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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0352400 |
| Transcript ID | LotjaGi5g1v0352400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G08310.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P0C8Q6|PP368_ARATH Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial; TrEMBL-Plants: tr|K7N2R1|K7N2R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0352400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66824112..66828507) extracted from Lotus japonicus Gifu genome v1.2.
GTCGTGGTTCACATTAATAAAGGTTGATGATTAAGATTTAAGAGGGTTTATAGGTGTTTATCTAAGGCAAGAAAAGTGTT TTTAGTTGGAATGATGACACTTAAGAAAAGAAGGTATTGAAGCTTCTATGGACTAATGGAGTATTGAGTCTTCTCATCGT CGGAATAGATCAACTTTCATCTTCGTAAAGTATTTAGTTTCAAATCCGTAAAAGCAGAGGAAGGAAGCATGGTCGTATGG TAGTAGAGTTGCTTCCATCAATGGCTTCGTCATTGAAACTCAAACTCTTCAAATGCTCATTTTCTTCTTCTTCCTCTGCT TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGGCAGATACCCTCATCTCCATCTTCACCACCAAAGGACCCACCGC GCCGGAACTCAACCAAATCGCCCCCACACTCACCCCTCCCCTCGTTGAGTCCGTCCTCAAACGCCTCCGCAGCTGGAAGC TCGCTCATTCCTTCTTCAACTGGGCTTCCGCCCAACACCAACATGGCTATCGCCACTCCTGCTACACCATCAATGCCATC GCCACCATCTTCTCCCGTTCCCGCAAACCCGCTCCTCTCAGATCCCTCGCCAAACACGTCCTCTCCAACCCCTCTTGCTC CTTCACCCCTGGCGCTCTTGGTTTCTTCATCCGCTGCCTCGGTTCCCTCGGGTTAGTTCGGGAAGCCAACGAGGTGTTCG ATGAAATGCGCGTGAAGGGTCTCTGTGTTCCCAATGACTACTGCTACAACTGCTTGTTAGAGGTTATATCAAAGTCTGGT TCTATTGATTTGATGGAGATGAGGTTGAATGAAATGAGGGAGGTTGGGTGGGGGTTTGATAAGTACACGCTGACACCGGT GATGCAAGCTTATTGCAATGCTCGCAGGTTTGAACAGGCTTTCGGGGTGTACAAGACAATGCAGGAGAAGGGTTGGGTCG ATGAACGTGTTTGCTCGATGATGGCGTTGTCTTTTACCAAGTGGGGCGAGGTGGATAAGGCGTTTGAGTTGGTGGACAGA ATGGGTGAACGTGGAATGAGACTGAGTGAGAAGACTTTTTGTGTTTTGATTCATGGGTTTGTCAAGGAGTCCCGTCTGGA TAAGGCCCTCCAATTGCTTGATAAAATGCGCGGGGCTGGTTTCACTCCTGACGTTTCCTTGTATGATGTTCTGATTGAAG GATTGTGCAGGAACAAGGACACGGACAAAGCTTTGAGCTTGCTTCGGGAAATGAAGGAATTTGGCGTTGAGCCGGATGTT GGAATATTTACAAAATTGATATCATCTGTCTCGGATAGAAGCGTGCTTGCACAATTACTGGAAGAAGTTCCGGAGGAAGA AGATGATAAAACTCTTGTTTTGATTTACAATGCTGTTTTGACTGGTTATGTGAGTGATGGGTTAATGGATGAAGCTTGTC ACCTACTTCAGAGGATGATTAAATGCAAATCTAGTTCTGATGCTCAGATGGATACTTTCCTCAGGGTCAAGAGATTGGTT TTTCCCAATACCACTTCCTTTAGCATTGTAATTGATGGCTTACTAAAAAATGGACAGTTGGACCTTGCCCTGAGCCTCTT CAATGATATGCAACAATCTGTTGGTAAACCAAATGTTTTGATTTACAACAATCTGATCAATGGGCTCTGCAATTCCAATA