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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0358900 |
| Transcript ID | LotjaGi5g1v0358900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin-repeat protein; TAIR: AT3G12360.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A3KBV8|A3KBV8_LOTJA IGN1; Found in the gene: LotjaGi5g1v0358900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67337996..67341160) extracted from Lotus japonicus Gifu genome v1.2.
TCTAGGTCAAAGGGACATAGAAAAGGAAAAGGCTGCTATGACTCCACCACAGACTCCACTTTCTGAGATTTCGCCGTCGC CGTCTCCGTCGTCATCCACGGCGCCGGCGCTGGTGCTGTCGAACTCCGGGAAGCGGATCGACCAGGCCGGGAAGAAGAAG TACGTGAAGCAGGTGACAGGGCGCCACAACGACACGGAGCTGCACCTGGCGGCGCAGAGGGGCGATGTTGGTGCGGTCAG GCAGATCCTTCTCGACATCGATTCTCAGATAATGGGGACTCATGGCGGCGGCGGCGGCGGCGACGGCGATGTTGTTGATC TCAACTCGGAGATTGCTGAGGTGCGTGCTTGTGTTGTGAATGAAGAGAATGAGCTTGGAGAAACTGCTTTGTTCACTGCA GCTGAGAGGGGACACCTTGATGTTGTCAAGGAGCTGTTGAAACATTCCAACCTTAAAAAGAAGAACCGATCTGGCTTTGA TCCTTTGCATATTGCTGCTAGTCAAGGCCACCATGGTATCCCTCACCATCCCTTTATTTTTCCTCAGAATCAATTCTGGC AACAAGGAGCTACTCACAAAAGCTAACTGCTTATTCACTTATACTTTTAGTTGCCAATTTCAATTTCATTTTAATATTCA CTTCATTGATTTAAGCACATGAGACTAAATTTGTCATTGATCAAGTAAGTTATATGAATTAAGCACTTATGTTGCTTGAG GTGTTAATTAAAGAAAATCAATAATTATGCTTTGAATGAAAAACTTGAGAGGAAAGTTATGAAGCAATAGAATCATATAT GTTTTTATGTTATGGAGAAAAGCCTACCAAATTTGGAGATAGACCAATCTTTGTTTACTACTGTATTCTCTTAATTTAAT GGCTGGCTTATTTGGACTCTTAACTGGTTGGCTCTGATAGCTTTTGGTTCATCCTTTGTGATGAGGACCTTCAAATTGTT GGTGTGTGATTTTATTGCGTCTTAATGTAGTTTAATGTGAGTACTTTGTTTTTTGTTCTTCACTGTAATCCATTGTATAT TTTCGTTTGCAGCCATCGTTCAGGTTTTACTAGATTATGACCCTGGATTAAGCAAAACTATTGGTCCGTCCAATGCTACT CCGCTTATAACAGCGGCGACAAGAGGGCACGTGGAAGTGGTGAACGAGCTGCTGTCAAAGGATTGCAGCTTGTTGGAAAT CGCTAGATCCAATGGCAAAAGTCCATTGCATTTGGCTGCTCGTCAGGGTCATGTGGAGATTGTAAGAGCCTTGCTCAGTA AAGATCCACAGTTGGCTCGGAGGACCGACAAGAAAGGACAAACTGCGTTGCATATGGCAGTGAAAGGGCAAAGTGCTGAT GTAGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTCATGCTTCCTGACAAATTTGGTAACACAGCATTACACGTGGC AACCAGGAAAAAGCGAGTTGAGGTATGTCAACATTTGCAAAGCGTTACAAGCACCATGCAAATATAGATGAGACAGTACT ATACTACAAATTAAGATACTGAATAAATGAGGTTTTCATCTCATCTCATGACTAAGATGCCATGTCCTAGTAGTAGGGTA CCTGAGTTTTTCAGTTTTGAACCTAGGGTACTATATTATATTCTACTAAAAATGCAAACAAAGCTGCTGATTTGGGGTGC GTTTGGAACAGTGTTGTTAATGGCGGTTGGCGGACTATGGCGGAGAGCCAAAAACCCGCCATGAGATTCCACCATGGCAC CGCCATGACCAATATTTGATAACACTGGTGTGGAAGAATTTATTTGGGCAAGGGTTTATCTTAAAGCATAAGAGCTTTGC TATTTGGCTCGAAGGGTCTCAATACGAACTGAACACATGTGATGTGAGCGTAGGAGTAAATTACGGGAATAGTTAAACAT ACAAAAGAGGGATTTAGGAGAATGTAATGAATTCCATATTTGCTTGGTGTTTGAATATGAATTGCTCGAGCCATAGAGCA TTTCCCATAGCATAAACACTTGGTTAAGCGTATGATCTACCTGTAAGCTCTTTTTAGCTTATTTTGATAAGTTCCTCTAA TTAGCAATAAACACTTGTACAGTTATACCTATATAAGCTCTATTGAACTTATTTCAATTAGTTTCTCAAACTAGCTTATC AACAAACAGCAACCTTAGTATGTGGTTTAACATAAATTTGATCAGAAGTTTGAGGTCCTTTATTTTTTTTATTAACATAG ATACATGCAAAGCCTCCAGATATTTTTAAGCACCCATTACAGTTCCTAAAATGAAAAATCTAATTTTTTAGTTTCTCAAT