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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0356200 |
Transcript ID | LotjaGi5g1v0356200.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 2-oxoglutarate dehydrogenase E1 component family protein; TAIR: AT5G65750.1 2-oxoglutarate dehydrogenase, E1 component; Swiss-Prot: sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A072W2L0|A0A072W2L0_MEDTR E1 subunit-like 2-oxoglutarate dehydrogenase; Found in the gene: LotjaGi5g1v0356200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67121460..67125625) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATGGTTTAGAGCTGCTGCTTTAAGCATAGCAAAGCATGCAATTAGGAGAAATCTCTTTAGAGGTGGATCATCATA TTATGTGACAAGGACCACAAACCTTCCATCAACTAGTAGAAAGCTTCACACAACAATTTTCAAATCAGAAGCTCATGCTG CCCCGGTGCCTCGCCCTGTACCCCTTTCTAGGTTAACTGACAATTTCTTAGATGGGACTAGTAGTGCCTATTTAGAGGAG CTTCAAAGAGCTTGGGAAGCTGATCCGAGCAGTGTCGACGAGTCTTGGGACAATTTCTTCAGGAACTTTGTGGGTCAGGC TTCCACCTCCCCAGGAATTTCTGGTCAGACAATTCAGGAGAGTATGAGATTGCTGTTACTAGTGAGAGCATATCAGGTTA ATGGCCACATGAAAGCTAAGCTTGATCCTTTGGGTCTGAAAGAACGAAATATCCCTGATGAGTTAGATCCTGGCCTTTAT GGTTTCACTGAGGCTGATCTTGACAGGGAATTCTTTTTAGGGGTGTGGAATATGTCTGGATTTTTGTCCGAGAATCGTCC AGTGCAGACTCTTAGGTCCATTTTGACACGGCTTGAGCAAGCTTACTGTGGAAGCATTGGGTACGAGTATATGCATATAC CGGATCGGGACAAATGTAATTGGCTTAGGGACAAGATTGAAACACCTTCACCTACACAATTTAGCCGGGAGCGCCGCGAG GTTATTTTTGATAGGCTTGCTTGGAGTACACTCTTTGAGAACTTCTTGGCCACCAAGTGGACATCAGCAAAGAGGTTTGG GCTTGAAGGTGGAGAGACTCTTATTCCTGGAATGAAAGAAATGTTTGATCGAGCATCTGATCTTGGGGTTGAGAACATAG TTATGGGAATGGCACATAGGGGAAGATTGAATGTTTTAGGCAATGTAGTTCGAAAGCCACTTCGTCAGATTTTTTGTGAG TTTAGTGGTGGTCTACCTCAGGATGAAGTTGGGCTCTATACAGGAACTGGTGATGTTAAATATCACTTGGGAACATCTTA TGATCGCCCAACGAGGGGCGGGAGGAGGATACATCTATCTTTGATGGCAAATCCTAGTCACTTGGAAGCAGTCAACCCAC TTGTTGTTGGAAAAACTCGAGCGAAGCAGTACTACTCGAATGATGCGGAAAGGATGAAAAACATGGGTGTTTTGATTCAT GGAGATGGTAGTTTTGCTGGACAAGGTGTGGTCTATGAAACCCTTCATCTTAGTGCTCTTCCAAATTATACTACTGGTGG GACTATACACATTGTGTTCAACAATCAAGTTGCATTTACTACTGATCCTGAGTCAGGAAGATCATCACAATATTCCACTG ATGTTGCTAAAGCCTTAAATGCTCCTATCTTTCATGTCAATGGTGATGATGTGGAATCAGTTGTTCATGTCTGTGAACTT