Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350100 |
| Transcript ID | LotjaGi5g1v0350100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase subunit beta; TAIR: AT4G38510.5 ATPase, V1 complex, subunit B protein; Swiss-Prot: sp|Q9SZN1|VATB2_ARATH V-type proton ATPase subunit B2; TrEMBL-Plants: tr|I1LF60|I1LF60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66610741..66616534) extracted from Lotus japonicus Gifu genome v1.2.
CACATCGTCACACCCACACCCACACCCACGTTTCTCTTGCGCTTCATCATTCAGATCACGGAAAACCACAGGTACTCCTC TATCTCTTCCGATCCATTTTCTCTGATTCGATCTTACTCTCATCATTCAATTCTCCGTTTCTCGATCTCGTTGTTTCGCC GTTTCCCACAAATCTCAGTCCCGCTTTCCCCAGGTTTGAGTAATCAAACTACGTAACTAGCTCATGTTTCGATCACTCAC CAACTACAATCACGCTACACTGCCTTCAATTTTGCATCAAACTACTATTACTATTACTGTTGATTTTGCTGTTTCTGAAC CTGTTCCTTAGTTCAGTAGTGATTGGCTCGGATCGACCAATTCTTAAGAACCAATTTGAGAATTCTTAGTTCAGTAGTGG TTTCGGCGTCGACTGTTTTATTGTTTTTGGTGTTTGCTTTGTGTTAATTATTGATGGAAGCAGAGTGTCTTATTGAACTC TTGCTTCTCATTTGTGATTTTGGTTTGGCATGTATTGACTTTTGTGTGTTTTCCTTTTCTCTGATTGTTTCAAGTTCTAA GATGGGTGTGGCTCAGAAAATTCCCGATACCGAGGATGGCACTTTGGAGATAGGAATGGGTATGTGTCTTATCTGTTTAT CTGAATTGTTCATTTTCTATGATGATCCGATTCGCTATAGGCGCCTGTATAATGCTCGCTATTATGCATAAAAGAGGCAG TTTGTATGCAAGACTACTGGATTGATCAATTAACATTGATAACTTAAGTCGTTCGTTCCTTTGTCATTTAGTTTCCCTCT AAATTGTTTTGTTGTTGACTTTGTTCGTTGACATTGCAGAATACCGAACTGTGTCTGGAGTTGCTGGACCGTTGGTCATC CTTGATAAAGTTAAGGTAATGACAGTCTGCTTGCTGCCTGATATTCATATGGATATTTTGATCTTTTGACTTTGCCAATG ACGTTGTCTCTGGATTTCTGCATGGTGTGACTAAATTTTACACTGATGAATTGCATCAGGGACCCAAATTTCAAGAGATT GTTAATATTCGTTTAGGAGATGGAACTACTCGTCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGT GAGAGCCTATATAGCACATGCATTGAATCATCTTCTGTATAAATTTGTCTCTTATCTTCGAGTTCATGTCTTTAGGATTT ATGTGTTTATTTTGTATGCATAACCAAAACATTCTAAGCTTCACGAGTAGTATTGTTTGTATAAGATCTTCATTGTTGTC TCTTTCGTCCATGTAGCTGCAGTGACTTTAATAGCAAATAGTTTTGTCACTGTTTAGGTTTAATATTCTGCCAGCGTTGT TAGCAGCATTTTCAAGTTTATCGACCTTTTTTCCCTACTATTGATCAGGTATTCGAAGGTACATCTGGGATTGACAATAA ATTTACGACTGTGCAATTTACCGGAGAGGTATAAACTCTTGATTATTACTATCCTTTCTATGTTCAAAAGTAAACGTGAA GCAATGCATGCAAATTTCTTGATTTTTACTTCAGTTAATATGCTGTTTGATGACGTCTATCTATATGACTATATCATTGA AATTTTGCTACTTCCGGACCTAAATAATGCACTAATTGTTAGTTTGGGATTTCTATTTTGCTTTGGAAAACACAGAATTC GGCTGACCATTTGCTGGCTTTTAAAATGCTGTCTTCTAAATTATCCATTGAGTAATTAAGAGAAGCCCAATTTAGCTGAG TATTGAGTGTTGAGTATTGAGTTGAAACTAAAGTTCTTCCTTCAATTTATTTGATATGTAACTTTTATTATATGGAACCA ATTCGTTCCACCTTTGACTTCCTCCATTCTTCTCTTCTTGTTATATTTACAGGTGTTAAAAACTCCTGTCTCACTGGACA TGCTTGGACGCATATTCAATGGTTCTGGAAAACCAATTGATAACGGTCCACCGATTTTGCCTGAGGCTTACTTGGATATA TCAGGTATTTAATTTCTGCACTTTTCTACTACTGCATGTTTGTTGATGTCGGATTTTCTCCCATAATGTCTTCCCAACAA TTCAGGAAGTTCCATCAACCCTAGTGAGAGAACGTATCCTGAGGAGATGATACAGACGGGAATATCTACAATTGATGTCA TGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATCGCTGCACAAATA TGTCGTCAGGCTGGCCTAGTCAAGCGATTAGAGAAGTCTGATAACCTTCTTGAGGTACAGCAAAGTTGCTAGTGTTCATT TCATCAAATATGTTAAATGCTCTTGAATTTAACTTTTCGCAATCGGTAGAGATTTGTGTTCCATTATGACATTCCTTATT TATGGTTAATGATGATGACAATGGCGATGTATAGGAAAAGAAATATTATTAAATAGGAAAGGAAAATTACAAAAGAGGAT AAAGTATCCTCCAAAATAAAATATAAGGCTGATGGATGATTAAAGAACTGTTATGAAGAAGCTGAGATAAAAAATTTGAA ATTACTTCAATTTTTTTATTGCTTTTAGATATACTGCTTATCATTGCCTTTAGATTAATAAGGCTATTTTCTTATATGAA