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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350100 |
| Transcript ID | LotjaGi5g1v0350100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase subunit beta; TAIR: AT4G38510.5 ATPase, V1 complex, subunit B protein; Swiss-Prot: sp|Q9SZN1|VATB2_ARATH V-type proton ATPase subunit B2; TrEMBL-Plants: tr|I1LF60|I1LF60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66610601..66616770) extracted from Lotus japonicus Gifu genome v1.2.
CCGAGAATGAAAAATACAGTTACCCTTCTCCAAAATCAAATCGAAGTAGAAAGGTGAAATCCGAAAAGATATAATTATTT TAAAAATAAAAGATATAATTAATTCCTGTTGTTGAATTGTTTTGGGTCCATTATTCACATCACATCGTCACACCCACACC CACACCCACGTTTCTCTTGCGCTTCATCATTCAGATCACGGAAAACCACAGGTACTCCTCTATCTCTTCCGATCCATTTT CTCTGATTCGATCTTACTCTCATCATTCAATTCTCCGTTTCTCGATCTCGTTGTTTCGCCGTTTCCCACAAATCTCAGTC CCGCTTTCCCCAGGTTTGAGTAATCAAACTACGTAACTAGCTCATGTTTCGATCACTCACCAACTACAATCACGCTACAC TGCCTTCAATTTTGCATCAAACTACTATTACTATTACTGTTGATTTTGCTGTTTCTGAACCTGTTCCTTAGTTCAGTAGT GATTGGCTCGGATCGACCAATTCTTAAGAACCAATTTGAGAATTCTTAGTTCAGTAGTGGTTTCGGCGTCGACTGTTTTA TTGTTTTTGGTGTTTGCTTTGTGTTAATTATTGATGGAAGCAGAGTGTCTTATTGAACTCTTGCTTCTCATTTGTGATTT TGGTTTGGCATGTATTGACTTTTGTGTGTTTTCCTTTTCTCTGATTGTTTCAAGTTCTAAGATGGGTGTGGCTCAGAAAA TTCCCGATACCGAGGATGGCACTTTGGAGATAGGAATGGGTATGTGTCTTATCTGTTTATCTGAATTGTTCATTTTCTAT GATGATCCGATTCGCTATAGGCGCCTGTATAATGCTCGCTATTATGCATAAAAGAGGCAGTTTGTATGCAAGACTACTGG ATTGATCAATTAACATTGATAACTTAAGTCGTTCGTTCCTTTGTCATTTAGTTTCCCTCTAAATTGTTTTGTTGTTGACT TTGTTCGTTGACATTGCAGAATACCGAACTGTGTCTGGAGTTGCTGGACCGTTGGTCATCCTTGATAAAGTTAAGGTAAT GACAGTCTGCTTGCTGCCTGATATTCATATGGATATTTTGATCTTTTGACTTTGCCAATGACGTTGTCTCTGGATTTCTG CATGGTGTGACTAAATTTTACACTGATGAATTGCATCAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGA TGGAACTACTCGTCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTGAGAGCCTATATAGCACATG CATTGAATCATCTTCTGTATAAATTTGTCTCTTATCTTCGAGTTCATGTCTTTAGGATTTATGTGTTTATTTTGTATGCA TAACCAAAACATTCTAAGCTTCACGAGTAGTATTGTTTGTATAAGATCTTCATTGTTGTCTCTTTCGTCCATGTAGCTGC AGTGACTTTAATAGCAAATAGTTTTGTCACTGTTTAGGTTTAATATTCTGCCAGCGTTGTTAGCAGCATTTTCAAGTTTA TCGACCTTTTTTCCCTACTATTGATCAGGTATTCGAAGGTACATCTGGGATTGACAATAAATTTACGACTGTGCAATTTA CCGGAGAGGTATAAACTCTTGATTATTACTATCCTTTCTATGTTCAAAAGTAAACGTGAAGCAATGCATGCAAATTTCTT GATTTTTACTTCAGTTAATATGCTGTTTGATGACGTCTATCTATATGACTATATCATTGAAATTTTGCTACTTCCGGACC TAAATAATGCACTAATTGTTAGTTTGGGATTTCTATTTTGCTTTGGAAAACACAGAATTCGGCTGACCATTTGCTGGCTT TTAAAATGCTGTCTTCTAAATTATCCATTGAGTAATTAAGAGAAGCCCAATTTAGCTGAGTATTGAGTGTTGAGTATTGA GTTGAAACTAAAGTTCTTCCTTCAATTTATTTGATATGTAACTTTTATTATATGGAACCAATTCGTTCCACCTTTGACTT CCTCCATTCTTCTCTTCTTGTTATATTTACAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTCAAT GGTTCTGGAAAACCAATTGATAACGGTCCACCGATTTTGCCTGAGGCTTACTTGGATATATCAGGTATTTAATTTCTGCA CTTTTCTACTACTGCATGTTTGTTGATGTCGGATTTTCTCCCATAATGTCTTCCCAACAATTCAGGAAGTTCCATCAACC CTAGTGAGAGAACGTATCCTGAGGAGATGATACAGACGGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGT CAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATCGCTGCACAAATATGTCGTCAGGCTGGCCTAGT CAAGCGATTAGAGAAGTCTGATAACCTTCTTGAGGTACAGCAAAGTTGCTAGTGTTCATTTCATCAAATATGTTAAATGC TCTTGAATTTAACTTTTCGCAATCGGTAGAGATTTGTGTTCCATTATGACATTCCTTATTTATGGTTAATGATGATGACA ATGGCGATGTATAGGAAAAGAAATATTATTAAATAGGAAAGGAAAATTACAAAAGAGGATAAAGTATCCTCCAAAATAAA