GCTGCCGAATGGCGCCAGACTTTCCATTCAGATGTGGTTGTTGACTTAGTGTGTTACCGTCGATTTGGGCACAATGAGAT TGATGAACCATCTTTCACACAGCCTAAAATGTATAAGGTTAGCCCTTTTGTTTATTATTCTCTTATTCCTTTTATGTGCA TATTGCTTTATGACAAGTTACTCAGATTTCAACTTTCTGGGCTATGTAAAGGTCATTCGAAACCATCCATCAGCTCTTGA GATCTATCAGAAGAAACTTTTGGAATTAGGGGAGTTGACTCAAGAAGACATTGATAAGATACACAAGAAGGTCACATCAA TTCTGAATGATGAATTTTTGGCCAGCAAAGATTACATTCCAAAAAGAAGAGACTGGCTTTCAGCATATTGGTCAGGTTTC AAGTCACCTGAACAGCTTTCACGTATCCGGAACACTGGGTATGATAAGTCAATGTTAATGTTGCTTGAGTCTTTTTTGTT ATAACAGCTGAATTCTATGATCTATCCTGTGCAGTGTGAAACCAGATATCTTGAAAAATGTTGGGAAAGCAATCACGGCC TTACCTGAAAGTTTGAATCCTCATAGAGCAGTGAAGAAGGTTTATGAACAGCGTGCCCAAATGGTTGAAACTGGGGAAGA TATTGACTGGGGATTTGCGGAGGCACTTGCTTTTGCCACATTGATAGTAGAAGGTAACCATGTTCGATTAAGTGGTCAGG ATGTTGAAAGAGGAACGTTTAGTCACCGCCACGCTGTAGTTCATGATCAGGCAACCGGGGAGAAATATTGCCCCCTTGAC CATGTCATAATGAATCAAAATGAAGAGATGTTTACTGTTAGCAATAGGTATTTTGCACTTCCATGTGTGTATAATGTTCT GAAGAAAACAAATTGGTTTTACATGGTTATTGCTCTAATTCTGTTATACATGTGGCTTCTTAAATTTGAATTCATATCTT GCTCATTTAATCATTGGTATGTGCTTTTTTTTTCAAATACTAGTTTAGTTTTAAGTTATCACATGATTTGTATTGAGCTG TATGTATGAGCTGTTTAAAACTGTGTTTGCCTAATATCTTTGGTGGATTTAATACAATATGCAGCTCGCTTTCTGAGTTT GGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCTAATTCGTTGGTGATATGGGAGGCACAGTTTGGTGACTT TGCTAATGGGGCTCAAGTTATATTTGACAATTTCTTGAGTTCTGGTGAGTCTAAGTGGCTCCGTCAAACTGGGCTTGTAG TGTTACTTCCTCATGGTTATGATGGTCAGGGTCCTGAGCATTCAAGTGGAAGATTGGAACGCTATCTACAGGTTCTCAGT TGTGAATCTGTGTTCTATTTCCTTTCAAACTACTTTAAGCTTTTATTCTTTCTGGTTACTAACATGTTCTGTAAATCATT TGTAGATGGCTGATGATCATCCTTATATTATTCCTGAGATGGATCCAACTCTTCGGAAACAAATTCAGGAGTGTAATTTG CAGATTGTGAATGTTACAACTCCTGCAAATTTCTTCCACGTTTTACGGCGGCAGGTTTGTAGTTGGTCCAGTAATTGATT AATGTTGGCTTTGTTACCTGAAGTTGTGTCTCATTTTTTCGCTGTTTCTTTTTATTTTCTTGCAGATACATAGAGAATTC CGTAAACCTCTCATTGTAATGTCCCCGAAGAACTTGCTTCGCAGTAAGGTTTGCAGATCAAATTTATCTGAGTTTGATGA TGTCCAAGGACACCCTGGTTTTGACAAACAAGGAACCAGATTTAAGCGCCTCATAAAAGACCAAAATGACCACTCAAATG TTGAGGAGGGTATAAGGCGCTTAATACTCTGCTCCGGAAAGGTGCATACACCATATACTCATTGGAACTAGCTATTAATC TTGTGGAGTTTATAATTATATCAACCATATTTGCAATTTTTATCTGGTGCTTCAATTAGATATATATGTATATGTTTTAT GTCCAGGACTTTCACAATTTTCTGAATATGCTTTTTGACTTTGTAACTATTAATATGTTATATGCAGGTTTACTATGAAC