTGATCCAGATCCAGTTATGGA TTACTGCATAGCCAAATCACCAGACAACAAAAGCTTCACTTGCAAGAACTCATCCAAAGCAACAGTGGAAGATTTCACCT TCTCTGGTATAAAGCTCCCAGGGAACTTCAAGGAAACTGGCTTTTCTGGTATGGCAGTGAACTCAAATGTCTTTCCAGGT TTGAACACTCTTGGGATGTCATTTGTGAGAGCAGATTTTGATGTTGGTGGTGTCAATGTGCCTCACTTCCATCCAAGAGC AACTGAGGTTGCTTTTGTGCTTGAGGGAAAGATTTATTCAGGATTTGTTGACACCAAGAACAAAGTTTTTGCCAAAGTGT TGGAGAAAGGAGAGGTCATGGTGTTTCCAAGAGGGCTTGTGCACTTTCAGATGAATGTTGGAGATGGGCCTGCAACTATT TTGGGCAGTTTTGATAGCCAAAACCCTGGCGCACAGAAGATTCCAAATGCAATTTTTGGTTCTGATATCAAAGAGGAGCT TTTGGAGAAGGCTTTTGGGTTGAGTTCTAAGGAGCTTTCCAAGTTGAAGAAGAGATTTTCCTCATAG
Protein sequence (LotjaGi5g1v0345300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKVAVMLILLFFIIAAFASDPDPVMDYCIAKSPDNKSFTCKNSSKATVEDFTFSGIKLPGNFKETGFSGMAVNSNVFPG LNTLGMSFVRADFDVGGVNVPHFHPRATEVAFVLEGKIYSGFVDTKNKVFAKVLEKGEVMVFPRGLVHFQMNVGDGPATI LGSFDSQNPGAQKIPNAIFGSDIKEELLEKAFGLSSKELSKLKKRFSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 207 | 203 | 3.0E-99 | – | |
| PANTHER | 5 | 207 | 203 | 3.0E-99 | – | |
| Phobius | 16 | 19 | 4 | - | – | |
| Phobius | 20 | 208 | 189 | - | – | |
| Gene3D | 20 | 208 | 189 | 2.0E-68 | ||
| SUPERFAMILY | 51 | 206 | 156 | 4.36E-42 | ||
| SMART | 55 | 200 | 146 | 7.4E-41 | ||
| Pfam | 60 | 198 | 139 | 1.5E-40 | ||
| ProSitePatterns | 97 | 110 | 14 | - | ||
| PRINTS | 102 | 122 | 21 | 2.3E-25 | ||
| PRINTS | 132 | 152 | 21 | 2.3E-25 | ||
| PRINTS | 165 | 180 | 16 | 2.3E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi5g1v0345300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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