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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0356200 |
| Transcript ID | LotjaGi5g1v0356200.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 2-oxoglutarate dehydrogenase E1 component family protein; TAIR: AT5G65750.1 2-oxoglutarate dehydrogenase, E1 component; Swiss-Prot: sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A072W2L0|A0A072W2L0_MEDTR E1 subunit-like 2-oxoglutarate dehydrogenase; Found in the gene: LotjaGi5g1v0356200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67121460..67125625) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATGGTTTAGAGCTGCTGCTTTAAGCATAGCAAAGCATGCAATTAGGAGAAATCTCTTTAGAGGTGGATCATCATA TTATGTGACAAGGACCACAAACCTTCCATCAACTAGTAGAAAGCTTCACACAACAATTTTCAAATCAGAAGCTCATGCTG CCCCGGTGCCTCGCCCTGTACCCCTTTCTAGGTTAACTGACAATTTCTTAGATGGGACTAGTAGTGCCTATTTAGAGGAG CTTCAAAGAGCTTGGGAAGCTGATCCGAGCAGTGTCGACGAGTCTTGGGACAATTTCTTCAGGAACTTTGTGGGTCAGGC TTCCACCTCCCCAGGAATTTCTGGTCAGACAATTCAGGAGAGTATGAGATTGCTGTTACTAGTGAGAGCATATCAGGTTA ATGGCCACATGAAAGCTAAGCTTGATCCTTTGGGTCTGAAAGAACGAAATATCCCTGATGAGTTAGATCCTGGCCTTTAT GGTTTCACTGAGGCTGATCTTGACAGGGAATTCTTTTTAGGGGTGTGGAATATGTCTGGATTTTTGTCCGAGAATCGTCC AGTGCAGACTCTTAGGTCCATTTTGACACGGCTTGAGCAAGCTTACTGTGGAAGCATTGGGTACGAGTATATGCATATAC CGGATCGGGACAAATGTAATTGGCTTAGGGACAAGATTGAAACACCTTCACCTACACAATTTAGCCGGGAGCGCCGCGAG GTTATTTTTGATAGGCTTGCTTGGAGTACACTCTTTGAGAACTTCTTGGCCACCAAGTGGACATCAGCAAAGAGGTTTGG GCTTGAAGGTGGAGAGACTCTTATTCCTGGAATGAAAGAAATGTTTGATCGAGCATCTGATCTTGGGGTTGAGAACATAG TTATGGGAATGGCACATAGGGGAAGATTGAATGTTTTAGGCAATGTAGTTCGAAAGCCACTTCGTCAGATTTTTTGTGAG TTTAGTGGTGGTCTACCTCAGGATGAAGTTGGGCTCTATACAGGAACTGGTGATGTTAAATATCACTTGGGAACATCTTA TGATCGCCCAACGAGGGGCGGGAGGAGGATACATCTATCTTTGATGGCAAATCCTAGTCACTTGGAAGCAGTCAACCCAC TTGTTGTTGGAAAAACTCGAGCGAAGCAGTACTACTCGAATGATGCGGAAAGGATGAAAAACATGGGTGTTTTGATTCAT GGAGATGGTAGTTTTGCTGGACAAGGTGTGGTCTATGAAACCCTTCATCTTAGTGCTCTTCCAAATTATACTACTGGTGG GACTATACACATTGTGTTCAACAATCAAGTTGCATTTACTACTGATCCTGAGTCAGGAAGATCATCACAATATTCCACTG ATGTTGCTAAAGCCTTAAATGCTCCTATCTTTCATGTCAATGGTGATGATGTGGAATCAGTTGTTCATGTCTGTGAACTT