GGCGATGTTTCTTACAGATACACTCTTTTTACTGAAATCATTACTTCTATACTTTCTGTATATGAAGGCGATGTTTCTTA CAAATCTTGTTTTCTGCAGGGTGGAGAAGATGACAATTTTGCCATTGTGTTTGCGGCTATGGGAGTTAACATGGAGACAG CACAGTTTTTCAAACGTGACTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGTAATCTCTAGA TATCAGTATGCAAATATTCTTTATTTTCAAATGTGACTTTGAGCATGCAAGTATCTCTGATTTTTTTCATCATTTTCCTT TTAGTAGTTATGCATTTACAGTTTATGAATTAAAGGAAATAATGGTCCTTATATTGATATTGTTTTAGAATACATGCTTG GAATTTGCTATAAATTTAGTTTGTTGTTTTATCATTCATAATGGCCCTTATTAAGATTTTTATTCTCTGGAGACCCAATC TATGCATTACAAAAAAGTATTACTTTCCGCTCTTCATATGTAAATCTAGCATATTGATTGATGGATATATGTATATATAA GGGGCCATATGTCCATGATTAATGCTTAACTATTTTTTGGCTTGTTAACCTAAACCAAGCACATATGCCAATTTTAGGGG GGGAATAAATTTTCTGGGATGTACCAGCTGATGATGTTAATTTTAAATGATAATGGAGTATGTTAGTTTTTTGTTATTAA AAGATGGATGGCCTTAATTTTTTTTTAAGTGGATCATAATTGTATTTGAGGAACCCAAGGTGACATAGAGAATAACCTTT TAAAAAATGAAATTCAAATGAAGCATCTACTGTAATTTTGAAAATTTGATTTCTTGACCTGCTCGAAGGAGCTGCTATTA ACATGTTTGTTCTCTTGCCATTGTGGTACACTGCAGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGC TCTTACTACTGCTGAATATTTGGCTTATGAGTGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTG ATGCTCTTCGTGAGGTAATGTTCCTTCAACTGTAATTTCTTAGGGAAACGAATCAACAAAAGAAAAGAAAGAGGAGATAA ACCTTGTACTGCCTTTACCATTCTCCTGGGTTTAATGATAATTAAAAATTGACACTGCTTGGATCTTTTGCTTAATCTTG TAGTATGAAAAGTAACTTAAAATATGTTTAAATATTTCTTGAACATTTTTCATGACACAAGCTATTGATCACTTCTTGGT CCTATAGGTATCTGCTGCCCGTGAAGAAGTGCCAGGAAGACGTGGTTACCCTGGTTATATGTATACAGATCTTGCAACAA TTTATGAACGTGCTGGAAGAATTGAGGGACGCAAAGGCTCTATTACCCAAATTCCAATTCTAACCATGCCAAATGATGGT AATGAAATATTATAGTTTCTTAGCTAGCTTGTAAAACATTTACGGGGGTGATCATGTTTCTTGAACTTCTTTTGTACAGA TATTACACATCCAACTCCTGACCTGACTGGATATATCACTGAGGGGCAGATATACATTGATAGGCAGCTGCACAATAGAC AGGTAGGTTCAGCTGGAATGAATACTATACACCATGTTGAATTAGTTACTGGATTAGTTAGAAGAGAAAATTTGGGGCAG AATGAATCCCGACATTTAATTTAATGTGATATTGCTTTAAGAATACTAAATCGTTGGCTTGTTATTTAATGGAAGTTAGT ACTCTCTCTGGGAAATTTATTGGTTTCTCCCATCTTTTTAATGCTCTTTCTATCTTTTCTTGGCTCTAACTAAGAGTTGA AATATTCTGATTTTATTTTCATTGATAAATCAAATCAAAATGATGTATTTATGTCAGTATACAATCAGTCAAGATGACCT GGTAACATTGTTTTTTATTGGGCAGATATACCCACCAATCAACGTCCTTCCCTCACTTTCTCGGTTGATGAAGGTAAGGT CAAACTTGTTTTTTTGATAATAAATTTGCAGTTCTTAATTAAAAAGTGAGTGGTTCACTCTTTAATGATGCGTCATTGGC CACCTCTGCAGAGTGCCATTGGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGGTATTCTGTTATTTG TTCATCATATACTTGTTTCTTTTATATTTATAAACCTTATCAGCGTTATTTTTTTTCTTTCCAGCTATATGCAAATTATG CCATTGGAAAGGATGTTCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGGTCTCTGCTAAT TTTATTTCTAAGGATATTTTGTTTGTTCTAATGAAATTATCCTTGAAGTAGTACTAATGAAACTTAATATTTTACCTTTT GTTAACAGCTTTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTGGCCCAGGGAGCTTATGACACCCGCAATATA TTCCAGTCACTTGATCTTGCATGGACTTTACTTCGTATTTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCT TGACCAGTTTTACAGCCGAGATGCTGGTAATTGATGAGCAGGCAAGTTCATATAGCTTGGTCTCAGCGCCTAAAAGCATC AGCCATTAGTTCGCTTCTTAGTTTTCTCGCCCAAAGTTCATACTTCTTCTATCCATCAGAAATATAATAAAGGATTGAGT CTGTATGAGTGCCTTATATTCTGAGTCCGAAATAGAAGAAAACCCCCATAGTTGGCATGATGATTCCTATGCCATTTTGT TTTCTTTTGGTGGAGAAAATATTTTGTTAGTTGTGTTTCACACAGTTTGGGATGGTTGGAATTTGTGGAGACTGTCCTCC AGATGTATGTTTGCTTGTTTCACAATCTTATTTATCTTGTAATTTTGTCTTTTAGGTTATTTATAATCAGGATAGTTGTC AGTTGGACACTTCTTGATGTAATTATATGTTTTACTCTATTAATAATTGAAACAAGCTTCTGTAGTCTAGGAGTATTTGA GTTCCATAGAAAAAGGAGTATCTGATGATGCTTTCTCAGACTATATGTGATGGATCCTATCCACCCCACAGCTTGGGTGT AGGGATGGAATGTCCACATTGTATTCTAGCTTAC