TTGATGAGCAAAGAACAAAGGATGATGCAAAGGATGTTGCAATATGTAGGGTGGAACAGCTCTGTCCTTTCCCTTATGAC CTTGTCCAACGAGAGCTTAAAAGATATCCAAGTATGTCTGTTAAAAATGCTCTTTCGAAATTGATTCTGATTCTGATAAT TTTTTAGTCCATGTTTGGAATTTGTGTTAGACCTCAAACTCTCGTTAATCTATAAGCTACAACATGGAGAGCTTCTCGGC TAATGTGCTTTGGAGTGTGTGTCCAAAACATATCCAAACATGCTTGTTTTTGTGTCAAATTTAACATTCATCCCATGATT GTTGCATCTTTTGTGATAAGCTATATGGAGATTTTAATCATGATAAGTTTTTTGTGCTTATATGTTTGATTGTTTTGTTT GTACTAGATGCTGAGGTTGTTTGGTGTCAAGAAGAGCCAATGAACATGGGTGGATACAGTTACATTTTACCACGGCTTAT AACTTCAATGAAGGCTCTCGGTCGGGGAGGTTATGAGGATGTCAAATATGTTGGTCGTGCTCCATCGGCGGCCACAGCAA CTGGTTTCCTCAAGGTTCACCAGAGGGAGCAGGCTGAGCTAGTTCACAAAGCCATGCAACATAAACCAATCAACTTCCCT TACTGA
CDS sequence (LotjaGi5g1v0356200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATGGTTTAGAGCTGCTGCTTTAAGCATAGCAAAGCATGCAATTAGGAGAAATCTCTTTAGAGGTGGATCATCATA TTATGTGACAAGGACCACAAACCTTCCATCAACTAGTAGAAAGCTTCACACAACAATTTTCAAATCAGAAGCTCATGCTG CCCCGGTGCCTCGCCCTGTACCCCTTTCTAGGTTAACTGACAATTTCTTAGATGGGACTAGTAGTGCCTATTTAGAGGAG CTTCAAAGAGCTTGGGAAGCTGATCCGAGCAGTGTCGACGAGTCTTGGGACAATTTCTTCAGGAACTTTGTGGGTCAGGC TTCCACCTCCCCAGGAATTTCTGGTCAGACAATTCAGGAGAGTATGAGATTGCTGTTACTAGTGAGAGCATATCAGGTTA ATGGCCACATGAAAGCTAAGCTTGATCCTTTGGGTCTGAAAGAACGAAATATCCCTGATGAGTTAGATCCTGGCCTTTAT GGTTTCACTGAGGCTGATCTTGACAGGGAATTCTTTTTAGGGGTGTGGAATATGTCTGGATTTTTGTCCGAGAATCGTCC AGTGCAGACTCTTAGGTCCATTTTGACACGGCTTGAGCAAGCTTACTGTGGAAGCATTGGGTACGAGTATATGCATATAC CGGATCGGGACAAATGTAATTGGCTTAGGGACAAGATTGAAACACCTTCACCTACACAATTTAGCCGGGAGCGCCGCGAG GTTATTTTTGATAGGCTTGCTTGGAGTACACTCTTTGAGAACTTCTTGGCCACCAAGTGGACATCAGCAAAGAGGTTTGG GCTTGAAGGTGGAGAGACTCTTATTCCTGGAATGAAAGAAATGTTTGATCGAGCATCTGATCTTGGGGTTGAGAACATAG TTATGGGAATGGCACATAGGGGAAGATTGAATGTTTTAGGCAATGTAGTTCGAAAGCCACTTCGTCAGATTTTTTGTGAG TTTAGTGGTGGTCTACCTCAGGATGAAGTTGGGCTCTATACAGGAACTGGTGATGTTAAATATCACTTGGGAACATCTTA TGATCGCCCAACGAGGGGCGGGAGGAGGATACATCTATCTTTGATGGCAAATCCTAGTCACTTGGAAGCAGTCAACCCAC TTGTTGTTGGAAAAACTCGAGCGAAGCAGTACTACTCGAATGATGCGGAAAGGATGAAAAACATGGGTGTTTTGATTCAT GGAGATGGTAGTTTTGCTGGACAAGGTGTGGTCTATGAAACCCTTCATCTTAGTGCTCTTCCAAATTATACTACTGGTGG