GCTGCCGAATGGCGCCAGACTTTCCATTCAGATGTGGTTGTTGACTTAGTGTGTTACCGTCGATTTGGGCACAATGAGAT TGATGAACCATCTTTCACACAGCCTAAAATGTATAAGGTTAGCCCTTTTGTTTATTATTCTCTTATTCCTTTTATGTGCA TATTGCTTTATGACAAGTTACTCAGATTTCAACTTTCTGGGCTATGTAAAGGTCATTCGAAACCATCCATCAGCTCTTGA GATCTATCAGAAGAAACTTTTGGAATTAGGGGAGTTGACTCAAGAAGACATTGATAAGATACACAAGAAGGTCACATCAA TTCTGAATGATGAATTTTTGGCCAGCAAAGATTACATTCCAAAAAGAAGAGACTGGCTTTCAGCATATTGGTCAGGTTTC AAGTCACCTGAACAGCTTTCACGTATCCGGAACACTGGGTATGATAAGTCAATGTTAATGTTGCTTGAGTCTTTTTTGTT ATAACAGCTGAATTCTATGATCTATCCTGTGCAGTGTGAAACCAGATATCTTGAAAAATGTTGGGAAAGCAATCACGGCC TTACCTGAAAGTTTGAATCCTCATAGAGCAGTGAAGAAGGTTTATGAACAGCGTGCCCAAATGGTTGAAACTGGGGAAGA TATTGACTGGGGATTTGCGGAGGCACTTGCTTTTGCCACATTGATAGTAGAAGGTAACCATGTTCGATTAAGTGGTCAGG ATGTTGAAAGAGGAACGTTTAGTCACCGCCACGCTGTAGTTCATGATCAGGCAACCGGGGAGAAATATTGCCCCCTTGAC CATGTCATAATGAATCAAAATGAAGAGATGTTTACTGTTAGCAATAGGTATTTTGCACTTCCATGTGTGTATAATGTTCT GAAGAAAACAAATTGGTTTTACATGGTTATTGCTCTAATTCTGTTATACATGTGGCTTCTTAAATTTGAATTCATATCTT GCTCATTTAATCATTGGTATGTGCTTTTTTTTTCAAATACTAGTTTAGTTTTAAGTTATCACATGATTTGTATTGAGCTG TATGTATGAGCTGTTTAAAACTGTGTTTGCCTAATATCTTTGGTGGATTTAATACAATATGCAGCTCGCTTTCTGAGTTT GGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCTAATTCGTTGGTGATATGGGAGGCACAGTTTGGTGACTT TGCTAATGGGGCTCAAGTTATATTTGACAATTTCTTGAGTTCTGGTGAGTCTAAGTGGCTCCGTCAAACTGGGCTTGTAG TGTTACTTCCTCATGGTTATGATGGTCAGGGTCCTGAGCATTCAAGTGGAAGATTGGAACGCTATCTACAGGTTCTCAGT TGTGAATCTGTGTTCTATTTCCTTTCAAACTACTTTAAGCTTTTATTCTTTCTGGTTACTAACATGTTCTGTAAATCATT TGTAGATGGCTGATGATCATCCTTATATTATTCCTGAGATGGATCCAACTCTTCGGAAACAAATTCAGGAGTGTAATTTG CAGATTGTGAATGTTACAACTCCTGCAAATTTCTTCCACGTTTTACGGCGGCAGGTTTGTAGTTGGTCCAGTAATTGATT AATGTTGGCTTTGTTACCTGAAGTTGTGTCTCATTTTTTCGCTGTTTCTTTTTATTTTCTTGCAGATACATAGAGAATTC CGTAAACCTCTCATTGTAATGTCCCCGAAGAACTTGCTTCGCAGTAAGGTTTGCAGATCAAATTTATCTGAGTTTGATGA TGTCCAAGGACACCCTGGTTTTGACAAACAAGGAACCAGATTTAAGCGCCTCATAAAAGACCAAAATGACCACTCAAATG TTGAGGAGGGTATAAGGCGCTTAATACTCTGCTCCGGAAAGGTGCATACACCATATACTCATTGGAACTAGCTATTAATC TTGTGGAGTTTATAATTATATCAACCATATTTGCAATTTTTATCTGGTGCTTCAATTAGATATATATGTATATGTTTTAT GTCCAGGACTTTCACAATTTTCTGAATATGCTTTTTGACTTTGTAACTATTAATATGTTATATGCAGGTTTACTATGAAC