CDS sequence (LotjaGi5g1v0350100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGGCTCAGAAAATTCCCGATACCGAGGATGGCACTTTGGAGATAGGAATGGAATACCGAACTGTGTCTGGAGT TGCTGGACCGTTGGTCATCCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAA CTACTCGTCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTCGAAGGTACATCTGGGATTGAC AATAAATTTACGACTGTGCAATTTACCGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTCAA TGGTTCTGGAAAACCAATTGATAACGGTCCACCGATTTTGCCTGAGGCTTACTTGGATATATCAGGAAGTTCCATCAACC CTAGTGAGAGAACGTATCCTGAGGAGATGATACAGACGGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGT CAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATCGCTGCACAAATATGTCGTCAGGCTGGCCTAGT CAAGCGATTAGAGAAGTCTGATAACCTTCTTGAGGGTGGAGAAGATGACAATTTTGCCATTGTGTTTGCGGCTATGGGAG TTAACATGGAGACAGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTTTTCCTTAAT TTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAGTG TGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGTGAAG AAGTGCCAGGAAGACGTGGTTACCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAG GGACGCAAAGGCTCTATTACCCAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGACCTGAC TGGATATATCACTGAGGGGCAGATATACATTGATAGGCAGCTGCACAATAGACAGATATACCCACCAATCAACGTCCTTC CCTCACTTTCTCGGTTGATGAAGAGTGCCATTGGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTA TATGCAAATTATGCCATTGGAAAGGATGTTCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCT GCTTTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTGGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGT CACTTGATCTTGCATGGACTTTACTTCGTATTTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACCAG TTTTACAGCCGAGATGCTGGTAATTGA
Protein sequence (LotjaGi5g1v0350100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVAQKIPDTEDGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGID NKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLN LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIE GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQL YANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQ FYSRDAGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 488 | 488 | 0.0 | – | |
| PANTHER | 1 | 488 | 488 | 0.0 | ||
| PIRSF | 12 | 488 | 477 | 4.0E-242 | ||
| Gene3D | 13 | 486 | 474 | 1.6E-197 | – | |
| Hamap | 18 | 486 | 469 | 55.442 | ||
| CDD | 20 | 91 | 72 | 1.50547E-40 | – | |
| TIGRFAM | 20 | 486 | 467 | 4.6E-289 | ||
| Pfam | 24 | 90 | 67 | 3.3E-13 | ||
| CDD | 92 | 379 | 288 | 0.0 | – | |
| SUPERFAMILY | 94 | 383 | 290 | 2.34E-83 | ||
| Pfam | 147 | 377 | 231 | 9.9E-68 | ||
| ProSitePatterns | 368 | 377 | 10 | - | ||
| CDD | 387 | 481 | 95 | 6.54779E-60 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Proton-transporting V-type ATPase, V1 domain | A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. | ||
| Biological process | ATP metabolic process | The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi5g1v0350100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…