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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345900 |
| Transcript ID | LotjaGi5g1v0345900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G35130.3 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130; TrEMBL-Plants: tr|A0A0B2PPY6|A0A0B2PPY6_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi5g1v0345900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66254212..66257666) extracted from Lotus japonicus Gifu genome v1.2.
TCATTTGAAGTGGCATTAGTTATACTTAACTGATGCTGTTAATCTGCAGGTTAAATTCTATATGCACAGTGAAGTTGAAC CACACATTTATAGAACCAAGAGCTTGCATTAATGAATTTGAATGGAAATCAAATGATGCCAGTGGTGTGGCTCTGGAGAA GTTCAAGAGAGACAGTGTTTACATTGACAAAGCTGGCAAGTTAAGGAACTTCAATCACAAGAAACTGTCCAGGAAAAAAT GTAAGTAATGCTTTGCTGAAACACAAGTTCATACATTGAATTGGAAACATGTGTTAATTGGAATGTGTGTCATTTTCTCT GACCAGGTGGTTCTTTGAGAGGACGAGGATGGAAATTCGGTTCTGGGTTTGTGGATGGGATTTTCCCTGTTTTGAGCCCA ACTGCAAAGAAGATTATGGATTATCTTCAAAAGGGTGTAGATACTGAGAGCATTTGGGGTTCCCTGGACATGCTTCAAGC ATCTCTTGAAATATGGGATGACATTTTAACTGTGTCTGTTCAACTTCGGATGAGGAAACAGTGGGATTCAATCATTTCGG TGAGAATATCTGCATGCCCTCTAGCAGTGCTTATTTGAGCTTATCTTACAGCATAAGGACGCTTCTCAAATTAGCTTATG AATAATTACTTAATGAAGGTGTTTACCCAAACATACCTTAGTTTGTTTTTCATATCTCAATGGATTGCCATTTCAGGATT ATTCATGTAACACAGTACTTATTGACACCTCGAGACATAAGTGTTCAGATTGTGCCTAAACAGTTAATCAGACAAGTATC AAAGGAGTGTTTTTGCACTTTTTCTGAAAGACCTTTTAATGTGGTTACCTGCTCTAACTACCTTTCTGCCTCTAGCAGAT TTTCCTTACCTAGTACAATTTTTAGCTATCAAAATATTTGAAGAATGAAGGTTGTCTTCTCTTTCCTCTTGTAAGGTTTT ACCATTGAATCCATCATATGTTCATGATTCATGTGTCAGTTGTTAGAAATAATTAAAACCAATTCATGTATCTCCATCCA AAAAGTCTAAGCAGTTAAGTGAAAATACATGAATGTTGTTATTATTTCGAACACAAGCATCTATTTAGCAGGAATTGGTA TGGGACAATATCATATGTATGTGGAAATGGCTCTTGTTTTTGTTTATTGCAACTTTTTCTAGTTTTGGGTTTTGCTCTTT GAATATTATAGGACATAACCGAAAAAAAATTGTGCAGATATGCAGATGGATACTTCTAAGAAGCTCCTTCAAGCAAGATG TTATATGCTATAATTTACTGATAGATGCTTTTGGGCAAAAGTTTCTATACAAGGAGGCAGAATCCACATATCTTCAGCTT CTTGAGGCTAGATGCATTCCTAATGAAGATACTTATGCCCTTCTTATAAAGGCCTACTGCTTGTCCGGGCTGCTTGAAAA AGCTGAAGCTGTCTTTGTTGAAATGAAAAATTATGGCCTTCCTTCAAGTAGGTTCCTGCATCAAAATTTTATACCATTGT TTCGAACAACTTGTATATACATACATTTATGAAGTGGAAATTTGATCCTCGAAAATAGTTGAACATTTATCAGAATGAAT AACTCAGGTGCAGTTGTATACAACTCTTACATAAATGGATTAATGAAAGGAGGAAATCCAAACAAAGCAGAAGAGATTTT CTTAAGGATGAAGAGGGATGGCTGCAAACCATCTACTGAAACTTATACCATGTTGATAAACTTATATGGGAAGGTCAGCT TATTAGATCTTCACATTGCCCACATGTAGCATGGGGTCCATAACTTCTCTAATTCTTGACTGTGAAAGTTTGGAACTGAA CTTCAAATTGTTTTGAAATATGAATTTTGTGCAGGATGGTAAATCTTTTATGGCCTTAAAAGTGTTCAATGAAATGCTGA GCCATAAGTGCAAACCTAATATTTGCACTTACACTGCTCTGGTGAATGCATTTGCCAGAGAGGGACTATGTGAGAAGGCA GAGGAAGTATTTGAGCAAATGCAAGAAGCTGGGCTTGAACCTGATGTATATTCTTACAATGCCCTCATGGAAGCTTACAG GTTGTTATAGAAGATGCTATAAATGCCTTCTTGATTGATGAATGCATATGCCTTTAAACTATTTGGTTCCACTTGGTATG