TTGATGAGCAAAGAACAAAGGATGATGCAAAGGATGTTGCAATATGTAGGGTGGAACAGCTCTGTCCTTTCCCTTATGAC CTTGTCCAACGAGAGCTTAAAAGATATCCAAGTATGTCTGTTAAAAATGCTCTTTCGAAATTGATTCTGATTCTGATAAT TTTTTAGTCCATGTTTGGAATTTGTGTTAGACCTCAAACTCTCGTTAATCTATAAGCTACAACATGGAGAGCTTCTCGGC TAATGTGCTTTGGAGTGTGTGTCCAAAACATATCCAAACATGCTTGTTTTTGTGTCAAATTTAACATTCATCCCATGATT GTTGCATCTTTTGTGATAAGCTATATGGAGATTTTAATCATGATAAGTTTTTTGTGCTTATATGTTTGATTGTTTTGTTT GTACTAGATGCTGAGGTTGTTTGGTGTCAAGAAGAGCCAATGAACATGGGTGGATACAGTTACATTTTACCACGGCTTAT AACTTCAATGAAGGCTCTCGGTCGGGGAGGTTATGAGGATGTCAAATATGTTGGTCGTGCTCCATCGGCGGCCACAGCAA CTGGTTTCCTCAAGGTTCACCAGAGGGAGCAGGCTGAGCTAGTTCACAAAGCCATGCAACATAAACCAATCAACTTCCCT TACTGA
CDS sequence (LotjaGi5g1v0356200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATGGTTTAGAGCTGCTGCTTTAAGCATAGCAAAGCATGCAATTAGGAGAAATCTCTTTAGAGGTGGATCATCATA TTATGTGACAAGGACCACAAACCTTCCATCAACTAGTAGAAAGCTTCACACAACAATTTTCAAATCAGAAGCTCATGCTG CCCCGGTGCCTCGCCCTGTACCCCTTTCTAGGTTAACTGACAATTTCTTAGATGGGACTAGTAGTGCCTATTTAGAGGAG CTTCAAAGAGCTTGGGAAGCTGATCCGAGCAGTGTCGACGAGTCTTGGGACAATTTCTTCAGGAACTTTGTGGGTCAGGC TTCCACCTCCCCAGGAATTTCTGGTCAGACAATTCAGGAGAGTATGAGATTGCTGTTACTAGTGAGAGCATATCAGGTTA ATGGCCACATGAAAGCTAAGCTTGATCCTTTGGGTCTGAAAGAACGAAATATCCCTGATGAGTTAGATCCTGGCCTTTAT GGTTTCACTGAGGCTGATCTTGACAGGGAATTCTTTTTAGGGGTGTGGAATATGTCTGGATTTTTGTCCGAGAATCGTCC AGTGCAGACTCTTAGGTCCATTTTGACACGGCTTGAGCAAGCTTACTGTGGAAGCATTGGGTACGAGTATATGCATATAC CGGATCGGGACAAATGTAATTGGCTTAGGGACAAGATTGAAACACCTTCACCTACACAATTTAGCCGGGAGCGCCGCGAG GTTATTTTTGATAGGCTTGCTTGGAGTACACTCTTTGAGAACTTCTTGGCCACCAAGTGGACATCAGCAAAGAGGTTTGG GCTTGAAGGTGGAGAGACTCTTATTCCTGGAATGAAAGAAATGTTTGATCGAGCATCTGATCTTGGGGTTGAGAACATAG TTATGGGAATGGCACATAGGGGAAGATTGAATGTTTTAGGCAATGTAGTTCGAAAGCCACTTCGTCAGATTTTTTGTGAG TTTAGTGGTGGTCTACCTCAGGATGAAGTTGGGCTCTATACAGGAACTGGTGATGTTAAATATCACTTGGGAACATCTTA TGATCGCCCAACGAGGGGCGGGAGGAGGATACATCTATCTTTGATGGCAAATCCTAGTCACTTGGAAGCAGTCAACCCAC TTGTTGTTGGAAAAACTCGAGCGAAGCAGTACTACTCGAATGATGCGGAAAGGATGAAAAACATGGGTGTTTTGATTCAT GGAGATGGTAGTTTTGCTGGACAAGGTGTGGTCTATGAAACCCTTCATCTTAGTGCTCTTCCAAATTATACTACTGGTGG GACTATACACATTGTGTTCAACAATCAAGTTGCATTTACTACTGATCCTGAGTCAGGAAGATCATCACAATATTCCACTG