Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345900 |
| Transcript ID | LotjaGi5g1v0345900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G35130.3 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130; TrEMBL-Plants: tr|I1NFB8|I1NFB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66253984..66257855) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCATGTATATTTGTCCTTACCTTACTCTATTTGTCTAATCTTTTTCGTTTTTTATGGAAAAAAAACTGACACCATCT CTCACCTTGAAAAAATCCATCCATTCATTATCCAGACTCAGAGACTTTCTCATACTTGTACCTTCATGTAAGCTCCATTA TTTCTCACCCATGATTGTACATAATGACATTTATCATATAGATTGTTATGACAGGTCATTTTGCAACTTCATTTGAAGTG GCATTAGTTATACTTAACTGATGCTGTTAATCTGCAGGTTAAATTCTATATGCACAGTGAAGTTGAACCACACATTTATA GAACCAAGAGCTTGCATTAATGAATTTGAATGGAAATCAAATGATGCCAGTGGTGTGGCTCTGGAGAAGTTCAAGAGAGA CAGTGTTTACATTGACAAAGCTGGCAAGTTAAGGAACTTCAATCACAAGAAACTGTCCAGGAAAAAATGTAAGTAATGCT TTGCTGAAACACAAGTTCATACATTGAATTGGAAACATGTGTTAATTGGAATGTGTGTCATTTTCTCTGACCAGGTGGTT CTTTGAGAGGACGAGGATGGAAATTCGGTTCTGGGTTTGTGGATGGGATTTTCCCTGTTTTGAGCCCAACTGCAAAGAAG ATTATGGATTATCTTCAAAAGGGTGTAGATACTGAGAGCATTTGGGGTTCCCTGGACATGCTTCAAGCATCTCTTGAAAT ATGGGATGACATTTTAACTGTGTCTGTTCAACTTCGGATGAGGAAACAGTGGGATTCAATCATTTCGGTGAGAATATCTG CATGCCCTCTAGCAGTGCTTATTTGAGCTTATCTTACAGCATAAGGACGCTTCTCAAATTAGCTTATGAATAATTACTTA ATGAAGGTGTTTACCCAAACATACCTTAGTTTGTTTTTCATATCTCAATGGATTGCCATTTCAGGATTATTCATGTAACA CAGTACTTATTGACACCTCGAGACATAAGTGTTCAGATTGTGCCTAAACAGTTAATCAGACAAGTATCAAAGGAGTGTTT TTGCACTTTTTCTGAAAGACCTTTTAATGTGGTTACCTGCTCTAACTACCTTTCTGCCTCTAGCAGATTTTCCTTACCTA GTACAATTTTTAGCTATCAAAATATTTGAAGAATGAAGGTTGTCTTCTCTTTCCTCTTGTAAGGTTTTACCATTGAATCC ATCATATGTTCATGATTCATGTGTCAGTTGTTAGAAATAATTAAAACCAATTCATGTATCTCCATCCAAAAAGTCTAAGC AGTTAAGTGAAAATACATGAATGTTGTTATTATTTCGAACACAAGCATCTATTTAGCAGGAATTGGTATGGGACAATATC ATATGTATGTGGAAATGGCTCTTGTTTTTGTTTATTGCAACTTTTTCTAGTTTTGGGTTTTGCTCTTTGAATATTATAGG ACATAACCGAAAAAAAATTGTGCAGATATGCAGATGGATACTTCTAAGAAGCTCCTTCAAGCAAGATGTTATATGCTATA ATTTACTGATAGATGCTTTTGGGCAAAAGTTTCTATACAAGGAGGCAGAATCCACATATCTTCAGCTTCTTGAGGCTAGA TGCATTCCTAATGAAGATACTTATGCCCTTCTTATAAAGGCCTACTGCTTGTCCGGGCTGCTTGAAAAAGCTGAAGCTGT CTTTGTTGAAATGAAAAATTATGGCCTTCCTTCAAGTAGGTTCCTGCATCAAAATTTTATACCATTGTTTCGAACAACTT GTATATACATACATTTATGAAGTGGAAATTTGATCCTCGAAAATAGTTGAACATTTATCAGAATGAATAACTCAGGTGCA GTTGTATACAACTCTTACATAAATGGATTAATGAAAGGAGGAAATCCAAACAAAGCAGAAGAGATTTTCTTAAGGATGAA GAGGGATGGCTGCAAACCATCTACTGAAACTTATACCATGTTGATAAACTTATATGGGAAGGTCAGCTTATTAGATCTTC ACATTGCCCACATGTAGCATGGGGTCCATAACTTCTCTAATTCTTGACTGTGAAAGTTTGGAACTGAACTTCAAATTGTT TTGAAATATGAATTTTGTGCAGGATGGTAAATCTTTTATGGCCTTAAAAGTGTTCAATGAAATGCTGAGCCATAAGTGCA AACCTAATATTTGCACTTACACTGCTCTGGTGAATGCATTTGCCAGAGAGGGACTATGTGAGAAGGCAGAGGAAGTATTT GAGCAAATGCAAGAAGCTGGGCTTGAACCTGATGTATATTCTTACAATGCCCTCATGGAAGCTTACAGGTTGTTATAGAA GATGCTATAAATGCCTTCTTGATTGATGAATGCATATGCCTTTAAACTATTTGGTTCCACTTGGTATGTTAGAGGGAAAA AAATTAAATAGTACATACATAGCCTCCTACCTTAAAAGCAAGACAGTAACATTTATGTTAAGGTATTCACATTTTTAATT