GATTGGAGGAGAGTCGTGAGCTCTTGAGAGAGATGAAAGAATCAGGAATTGAACCAACTCATTTCACTTACAACTCAATA TATGGATGCCTGTGTAAAAGAAAGGATGTTGTAGGAGCCAGTGATATGTTAAAGGAAATCCGTGTTTGCGGGCATGAGCC GTGGATAAAACATTCCACCCTTCTTGTGAAAGAGCTATGTGATCATGGGAGGGCTGTAGAAGCATGTAACTTTCTTGACA CCATGGTTCAACAGGGTTTCCTTCCTGATATAGTTTCCTATTCTGCAGCAATCAGTGGCTTGATCAAGATTCAGAAAATG GATCAAGCATTGGACGTGTTCAAGAATTTGTGTTCTCTTGGTCGCTGTCCTGATGTGGTTGCTTTTAACGTATTGATAGG AGGGCTCTGCAAAGCCGACAGATTCACAGAGGCTGAAAACTTACTGGATGAGATGGTTGGAAGGGGTCTTTCTCCCTCAG TTGTTACCTACAATTTGCTTATAGATGCCTTGTGCAAAAACGGTAATATTGAGAAGACTATGGCACTTCTTTCCAGAATG TCTGGAGAAGACAGGGAGCCCAATGTCATCACATACACAACTCTGGTGGACGGGTTATGCAGAGCGGAAAAACCTGATGA TGCTCTCTTGGTCTGGGATGAGATGGGAAAAAGGGGTTGCCATCCAAATCGAATTGCTTTCATGGCACTTATTTATGGTC TTTGCAAATGCTACAGGCCAACTGAAGCCCTCTGTTACCTACGTGAAATGGAACAGAAAGAAATGAAACCGGACTCTTTC ATTTATATTGCATTGCTAAATGCTTTTCTGTCTGATCTAAATTTGACCTCTGCATTTGAGATTTTCAAGGAGATGGTTGA TTTGGGATTTTTTCCAGAATCGTATGATAAAAATTACTCTATTGCAATAGATGCAATACTCAAGTTTTCTAGGGATCAAA GAACATCCTCAGATATCCAAGTTCTAATGGAAGAGAGGAAAATTCCTAGAGTGCCTACTTGAACTGTTTGAAGTGAGAGG TTAGTCAAATGGAGTCAATCATTTTTGTCAATTGCCGAAGGAAATAAATGTTACACATCAGATTGATAGGACGAGGACAC AAACATGCACATAAAAGAAAAACACATTAGTTACTTCACTCCTGTGATAATATGCCTAAGAGAATGTGACTCTGGAATTT ATCAAGATATATATTACTTGTGAAGTTGGTAGTTGGAAAAAGTAATCATAGGAAAATGAGGAAATCATATTTGCAACTAA TATGTCTGCAGAAAGGCCATGTTTTCAAGGATGCCATGGACCAAATCGACCAGACCTTTTCTGCTGTTTCCGTTCTTTAT GATGAGAAGATAAAAAACCAAACTATTCCTAAAGACCTTGTGATTGGTACCTTGGTTAGATTTGAACAACTCAAAAGGTG GAACCTTGTCATTGAGGTATATATACAACTCTATACACCATTCTTTGTTTTATGTTTGACTTCAGATGTTGTATAATTAT TTGGTTTTAATTCTTAAATGATTCTAATTATTTGCCTGCTTCCACATTCTTTTTTCCCTGAAAGTTGGACATACCTTTAA CATCATTTTATTTTATTATTTCCAAAAGAAGAAATAACTGGTTTTAATCTGACTTATATAAAACTAGACCATCTAGTTTT ACTCTACATTAATAGCAACAGGTTTGGATCTCTGGAGGATTTCTGTGAACTAGATGGTCTCGTTATATAAGATTGCCAGT AATTCATAAGTACATACTCTGTTTTCAACTGTTTTGGAATGCAAAATTTCTTCAGTTTCCTGGATCTGAAAGAGAGTGCC GGGTTCTCCTAATAACTAAAAAGTGTATCATACCTGAATCTAACTCGAGATTTTGTCTCAATTCATATTTAGCCCGAGCA ATCGGTATTTGTGATCTCGTCTATTTTGCTTCTCCCACAAATCTTACTGAGTTCCTCCCTATCTTTACCAACCACACTAA TATCTTCAGTGCCTATATATACAAATATTTTAATGCATGAAAAGGGATAGGTAAATTATGTTTCCTTTCTACAGTAGTTT CTATATTTTAATGTTGGAAGCATTCTGGTATTGTTTATTAGTGCACAACATTGAATCATTGTACTTTTTTCCGTGACTGC