ATATAAGGCTGATGGATGATTAAAGAACTGTTATGAAGAAGCTGAGATAAAAAATTTGAAATTACTTCAATTTTTTTATT GCTTTTAGATATACTGCTTATCATTGCCTTTAGATTAATAAGGCTATTTTCTTATATGAAGGCGATGTTTCTTACAGATA CACTCTTTTTACTGAAATCATTACTTCTATACTTTCTGTATATGAAGGCGATGTTTCTTACAAATCTTGTTTTCTGCAGG GTGGAGAAGATGACAATTTTGCCATTGTGTTTGCGGCTATGGGAGTTAACATGGAGACAGCACAGTTTTTCAAACGTGAC TTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGTAATCTCTAGATATCAGTATGCAAATATTCT TTATTTTCAAATGTGACTTTGAGCATGCAAGTATCTCTGATTTTTTTCATCATTTTCCTTTTAGTAGTTATGCATTTACA GTTTATGAATTAAAGGAAATAATGGTCCTTATATTGATATTGTTTTAGAATACATGCTTGGAATTTGCTATAAATTTAGT TTGTTGTTTTATCATTCATAATGGCCCTTATTAAGATTTTTATTCTCTGGAGACCCAATCTATGCATTACAAAAAAGTAT TACTTTCCGCTCTTCATATGTAAATCTAGCATATTGATTGATGGATATATGTATATATAAGGGGCCATATGTCCATGATT AATGCTTAACTATTTTTTGGCTTGTTAACCTAAACCAAGCACATATGCCAATTTTAGGGGGGGAATAAATTTTCTGGGAT GTACCAGCTGATGATGTTAATTTTAAATGATAATGGAGTATGTTAGTTTTTTGTTATTAAAAGATGGATGGCCTTAATTT TTTTTTAAGTGGATCATAATTGTATTTGAGGAACCCAAGGTGACATAGAGAATAACCTTTTAAAAAATGAAATTCAAATG AAGCATCTACTGTAATTTTGAAAATTTGATTTCTTGACCTGCTCGAAGGAGCTGCTATTAACATGTTTGTTCTCTTGCCA TTGTGGTACACTGCAGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATT TGGCTTATGAGTGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTAATG TTCCTTCAACTGTAATTTCTTAGGGAAACGAATCAACAAAAGAAAAGAAAGAGGAGATAAACCTTGTACTGCCTTTACCA TTCTCCTGGGTTTAATGATAATTAAAAATTGACACTGCTTGGATCTTTTGCTTAATCTTGTAGTATGAAAAGTAACTTAA AATATGTTTAAATATTTCTTGAACATTTTTCATGACACAAGCTATTGATCACTTCTTGGTCCTATAGGTATCTGCTGCCC GTGAAGAAGTGCCAGGAAGACGTGGTTACCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGA ATTGAGGGACGCAAAGGCTCTATTACCCAAATTCCAATTCTAACCATGCCAAATGATGGTAATGAAATATTATAGTTTCT TAGCTAGCTTGTAAAACATTTACGGGGGTGATCATGTTTCTTGAACTTCTTTTGTACAGATATTACACATCCAACTCCTG ACCTGACTGGATATATCACTGAGGGGCAGATATACATTGATAGGCAGCTGCACAATAGACAGGTAGGTTCAGCTGGAATG AATACTATACACCATGTTGAATTAGTTACTGGATTAGTTAGAAGAGAAAATTTGGGGCAGAATGAATCCCGACATTTAAT TTAATGTGATATTGCTTTAAGAATACTAAATCGTTGGCTTGTTATTTAATGGAAGTTAGTACTCTCTCTGGGAAATTTAT TGGTTTCTCCCATCTTTTTAATGCTCTTTCTATCTTTTCTTGGCTCTAACTAAGAGTTGAAATATTCTGATTTTATTTTC ATTGATAAATCAAATCAAAATGATGTATTTATGTCAGTATACAATCAGTCAAGATGACCTGGTAACATTGTTTTTTATTG GGCAGATATACCCACCAATCAACGTCCTTCCCTCACTTTCTCGGTTGATGAAGGTAAGGTCAAACTTGTTTTTTTGATAA TAAATTTGCAGTTCTTAATTAAAAAGTGAGTGGTTCACTCTTTAATGATGCGTCATTGGCCACCTCTGCAGAGTGCCATT GGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGGTATTCTGTTATTTGTTCATCATATACTTGTTTCT TTTATATTTATAAACCTTATCAGCGTTATTTTTTTTCTTTCCAGCTATATGCAAATTATGCCATTGGAAAGGATGTTCAG GCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGGTCTCTGCTAATTTTATTTCTAAGGATATTTT GTTTGTTCTAATGAAATTATCCTTGAAGTAGTACTAATGAAACTTAATATTTTACCTTTTGTTAACAGCTTTATCTGGAA TTTTTGGACAAGTTTGAGAGGAAGTTTGTGGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTTGATCTTGC ATGGACTTTACTTCGTATTTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGAG ATGCTGGTAATTGATGAGCAGGCAAGTTCATATAGCTTGGTCTCAGCGCCTAAAAGCATCAGCCATTAGTTCGCTTCTTA GTTTTCTCGCCCAAAGTTCATACTTCTTCTATCCATCAGAAATATAATAAAGGATTGAGTCTGTATGAGTGCCTTATATT CTGAGTCCGAAATAGAAGAAAACCCCCATAGTTGGCATGATGATTCCTATGCCATTTTGTTTTCTTTTGGTGGAGAAAAT ATTTTGTTAGTTGTGTTTCACACAGTTTGGGATGGTTGGAATTTGTGGAGACTGTCCTCCAGATGTATGTTTGCTTGTTT CACAATCTTATTTATCTTGTAATTTTGTCTTTTAGGTTATTTATAATCAGGATAGTTGTCAGTTGGACACTTCTTGATGT AATTATATGTTTTACTCTATTAATAATTGAAACAAGCTTCTGTAGTCTAGGAGTATTTGAGTTCCATAGAAAAAGGAGTA TCTGATGATGCTTTCTCAGACTATATGTGATGGATCCTATCCACCCCACAGCTTGGGTGTAGGGATGGAATGTCCACATT GTATTCTAGCTTACATTAGGTGTAGGTCCGGTTTATTACCAAATAAATTACTTTTTAAAAAGTTCACTTAGTTAAGAAAA AGTTGGGTTCTAGCCATTTAAGAAGCATTTTAAATCTGAGTGGTTTTTTAAAGTAAATCTCAATAAAATAACAATGTTGT TTTGTTTTCTTATGTTACTAGTTAGTTTCTCATTATAATACTTCAAAAATTATATATGTAATGTATCAATTTAAAGATTA AAGCGTGCAG