TTAGAGGGAAAAAAATTAAATAGTACATACATAGCCTCCTACCTTAAAAGCAAGACAGTAACATTTATGTTAAGGTATTC ACATTTTTAATTTTTTTTAAGATTGAAAAAATGGAAAGAATAATAGTCAGTTTGTCACATTGTTAGAGTGCATTTACCGA ATCTTCAGTACTACAGGAGTACTGAAAATTTTCTCCGGAAATGTGCTTATGTTAATAACACTACCACTTAGTCTTTGTAG TGCTTTAAATTAGTCTTATGGCCTTTTATAAGAGCTACATTATGATGTCGCATTGACTCCCTTTGCTGTGTTGATAGGTG CTCTTCCCATTCCATTTTTTTTCATTTCTCTGTTATCTTAAAGAGGATGCCATGTACTTTGAAACCTTGATGTGAGTTAT TTTCTGCTATAAATTTATATCTAAGAAAGATATCAAGATTTTTCTTCCCCCTACAGTCGTGCAGGTTTTCCTTATGGGGC TGCAGAAATTTTTTCATTAATGCAGCACATGGGATGTGAACCAGATAGAGCCTCCTATAATATCTTGGTAGATGCATATG GCAGAGCAGGTTTTCTAAATGGTATTTACCTTGCATTAAAAGTAATCATTTTATTTTGCTTATTTACATGTTCTATTATA CTAATGGATTGAAACACATGCTGAGCAGATTGCTTTCCTTTCTTGTCTTTTTTGAATGATTGAAACAGATGCCGAAGCTG TATTTGAAGACATGAAAAGAGTGGGAATAACACCAACAATGAAATCCCACATGGTACTTTTATCTGCCTTTTCCAAAACT GGCAATGTGAGTAAATGTGAGGACATTCTCAACCAAATGTGCAAATCTGGCCTGAAACTAGACACTTTTGTTCTAAACAG CATGCTGAACTTGTATGGACGGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGATCATGTG AAGCTGATATTAGCACATACAATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGCCTATTT CGATTGTTGCATAGTAAAGGTTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAAGAAGCT TTATGTAAGGTGCTTAGAAATATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGGTGCTCC TTGCAGCATGCTCCAATGAAGATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGGATATCAAAACTGTT ATGACACCAGTATAA
CDS sequence (LotjaGi5g1v0345900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTATCTTCAAAAGGGTGTAGATACTGAGAGCATTTGGGGTTCCCTGGACATGCTTCAAGCATCTCTTGAAATATG GGATGACATTTTAACTGTGTCTGTTCAACTTCGGATGAGGAAACAGTGGGATTCAATCATTTCGATATGCAGATGGATAC TTCTAAGAAGCTCCTTCAAGCAAGATGTTATATGCTATAATTTACTGATAGATGCTTTTGGGCAAAAGTTTCTATACAAG GAGGCAGAATCCACATATCTTCAGCTTCTTGAGGCTAGATGCATTCCTAATGAAGATACTTATGCCCTTCTTATAAAGGC CTACTGCTTGTCCGGGCTGCTTGAAAAAGCTGAAGCTGTCTTTGTTGAAATGAAAAATTATGGCCTTCCTTCAAGTGCAG TTGTATACAACTCTTACATAAATGGATTAATGAAAGGAGGAAATCCAAACAAAGCAGAAGAGATTTTCTTAAGGATGAAG AGGGATGGCTGCAAACCATCTACTGAAACTTATACCATGTTGATAAACTTATATGGGAAGGATGGTAAATCTTTTATGGC CTTAAAAGTGTTCAATGAAATGCTGAGCCATAAGTGCAAACCTAATATTTGCACTTACACTGCTCTGGTGAATGCATTTG CCAGAGAGGGACTATGTGAGAAGGCAGAGGAAGTATTTGAGCAAATGCAAGAAGCTGGGCTTGAACCTGATGTATATTCT TACAATGCCCTCATGGAAGCTTACAGTCGTGCAGGTTTTCCTTATGGGGCTGCAGAAATTTTTTCATTAATGCAGCACAT GGGATGTGAACCAGATAGAGCCTCCTATAATATCTTGGTAGATGCATATGGCAGAGCAGGTTTTCTAAATGATGCCGAAG CTGTATTTGAAGACATGAAAAGAGTGGGAATAACACCAACAATGAAATCCCACATGGTACTTTTATCTGCCTTTTCCAAA ACTGGCAATGTGAGTAAATGTGAGGACATTCTCAACCAAATGTGCAAATCTGGCCTGAAACTAGACACTTTTGTTCTAAA CAGCATGCTGAACTTGTATGGACGGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGATCAT GTGAAGCTGATATTAGCACATACAATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGCCTA TTTCGATTGTTGCATAGTAAAGGTTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAAGAA GCTTTATGTAAGGTGCTTAGAAATATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGGTGC TCCTTGCAGCATGCTCCAATGAAGATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGGATATCAAAACT GTTATGACACCAGTATAA