TTTTTTAAGATTGAAAAAATGGAAAGAATAATAGTCAGTTTGTCACATTGTTAGAGTGCATTTACCGAATCTTCAGTACT ACAGGAGTACTGAAAATTTTCTCCGGAAATGTGCTTATGTTAATAACACTACCACTTAGTCTTTGTAGTGCTTTAAATTA GTCTTATGGCCTTTTATAAGAGCTACATTATGATGTCGCATTGACTCCCTTTGCTGTGTTGATAGGTGCTCTTCCCATTC CATTTTTTTTCATTTCTCTGTTATCTTAAAGAGGATGCCATGTACTTTGAAACCTTGATGTGAGTTATTTTCTGCTATAA ATTTATATCTAAGAAAGATATCAAGATTTTTCTTCCCCCTACAGTCGTGCAGGTTTTCCTTATGGGGCTGCAGAAATTTT TTCATTAATGCAGCACATGGGATGTGAACCAGATAGAGCCTCCTATAATATCTTGGTAGATGCATATGGCAGAGCAGGTT TTCTAAATGGTATTTACCTTGCATTAAAAGTAATCATTTTATTTTGCTTATTTACATGTTCTATTATACTAATGGATTGA AACACATGCTGAGCAGATTGCTTTCCTTTCTTGTCTTTTTTGAATGATTGAAACAGATGCCGAAGCTGTATTTGAAGACA TGAAAAGAGTGGGAATAACACCAACAATGAAATCCCACATGGTACTTTTATCTGCCTTTTCCAAAACTGGCAATGTGAGT AAATGTGAGGACATTCTCAACCAAATGTGCAAATCTGGCCTGAAACTAGACACTTTTGTTCTAAACAGCATGCTGAACTT GTATGGACGGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGATCATGTGAAGCTGATATTA GCACATACAATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGCCTATTTCGATTGTTGCAT AGTAAAGGTTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAAGAAGCTTTATGTAAGGTG CTTAGAAATATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGGTGCTCCTTGCAGCATGCT CCAATGAAGATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGGATATCAAAACTGTTATGACACCAGTA TAAGTTGCTTGAACTTTGATATTGTAGTCAACAATAATGGATTATATATCTGAAACTTTTATTTAAAAAAATGTTCCATC CCCAGGAAGCATTTCCTGACCCATTAGTTGACAAAATTCTGACCTACAAAGAATAAGAGTTTTTTAATATTCTCTATGCC TATTTAGCCAACAAGACTAATTTCAGTTGGGA
CDS sequence (LotjaGi5g1v0345900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAAATTCTATATGCACAGTGAAGTTGAACCACACATTTATAGAACCAAGAGCTTGCATTAATGAATTTGAATGGAA ATCAAATGATGCCAGTGGTGTGGCTCTGGAGAAGTTCAAGAGAGACAGTGTTTACATTGACAAAGCTGGCAAGTTAAGGA ACTTCAATCACAAGAAACTGTCCAGGAAAAAATGTGGTTCTTTGAGAGGACGAGGATGGAAATTCGGTTCTGGGTTTGTG GATGGGATTTTCCCTGTTTTGAGCCCAACTGCAAAGAAGATTATGGATTATCTTCAAAAGGGTGTAGATACTGAGAGCAT TTGGGGTTCCCTGGACATGCTTCAAGCATCTCTTGAAATATGGGATGACATTTTAACTGTGTCTGTTCAACTTCGGATGA GGAAACAGTGGGATTCAATCATTTCGATATGCAGATGGATACTTCTAAGAAGCTCCTTCAAGCAAGATGTTATATGCTAT AATTTACTGATAGATGCTTTTGGGCAAAAGTTTCTATACAAGGAGGCAGAATCCACATATCTTCAGCTTCTTGAGGCTAG ATGCATTCCTAATGAAGATACTTATGCCCTTCTTATAAAGGCCTACTGCTTGTCCGGGCTGCTTGAAAAAGCTGAAGCTG TCTTTGTTGAAATGAAAAATTATGGCCTTCCTTCAAGTGCAGTTGTATACAACTCTTACATAAATGGATTAATGAAAGGA GGAAATCCAAACAAAGCAGAAGAGATTTTCTTAAGGATGAAGAGGGATGGCTGCAAACCATCTACTGAAACTTATACCAT GTTGATAAACTTATATGGGAAGGATGGTAAATCTTTTATGGCCTTAAAAGTGTTCAATGAAATGCTGAGCCATAAGTGCA AACCTAATATTTGCACTTACACTGCTCTGGTGAATGCATTTGCCAGAGAGGGACTATGTGAGAAGGCAGAGGAAGTATTT GAGCAAATGCAAGAAGCTGGGCTTGAACCTGATGTATATTCTTACAATGCCCTCATGGAAGCTTACAGTCGTGCAGGTTT TCCTTATGGGGCTGCAGAAATTTTTTCATTAATGCAGCACATGGGATGTGAACCAGATAGAGCCTCCTATAATATCTTGG TAGATGCATATGGCAGAGCAGGTTTTCTAAATGATGCCGAAGCTGTATTTGAAGACATGAAAAGAGTGGGAATAACACCA ACAATGAAATCCCACATGGTACTTTTATCTGCCTTTTCCAAAACTGGCAATGTGAGTAAATGTGAGGACATTCTCAACCA AATGTGCAAATCTGGCCTGAAACTAGACACTTTTGTTCTAAACAGCATGCTGAACTTGTATGGACGGTTAGGCCAATTTG GAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGATCATGTGAAGCTGATATTAGCACATACAATATCTTGATAAAT AGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGCCTATTTCGATTGTTGCATAGTAAAGGTTTGAAACCTGATGT GGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAAGAAGCTTTATGTAAGGTGCTTAGAAATATTTGAAGAAATGA TTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGGTGCTCCTTGCAGCATGCTCCAATGAAGATCAGACTGAGCAG GTTACTACTGTGATTAGAACAATGGACAAGGATATCAAAACTGTTATGACACCAGTATAA
Protein sequence (LotjaGi5g1v0345900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNSICTVKLNHTFIEPRACINEFEWKSNDASGVALEKFKRDSVYIDKAGKLRNFNHKKLSRKKCGSLRGRGWKFGSGFV DGIFPVLSPTAKKIMDYLQKGVDTESIWGSLDMLQASLEIWDDILTVSVQLRMRKQWDSIISICRWILLRSSFKQDVICY NLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKG GNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVF EQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITP TMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILIN RYGQAGFIDKMEGLFRLLHSKGLKPDVVTWTSRIGAYSKKKLYVRCLEIFEEMIDSGCYPDGGTAKVLLAACSNEDQTEQ VTTVIRTMDKDIKTVMTPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 112 | 240 | 129 | 8.0E-24 | ||
| SUPERFAMILY | 135 | 363 | 229 | 4.45E-7 | – | |
| PANTHER | 138 | 297 | 160 | 3.2E-97 | – | |
| Pfam | 156 | 203 | 48 | 8.3E-8 | ||
| ProSiteProfiles | 156 | 190 | 35 | 9.087 | ||
| TIGRFAM | 158 | 192 | 35 | 9.6E-4 | ||
| ProSiteProfiles | 191 | 225 | 35 | 11.488 | ||
| TIGRFAM | 194 | 224 | 31 | 2.8E-6 | ||
| ProSiteProfiles | 226 | 260 | 35 | 12.463 | ||
| Pfam | 227 | 271 | 45 | 8.5E-13 | ||
| TIGRFAM | 228 | 261 | 34 | 3.0E-9 | ||
| Gene3D | 241 | 350 | 110 | 5.9E-36 | ||
| ProSiteProfiles | 261 | 295 | 35 | 11.235 | ||
| TIGRFAM | 264 | 297 | 34 | 5.1E-9 | ||
| PANTHER | 280 | 400 | 121 | 3.2E-97 | – | |
| Pfam | 295 | 343 | 49 | 5.8E-14 | ||
| ProSiteProfiles | 296 | 330 | 35 | 13.263 | ||
| TIGRFAM | 298 | 332 | 35 | 4.0E-10 | ||
| ProSiteProfiles | 331 | 365 | 35 | 12.156 | ||
| TIGRFAM | 333 | 366 | 34 | 1.4E-7 | ||
| Gene3D | 351 | 465 | 115 | 3.8E-29 | ||
| Pfam | 361 | 394 | 34 | 3.6E-10 | ||
| ProSiteProfiles | 366 | 400 | 35 | 13.11 | ||
| TIGRFAM | 369 | 401 | 33 | 1.4E-8 | ||
| PANTHER | 386 | 568 | 183 | 3.2E-97 | – | |
| ProSiteProfiles | 401 | 435 | 35 | 8.769 | ||
| TIGRFAM | 407 | 437 | 31 | 1.5E-5 | ||
| Pfam | 407 | 433 | 27 | 0.0019 | ||
| ProSiteProfiles | 436 | 470 | 35 | 8.879 | ||
| TIGRFAM | 439 | 471 | 33 | 0.0011 | ||
| Pfam | 440 | 465 | 26 | 0.065 | ||
| Gene3D | 466 | 577 | 112 | 1.0E-22 | ||
| ProSiteProfiles | 471 | 505 | 35 | 11.641 | ||
| Pfam | 473 | 503 | 31 | 2.2E-5 | ||
| TIGRFAM | 474 | 507 | 34 | 2.0E-8 | ||
| Pfam | 505 | 553 | 49 | 6.5E-8 | ||
| ProSiteProfiles | 506 | 540 | 35 | 11.17 | ||
| TIGRFAM | 508 | 541 | 34 | 4.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0345900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…