AGATACATGCCAGATCTTTGCTCATAAACTACCAAGTTATCAGCTTATGTCAATGCACCTGACATGGAGGGTGCTGAGAA GTTTTTCAAAAGATTGATACAAGATGGTTTTAGAGCTTAATGTGGTTACTTATGGAACCTTAATTAAAGGCTATGCTAAG ATAAATGATCTTGAGAAGGTGCTGGAGAAGTATGAGGAAATGCTTGGGCGTGGTATCAAGGAAATAGAGTCCACCGGTGA TCACGAAGCCAAAAACACCCTATCTTTAGACAAAGCAAGATGTAGAGAAAGAAAAGAAGCTAATGAGCTTGTGGGGCATT TCAATGAAAATAACAATTTAATTAAAGTTAATCGCGCTGCTAGATTTGATGATGATGATGAAAAGATAATTATGAATATT TTGATCCCCAATTAGTCGGTCCGACACTACAAGTTTTGTACACTTGCAAGTTTAGGCTTTGTATTTTGTTGTACACTACA TATTAGCTCCCAATTGAAATTATAATAATTTTTTAAATAATGTAAAAAATAAAATAATTTACCAAAACAAATACAG
CDS sequence (LotjaGi5g1v0352400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGTAGAGTTGCTTCCATCAATGGCTTCGTCATTGAAACTCAAACTCTTCAAATGCTCATTTTCTTCTTCTTCCTC TGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGGCAGATACCCTCATCTCCATCTTCACCACCAAAGGACCCA CCGCGCCGGAACTCAACCAAATCGCCCCCACACTCACCCCTCCCCTCGTTGAGTCCGTCCTCAAACGCCTCCGCAGCTGG AAGCTCGCTCATTCCTTCTTCAACTGGGCTTCCGCCCAACACCAACATGGCTATCGCCACTCCTGCTACACCATCAATGC CATCGCCACCATCTTCTCCCGTTCCCGCAAACCCGCTCCTCTCAGATCCCTCGCCAAACACGTCCTCTCCAACCCCTCTT GCTCCTTCACCCCTGGCGCTCTTGGTTTCTTCATCCGCTGCCTCGGTTCCCTCGGGTTAGTTCGGGAAGCCAACGAGGTG TTCGATGAAATGCGCGTGAAGGGTCTCTGTGTTCCCAATGACTACTGCTACAACTGCTTGTTAGAGGTTATATCAAAGTC TGGTTCTATTGATTTGATGGAGATGAGGTTGAATGAAATGAGGGAGGTTGGGTGGGGGTTTGATAAGTACACGCTGACAC CGGTGATGCAAGCTTATTGCAATGCTCGCAGGTTTGAACAGGCTTTCGGGGTGTACAAGACAATGCAGGAGAAGGGTTGG GTCGATGAACGTGTTTGCTCGATGATGGCGTTGTCTTTTACCAAGTGGGGCGAGGTGGATAAGGCGTTTGAGTTGGTGGA CAGAATGGGTGAACGTGGAATGAGACTGAGTGAGAAGACTTTTTGTGTTTTGATTCATGGGTTTGTCAAGGAGTCCCGTC TGGATAAGGCCCTCCAATTGCTTGATAAAATGCGCGGGGCTGGTTTCACTCCTGACGTTTCCTTGTATGATGTTCTGATT GAAGGATTGTGCAGGAACAAGGACACGGACAAAGCTTTGAGCTTGCTTCGGGAAATGAAGGAATTTGGCGTTGAGCCGGA TGTTGGAATATTTACAAAATTGATATCATCTGTCTCGGATAGAAGCGTGCTTGCACAATTACTGGAAGAAGTTCCGGAGG AAGAAGATGATAAAACTCTTGTTTTGATTTACAATGCTGTTTTGACTGGTTATGTGAGTGATGGGTTAATGGATGAAGCT TGTCACCTACTTCAGAGGATGATTAAATGCAAATCTAGTTCTGATGCTCAGATGGATACTTTCCTCAGGGTCAAGAGATT GGTTTTTCCCAATACCACTTCCTTTAGCATTGTAATTGATGGCTTACTAAAAAATGGACAGTTGGACCTTGCCCTGAGCC TCTTCAATGATATGCAACAATCTGTTGGTAAACCAAATGTTTTGATTTACAACAATCTGATCAATGGGCTCTGCAATTCC AATAGATTGGAGGAGAGTCGTGAGCTCTTGAGAGAGATGAAAGAATCAGGAATTGAACCAACTCATTTCACTTACAACTC AATATATGGATGCCTGTGTAAAAGAAAGGATGTTGTAGGAGCCAGTGATATGTTAAAGGAAATCCGTGTTTGCGGGCATG