Protein sequence (LotjaGi5g1v0345900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYLQKGVDTESIWGSLDMLQASLEIWDDILTVSVQLRMRKQWDSIISICRWILLRSSFKQDVICYNLLIDAFGQKFLYK EAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMK RDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYS YNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSK TGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGL FRLLHSKGLKPDVVTWTSRIGAYSKKKLYVRCLEIFEEMIDSGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMDKDIKT VMTPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 21 | 147 | 127 | 6.2E-24 | ||
| SUPERFAMILY | 41 | 270 | 230 | 2.62E-7 | – | |
| PANTHER | 44 | 194 | 151 | 1.0E-93 | – | |
| ProSiteProfiles | 62 | 96 | 35 | 9.087 | ||
| Pfam | 62 | 109 | 48 | 6.5E-8 | ||
| TIGRFAM | 64 | 98 | 35 | 7.7E-4 | ||
| ProSiteProfiles | 97 | 131 | 35 | 11.488 | ||
| TIGRFAM | 100 | 130 | 31 | 2.2E-6 | ||
| ProSiteProfiles | 132 | 166 | 35 | 12.463 | ||
| Pfam | 133 | 176 | 44 | 1.0E-12 | ||
| TIGRFAM | 134 | 167 | 34 | 2.4E-9 | ||
| Gene3D | 148 | 261 | 114 | 2.6E-37 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.235 | ||
| TIGRFAM | 170 | 203 | 34 | 4.0E-9 | ||
| PANTHER | 186 | 301 | 116 | 1.0E-93 | – | |
| Pfam | 201 | 249 | 49 | 4.6E-14 | ||
| ProSiteProfiles | 202 | 236 | 35 | 13.263 | ||
| TIGRFAM | 204 | 238 | 35 | 3.2E-10 | ||
| ProSiteProfiles | 237 | 271 | 35 | 12.156 | ||
| TIGRFAM | 239 | 272 | 34 | 1.1E-7 | ||
| Gene3D | 262 | 333 | 72 | 8.1E-16 | ||
| Pfam | 267 | 300 | 34 | 2.9E-10 | ||
| ProSiteProfiles | 272 | 306 | 35 | 13.11 | ||
| TIGRFAM | 275 | 307 | 33 | 1.1E-8 | ||
| PANTHER | 300 | 474 | 175 | 1.0E-93 | – | |
| ProSiteProfiles | 307 | 341 | 35 | 8.769 | ||
| Pfam | 313 | 339 | 27 | 0.0015 | ||
| TIGRFAM | 313 | 343 | 31 | 1.2E-5 | ||
| Gene3D | 334 | 483 | 150 | 2.9E-34 | ||
| ProSiteProfiles | 342 | 376 | 35 | 8.879 | ||
| TIGRFAM | 345 | 377 | 33 | 9.1E-4 | ||
| Pfam | 346 | 371 | 26 | 0.053 | ||
| ProSiteProfiles | 377 | 411 | 35 | 11.641 | ||
| Pfam | 379 | 409 | 31 | 1.8E-5 | ||
| TIGRFAM | 380 | 413 | 34 | 1.6E-8 | ||
| Pfam | 411 | 459 | 49 | 5.2E-8 | ||
| ProSiteProfiles | 412 | 446 | 35 | 11.17 | ||
| TIGRFAM | 414 | 447 | 34 | 3.6E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0345900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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