GACTATACACATTGTGTTCAACAATCAAGTTGCATTTACTACTGATCCTGAGTCAGGAAGATCATCACAATATTCCACTG ATGTTGCTAAAGCCTTAAATGCTCCTATCTTTCATGTCAATGGTGATGATGTGGAATCAGTTGTTCATGTCTGTGAACTT GCTGCCGAATGGCGCCAGACTTTCCATTCAGATGTGGTTGTTGACTTAGTGTGTTACCGTCGATTTGGGCACAATGAGAT TGATGAACCATCTTTCACACAGCCTAAAATGTATAAGGTCATTCGAAACCATCCATCAGCTCTTGAGATCTATCAGAAGA AACTTTTGGAATTAGGGGAGTTGACTCAAGAAGACATTGATAAGATACACAAGAAGGTCACATCAATTCTGAATGATGAA TTTTTGGCCAGCAAAGATTACATTCCAAAAAGAAGAGACTGGCTTTCAGCATATTGGTCAGGTTTCAAGTCACCTGAACA GCTTTCACGTATCCGGAACACTGGTGTGAAACCAGATATCTTGAAAAATGTTGGGAAAGCAATCACGGCCTTACCTGAAA GTTTGAATCCTCATAGAGCAGTGAAGAAGGTTTATGAACAGCGTGCCCAAATGGTTGAAACTGGGGAAGATATTGACTGG GGATTTGCGGAGGCACTTGCTTTTGCCACATTGATAGTAGAAGGTAACCATGTTCGATTAAGTGGTCAGGATGTTGAAAG AGGAACGTTTAGTCACCGCCACGCTGTAGTTCATGATCAGGCAACCGGGGAGAAATATTGCCCCCTTGACCATGTCATAA TGAATCAAAATGAAGAGATGTTTACTGTTAGCAATAGCTCGCTTTCTGAGTTTGGTGTTCTTGGATTTGAATTGGGTTAC TCAATGGAAAATCCTAATTCGTTGGTGATATGGGAGGCACAGTTTGGTGACTTTGCTAATGGGGCTCAAGTTATATTTGA CAATTTCTTGAGTTCTGGTGAGTCTAAGTGGCTCCGTCAAACTGGGCTTGTAGTGTTACTTCCTCATGGTTATGATGGTC AGGGTCCTGAGCATTCAAGTGGAAGATTGGAACGCTATCTACAGATGGCTGATGATCATCCTTATATTATTCCTGAGATG GATCCAACTCTTCGGAAACAAATTCAGGAGTGTAATTTGCAGATTGTGAATGTTACAACTCCTGCAAATTTCTTCCACGT TTTACGGCGGCAGATACATAGAGAATTCCGTAAACCTCTCATTGTAATGTCCCCGAAGAACTTGCTTCGCAGTAAGGTTT GCAGATCAAATTTATCTGAGTTTGATGATGTCCAAGGACACCCTGGTTTTGACAAACAAGGAACCAGATTTAAGCGCCTC ATAAAAGACCAAAATGACCACTCAAATGTTGAGGAGGGTATAAGGCGTTTACTCTGTCCTTTCCCTTATGACCTTGTCCA ACGAGAGCTTAAAAGATATCCAAATGCTGAGGTTGTTTGGTGTCAAGAAGAGCCAATGAACATGGGTGGATACAGTTACA TTTTACCACGGCTTATAACTTCAATGAAGGCTCTCGGTCGGGGAGGTTATGAGGATGTCAAATATGTTGGTCGTGCTCCA TCGGCGGCCACAGCAACTGGTTTCCTCAAGGTTCACCAGAGGGAGCAGGCTGAGCTAGTTCACAAAGCCATGCAACATAA ACCAATCAACTTCCCTTACTGA
Protein sequence (LotjaGi5g1v0356200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWFRAAALSIAKHAIRRNLFRGGSSYYVTRTTNLPSTSRKLHTTIFKSEAHAAPVPRPVPLSRLTDNFLDGTSSAYLEE LQRAWEADPSSVDESWDNFFRNFVGQASTSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLKERNIPDELDPGLY GFTEADLDREFFLGVWNMSGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIPDRDKCNWLRDKIETPSPTQFSRERRE