AGCCGTGGATAAAACATTCCACCCTTCTTGTGAAAGAGCTATGTGATCATGGGAGGGCTGTAGAAGCATGTAACTTTCTT GACACCATGGTTCAACAGGGTTTCCTTCCTGATATAGTTTCCTATTCTGCAGCAATCAGTGGCTTGATCAAGATTCAGAA AATGGATCAAGCATTGGACGTGTTCAAGAATTTGTGTTCTCTTGGTCGCTGTCCTGATGTGGTTGCTTTTAACGTATTGA TAGGAGGGCTCTGCAAAGCCGACAGATTCACAGAGGCTGAAAACTTACTGGATGAGATGGTTGGAAGGGGTCTTTCTCCC TCAGTTGTTACCTACAATTTGCTTATAGATGCCTTGTGCAAAAACGGTAATATTGAGAAGACTATGGCACTTCTTTCCAG AATGTCTGGAGAAGACAGGGAGCCCAATGTCATCACATACACAACTCTGGTGGACGGGTTATGCAGAGCGGAAAAACCTG ATGATGCTCTCTTGGTCTGGGATGAGATGGGAAAAAGGGGTTGCCATCCAAATCGAATTGCTTTCATGGCACTTATTTAT GGTCTTTGCAAATGCTACAGGCCAACTGAAGCCCTCTGTTACCTACGTGAAATGGAACAGAAAGAAATGAAACCGGACTC TTTCATTTATATTGCATTGCTAAATGCTTTTCTGTCTGATCTAAATTTGACCTCTGCATTTGAGATTTTCAAGGAGATGG TTGATTTGGGATTTTTTCCAGAATCGTATGATAAAAATTACTCTATTGCAATAGATGCAATACTCAAGTTTTCTAGGGAT CAAAGAACATCCTCAGATATCCAAGTTCTAATGGAAGAGAGGAAAATTCCTAGAGTGCCTACTTGA
Protein sequence (LotjaGi5g1v0352400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVELLPSMASSLKLKLFKCSFSSSSSASSSSSSSSSSSLADTLISIFTTKGPTAPELNQIAPTLTPPLVESVLKRLRSW KLAHSFFNWASAQHQHGYRHSCYTINAIATIFSRSRKPAPLRSLAKHVLSNPSCSFTPGALGFFIRCLGSLGLVREANEV FDEMRVKGLCVPNDYCYNCLLEVISKSGSIDLMEMRLNEMREVGWGFDKYTLTPVMQAYCNARRFEQAFGVYKTMQEKGW VDERVCSMMALSFTKWGEVDKAFELVDRMGERGMRLSEKTFCVLIHGFVKESRLDKALQLLDKMRGAGFTPDVSLYDVLI EGLCRNKDTDKALSLLREMKEFGVEPDVGIFTKLISSVSDRSVLAQLLEEVPEEEDDKTLVLIYNAVLTGYVSDGLMDEA CHLLQRMIKCKSSSDAQMDTFLRVKRLVFPNTTSFSIVIDGLLKNGQLDLALSLFNDMQQSVGKPNVLIYNNLINGLCNS NRLEESRELLREMKESGIEPTHFTYNSIYGCLCKRKDVVGASDMLKEIRVCGHEPWIKHSTLLVKELCDHGRAVEACNFL DTMVQQGFLPDIVSYSAAISGLIKIQKMDQALDVFKNLCSLGRCPDVVAFNVLIGGLCKADRFTEAENLLDEMVGRGLSP SVVTYNLLIDALCKNGNIEKTMALLSRMSGEDREPNVITYTTLVDGLCRAEKPDDALLVWDEMGKRGCHPNRIAFMALIY GLCKCYRPTEALCYLREMEQKEMKPDSFIYIALLNAFLSDLNLTSAFEIFKEMVDLGFFPESYDKNYSIAIDAILKFSRD QRTSSDIQVLMEERKIPRVPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 41 | 41 | - | – | |
| Gene3D | 72 | 253 | 182 | 6.6E-22 | ||
| ProSiteProfiles | 137 | 171 | 35 | 8.122 | ||
| TIGRFAM | 144 | 173 | 30 | 2.9E-4 | ||
| PANTHER | 145 | 360 | 216 | 7.6E-155 | – | |
| Pfam | 145 | 169 | 25 | 0.0016 | ||
| PANTHER | 145 | 360 | 216 | 7.6E-155 | – | |
| ProSiteProfiles | 173 | 207 | 35 | 7.673 | ||
| ProSiteProfiles | 208 | 242 | 35 | 10.26 | ||