CDS sequence (LotjaGi5g1v0350100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGGCTCAGAAAATTCCCGATACCGAGGATGGCACTTTGGAGATAGGAATGGAATACCGAACTGTGTCTGGAGT TGCTGGACCGTTGGTCATCCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAA CTACTCGTCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTCGAAGGTACATCTGGGATTGAC AATAAATTTACGACTGTGCAATTTACCGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTCAA TGGTTCTGGAAAACCAATTGATAACGGTCCACCGATTTTGCCTGAGGCTTACTTGGATATATCAGGAAGTTCCATCAACC CTAGTGAGAGAACGTATCCTGAGGAGATGATACAGACGGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGT CAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATCGCTGCACAAATATGTCGTCAGGCTGGCCTAGT CAAGCGATTAGAGAAGTCTGATAACCTTCTTGAGGGTGGAGAAGATGACAATTTTGCCATTGTGTTTGCGGCTATGGGAG TTAACATGGAGACAGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTTTTCCTTAAT TTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAGTG TGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGTGAAG AAGTGCCAGGAAGACGTGGTTACCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAG GGACGCAAAGGCTCTATTACCCAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGACCTGAC TGGATATATCACTGAGGGGCAGATATACATTGATAGGCAGCTGCACAATAGACAGATATACCCACCAATCAACGTCCTTC CCTCACTTTCTCGGTTGATGAAGAGTGCCATTGGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTA TATGCAAATTATGCCATTGGAAAGGATGTTCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCT GCTTTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTGGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGT CACTTGATCTTGCATGGACTTTACTTCGTATTTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACCAG TTTTACAGCCGAGATGCTGGTAATTGA
Protein sequence (LotjaGi5g1v0350100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVAQKIPDTEDGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGID NKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLN LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIE GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQL YANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQ FYSRDAGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 488 | 488 | 0.0 | – | |
| PANTHER | 1 | 488 | 488 | 0.0 | ||
| PIRSF | 12 | 488 | 477 | 4.0E-242 | ||
| Gene3D | 13 | 486 | 474 | 1.6E-197 | – | |
| Hamap | 18 | 486 | 469 | 55.442 | ||
| CDD | 20 | 91 | 72 | 1.50547E-40 | – | |
| TIGRFAM | 20 | 486 | 467 | 4.6E-289 | ||
| Pfam | 24 | 90 | 67 | 3.3E-13 | ||
| CDD | 92 | 379 | 288 | 0.0 | – | |
| SUPERFAMILY | 94 | 383 | 290 | 2.34E-83 | ||
| Pfam | 147 | 377 | 231 | 9.9E-68 | ||
| ProSitePatterns | 368 | 377 | 10 | - | ||
| CDD | 387 | 481 | 95 | 6.54779E-60 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Proton-transporting V-type ATPase, V1 domain | A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. | ||
| Biological process | ATP metabolic process | The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi5g1v0350100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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