ATGTTGCTAAAGCCTTAAATGCTCCTATCTTTCATGTCAATGGTGATGATGTGGAATCAGTTGTTCATGTCTGTGAACTT GCTGCCGAATGGCGCCAGACTTTCCATTCAGATGTGGTTGTTGACTTAGTGTGTTACCGTCGATTTGGGCACAATGAGAT TGATGAACCATCTTTCACACAGCCTAAAATGTATAAGGTCATTCGAAACCATCCATCAGCTCTTGAGATCTATCAGAAGA AACTTTTGGAATTAGGGGAGTTGACTCAAGAAGACATTGATAAGATACACAAGAAGGTCACATCAATTCTGAATGATGAA TTTTTGGCCAGCAAAGATTACATTCCAAAAAGAAGAGACTGGCTTTCAGCATATTGGTCAGGTTTCAAGTCACCTGAACA GCTTTCACGTATCCGGAACACTGGTGTGAAACCAGATATCTTGAAAAATGTTGGGAAAGCAATCACGGCCTTACCTGAAA GTTTGAATCCTCATAGAGCAGTGAAGAAGGTTTATGAACAGCGTGCCCAAATGGTTGAAACTGGGGAAGATATTGACTGG GGATTTGCGGAGGCACTTGCTTTTGCCACATTGATAGTAGAAGGTAACCATGTTCGATTAAGTGGTCAGGATGTTGAAAG AGGAACGTTTAGTCACCGCCACGCTGTAGTTCATGATCAGGCAACCGGGGAGAAATATTGCCCCCTTGACCATGTCATAA TGAATCAAAATGAAGAGATGTTTACTGTTAGCAATAGCTCGCTTTCTGAGTTTGGTGTTCTTGGATTTGAATTGGGTTAC TCAATGGAAAATCCTAATTCGTTGGTGATATGGGAGGCACAGTTTGGTGACTTTGCTAATGGGGCTCAAGTTATATTTGA CAATTTCTTGAGTTCTGGTGAGTCTAAGTGGCTCCGTCAAACTGGGCTTGTAGTGTTACTTCCTCATGGTTATGATGGTC AGGGTCCTGAGCATTCAAGTGGAAGATTGGAACGCTATCTACAGATGGCTGATGATCATCCTTATATTATTCCTGAGATG GATCCAACTCTTCGGAAACAAATTCAGGAGTGTAATTTGCAGATTGTGAATGTTACAACTCCTGCAAATTTCTTCCACGT TTTACGGCGGCAGATACATAGAGAATTCCGTAAACCTCTCATTGTAATGTCCCCGAAGAACTTGCTTCGCAGTAAGGTTT GCAGATCAAATTTATCTGAGTTTGATGATGTCCAAGGACACCCTGGTTTTGACAAACAAGGAACCAGATTTAAGCGCCTC ATAAAAGACCAAAATGACCACTCAAATGTTGAGGAGGGTATAAGGCGCTTAATACTCTGCTCCGGAAAGCTCTGTCCTTT CCCTTATGACCTTGTCCAACGAGAGCTTAAAAGATATCCAAATGCTGAGGTTGTTTGGTGTCAAGAAGAGCCAATGAACA TGGGTGGATACAGTTACATTTTACCACGGCTTATAACTTCAATGAAGGCTCTCGGTCGGGGAGGTTATGAGGATGTCAAA TATGTTGGTCGTGCTCCATCGGCGGCCACAGCAACTGGTTTCCTCAAGGTTCACCAGAGGGAGCAGGCTGAGCTAGTTCA CAAAGCCATGCAACATAAACCAATCAACTTCCCTTACTGA
Protein sequence (LotjaGi5g1v0356200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWFRAAALSIAKHAIRRNLFRGGSSYYVTRTTNLPSTSRKLHTTIFKSEAHAAPVPRPVPLSRLTDNFLDGTSSAYLEE LQRAWEADPSSVDESWDNFFRNFVGQASTSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLKERNIPDELDPGLY GFTEADLDREFFLGVWNMSGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIPDRDKCNWLRDKIETPSPTQFSRERRE VIFDRLAWSTLFENFLATKWTSAKRFGLEGGETLIPGMKEMFDRASDLGVENIVMGMAHRGRLNVLGNVVRKPLRQIFCE