| TIGRFAM | 210 | 241 | 32 | 8.7E-6 | ||
| Pfam | 211 | 239 | 29 | 0.0024 | ||
| ProSiteProfiles | 243 | 276 | 34 | 6.27 | ||
| TIGRFAM | 245 | 277 | 33 | 0.0011 | ||
| Pfam | 247 | 273 | 27 | 0.05 | ||
| Gene3D | 254 | 361 | 108 | 9.9E-28 | ||
| ProSiteProfiles | 277 | 311 | 35 | 11.674 | ||
| TIGRFAM | 280 | 313 | 34 | 3.0E-8 | ||
| Pfam | 280 | 309 | 30 | 3.6E-5 | ||
| Pfam | 311 | 355 | 45 | 6.6E-9 | ||
| ProSiteProfiles | 312 | 346 | 35 | 13.351 | ||
| TIGRFAM | 315 | 348 | 34 | 6.3E-10 | ||
| Gene3D | 362 | 463 | 102 | 5.1E-16 | ||
| ProSiteProfiles | 380 | 414 | 35 | 8.396 | ||
| Pfam | 383 | 410 | 28 | 7.7E-5 | ||
| TIGRFAM | 383 | 414 | 32 | 4.1E-5 | ||
| PANTHER | 425 | 517 | 93 | 7.6E-155 | – | |
| PANTHER | 425 | 517 | 93 | 7.6E-155 | – | |
| Pfam | 428 | 459 | 32 | 2.3E-5 | ||
| ProSiteProfiles | 431 | 465 | 35 | 10.391 | ||
| TIGRFAM | 434 | 466 | 33 | 2.3E-6 | ||
| Gene3D | 464 | 531 | 68 | 1.0E-16 | ||
| Pfam | 465 | 514 | 50 | 2.4E-14 | ||
| ProSiteProfiles | 466 | 500 | 35 | 13.702 | ||
| TIGRFAM | 469 | 501 | 33 | 6.5E-9 | ||
| ProSiteProfiles | 501 | 535 | 35 | 9.065 | ||
| TIGRFAM | 503 | 536 | 34 | 2.2E-5 | ||
| PANTHER | 521 | 768 | 248 | 7.6E-155 | – | |
| PANTHER | 521 | 768 | 248 | 7.6E-155 | – | |
| Gene3D | 532 | 598 | 67 | 1.7E-10 | ||
| ProSiteProfiles | 536 | 570 | 35 | 7.509 | ||
| ProSiteProfiles | 571 | 605 | 35 | 9.602 | ||
| Pfam | 573 | 602 | 30 | 0.19 | ||
| TIGRFAM | 573 | 607 | 35 | 8.2E-4 | ||
| Gene3D | 599 | 668 | 70 | 3.3E-21 | ||
| Pfam | 605 | 654 | 50 | 4.0E-17 | ||
| ProSiteProfiles | 606 | 640 | 35 | 12.989 | ||
| TIGRFAM | 608 | 642 | 35 | 2.4E-8 | ||
| ProSiteProfiles | 641 | 675 | 35 | 11.707 | ||
| TIGRFAM | 643 | 677 | 35 | 7.4E-8 | ||
| Gene3D | 669 | 815 | 147 | 2.1E-28 | ||
| Pfam | 675 | 724 | 50 | 3.5E-14 | ||
| ProSiteProfiles | 676 | 710 | 35 | 13.384 | ||
| TIGRFAM | 678 | 711 | 34 | 3.4E-10 | ||
| ProSiteProfiles | 711 | 745 | 35 | 9.81 | ||
| TIGRFAM | 715 | 747 | 33 | 1.2E-4 | ||
| Pfam | 735 | 774 | 40 | 1.5E-4 | ||
| ProSiteProfiles | 746 | 780 | 35 | 9.756 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0352400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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