VIFDRLAWSTLFENFLATKWTSAKRFGLEGGETLIPGMKEMFDRASDLGVENIVMGMAHRGRLNVLGNVVRKPLRQIFCE FSGGLPQDEVGLYTGTGDVKYHLGTSYDRPTRGGRRIHLSLMANPSHLEAVNPLVVGKTRAKQYYSNDAERMKNMGVLIH GDGSFAGQGVVYETLHLSALPNYTTGGTIHIVFNNQVAFTTDPESGRSSQYSTDVAKALNAPIFHVNGDDVESVVHVCEL AAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIRNHPSALEIYQKKLLELGELTQEDIDKIHKKVTSILNDE FLASKDYIPKRRDWLSAYWSGFKSPEQLSRIRNTGVKPDILKNVGKAITALPESLNPHRAVKKVYEQRAQMVETGEDIDW GFAEALAFATLIVEGNHVRLSGQDVERGTFSHRHAVVHDQATGEKYCPLDHVIMNQNEEMFTVSNSSLSEFGVLGFELGY SMENPNSLVIWEAQFGDFANGAQVIFDNFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSGRLERYLQMADDHPYIIPEM DPTLRKQIQECNLQIVNVTTPANFFHVLRRQIHREFRKPLIVMSPKNLLRSKVCRSNLSEFDDVQGHPGFDKQGTRFKRL IKDQNDHSNVEEGIRRLLCPFPYDLVQRELKRYPNAEVVWCQEEPMNMGGYSYILPRLITSMKALGRGGYEDVKYVGRAP SAATATGFLKVHQREQAELVHKAMQHKPINFPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 898 | 897 | 0.0 | ||
PANTHER | 2 | 898 | 897 | 0.0 | – | |
PIRSF | 62 | 986 | 925 | 0.0 | ||
Pfam | 67 | 106 | 40 | 3.5E-16 | ||
TIGRFAM | 69 | 983 | 915 | 0.0 | ||
Gene3D | 116 | 204 | 89 | 8.3E-27 | – | |
SUPERFAMILY | 152 | 583 | 432 | 5.0E-87 | ||
Gene3D | 205 | 574 | 370 | 1.6E-159 | – | |
Pfam | 246 | 567 | 322 | 1.4E-63 | ||
CDD | 252 | 518 | 267 | 6.36892E-180 | – | |
Gene3D | 594 | 866 | 273 | 6.3E-123 | – | |
SUPERFAMILY | 621 | 857 | 237 | 6.48E-47 | ||
Pfam | 637 | 850 | 214 | 2.1E-64 | ||
SMART | 638 | 851 | 214 | 2.9E-52 | ||
Gene3D | 875 | 987 | 113 | 1.5E-27 | ||
Pfam | 898 | 984 | 87 | 6.6E-27 | ||
PANTHER | 898 | 991 | 94 | 0.0 | – | |
PANTHER | 898 | 991 | 94 | 0.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Oxoglutarate dehydrogenase (succinyl-transferring) activity | Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2. | ||
Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
Molecular function | Oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. | ||
Molecular function | Thiamine pyrophosphate binding | Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0356200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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