FSGGLPQDEVGLYTGTGDVKYHLGTSYDRPTRGGRRIHLSLMANPSHLEAVNPLVVGKTRAKQYYSNDAERMKNMGVLIH GDGSFAGQGVVYETLHLSALPNYTTGGTIHIVFNNQVAFTTDPESGRSSQYSTDVAKALNAPIFHVNGDDVESVVHVCEL AAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIRNHPSALEIYQKKLLELGELTQEDIDKIHKKVTSILNDE FLASKDYIPKRRDWLSAYWSGFKSPEQLSRIRNTGVKPDILKNVGKAITALPESLNPHRAVKKVYEQRAQMVETGEDIDW GFAEALAFATLIVEGNHVRLSGQDVERGTFSHRHAVVHDQATGEKYCPLDHVIMNQNEEMFTVSNSSLSEFGVLGFELGY SMENPNSLVIWEAQFGDFANGAQVIFDNFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSGRLERYLQMADDHPYIIPEM DPTLRKQIQECNLQIVNVTTPANFFHVLRRQIHREFRKPLIVMSPKNLLRSKVCRSNLSEFDDVQGHPGFDKQGTRFKRL IKDQNDHSNVEEGIRRLILCSGKLCPFPYDLVQRELKRYPNAEVVWCQEEPMNMGGYSYILPRLITSMKALGRGGYEDVK YVGRAPSAATATGFLKVHQREQAELVHKAMQHKPINFPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 903 | 902 | 0.0 | – | |
| PANTHER | 2 | 903 | 902 | 0.0 | ||
| PIRSF | 62 | 905 | 844 | 0.0 | ||
| Pfam | 67 | 106 | 40 | 3.5E-16 | ||
| TIGRFAM | 69 | 904 | 836 | 6.8E-293 | ||
| Gene3D | 116 | 204 | 89 | 8.4E-27 | – | |
| SUPERFAMILY | 152 | 583 | 432 | 5.08E-87 | ||
| Gene3D | 205 | 574 | 370 | 1.6E-159 | – | |
| Pfam | 246 | 567 | 322 | 1.4E-63 | ||
| CDD | 252 | 518 | 267 | 6.68167E-180 | – | |
| Gene3D | 596 | 884 | 289 | 1.1E-129 | – | |
| SUPERFAMILY | 621 | 857 | 237 | 6.56E-47 | ||
| Pfam | 637 | 850 | 214 | 2.1E-64 | ||
| SMART | 638 | 851 | 214 | 2.9E-52 | ||
| Gene3D | 776 | 903 | 128 | 1.1E-129 | ||
| PIRSF | 903 | 992 | 90 | 1.1E-21 | ||
| Pfam | 903 | 990 | 88 | 9.0E-27 | ||
| PANTHER | 903 | 997 | 95 | 0.0 | – | |
| PANTHER | 903 | 997 | 95 | 0.0 | ||
| Gene3D | 904 | 993 | 90 | 1.3E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxoglutarate dehydrogenase (succinyl-transferring) activity | Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2. | ||
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Molecular function | Oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. | ||
| Molecular function | Thiamine pyrophosphate binding | Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0356200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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