TTCTTGCACAGATAGTGAATGAGTTGTTAAATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCC CTCGACATTGCTGAAAATCTTCCCCTCTCTGAAGAGGCGTCAGATATAAAGGACTGCCTTTCTCGGTATGGGGCACTTAG AGCGAATGAGCTGAATCAACCAAGGGATGAACTGAGGAAAACTGTTACTCAGATTAAGAAAGACGTTCACACCCAGCTGG AGCAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGCTAAGGAAACTCCACAGGGAAGGAATCAATAAC GCCACAAACTCCGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCCTTTGCTGCTATATTCACCGTGCCTGGTGGGGA TAACGATGATGGCTCAGGAGTGGTAGCGGCCTATTCTGCTTTTAAAATCTTCTTCATCTTCAATGCTATTGCGCTTTTTA CATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTGGTCAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTGGAGGTGATT AACAAGCTTATGTGGTTGGCTTCTGTATGCACCTCAGTGGCGTTTATCGCGGCTTCATACATAGTTGTAGGTCGGAAGAA TGAGTGGGCTGCAATTCTGGTTACAGTAGTTGGAGGTGTGATCATATCAGGAGTTATTGGCACCATGACATACTATGTAG TGAGGTCTAAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAGCAGGCCAGGAGGAGTGGATCCAACTCATGGCATCAT TCGGAGTTCTCTAACTCCGAGGTTGATCCAATTTACGCGCTTTGA
CDS sequence (LotjaGi5g1v0358900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCCACCACAGACTCCACTTTCTGAGATTTCGCCGTCGCCGTCTCCGTCGTCATCCACGGCGCCGGCGCTGGTGCT GTCGAACTCCGGGAAGCGGATCGACCAGGCCGGGAAGAAGAAGTACGTGAAGCAGGTGACAGGGCGCCACAACGACACGG AGCTGCACCTGGCGGCGCAGAGGGGCGATGTTGGTGCGGTCAGGCAGATCCTTCTCGACATCGATTCTCAGATAATGGGG ACTCATGGCGGCGGCGGCGGCGGCGACGGCGATGTTGTTGATCTCAACTCGGAGATTGCTGAGGTGCGTGCTTGTGTTGT GAATGAAGAGAATGAGCTTGGAGAAACTGCTTTGTTCACTGCAGCTGAGAGGGGACACCTTGATGTTGTCAAGGAGCTGT TGAAACATTCCAACCTTAAAAAGAAGAACCGATCTGGCTTTGATCCTTTGCATATTGCTGCTAGTCAAGGCCACCATGCC ATCGTTCAGGTTTTACTAGATTATGACCCTGGATTAAGCAAAACTATTGGTCCGTCCAATGCTACTCCGCTTATAACAGC GGCGACAAGAGGGCACGTGGAAGTGGTGAACGAGCTGCTGTCAAAGGATTGCAGCTTGTTGGAAATCGCTAGATCCAATG GCAAAAGTCCATTGCATTTGGCTGCTCGTCAGGGTCATGTGGAGATTGTAAGAGCCTTGCTCAGTAAAGATCCACAGTTG GCTCGGAGGACCGACAAGAAAGGACAAACTGCGTTGCATATGGCAGTGAAAGGGCAAAGTGCTGATGTAGTGAAATTGCT TCTTGATGCAGATGCTGCTATTGTCATGCTTCCTGACAAATTTGGTAACACAGCATTACACGTGGCAACCAGGAAAAAGC GAGTTGAGATAGTGAATGAGTTGTTAAATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCCCTC GACATTGCTGAAAATCTTCCCCTCTCTGAAGAGGCGTCAGATATAAAGGACTGCCTTTCTCGGTATGGGGCACTTAGAGC GAATGAGCTGAATCAACCAAGGGATGAACTGAGGAAAACTGTTACTCAGATTAAGAAAGACGTTCACACCCAGCTGGAGC AAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGCTAAGGAAACTCCACAGGGAAGGAATCAATAACGCC ACAAACTCCGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCCTTTGCTGCTATATTCACCGTGCCTGGTGGGGATAA CGATGATGGCTCAGGAGTGGTAGCGGCCTATTCTGCTTTTAAAATCTTCTTCATCTTCAATGCTATTGCGCTTTTTACAT CTTTGGCTGTTGTGGTTGTTCAAATTACCCTGGTCAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTGGAGGTGATTAAC AAGCTTATGTGGTTGGCTTCTGTATGCACCTCAGTGGCGTTTATCGCGGCTTCATACATAGTTGTAGGTCGGAAGAATGA GTGGGCTGCAATTCTGGTTACAGTAGTTGGAGGTGTGATCATATCAGGAGTTATTGGCACCATGACATACTATGTAGTGA GGTCTAAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAGCAGGCCAGGAGGAGTGGATCCAACTCATGGCATCATTCG GAGTTCTCTAACTCCGAGGTTGATCCAATTTACGCGCTTTGA
Protein sequence (LotjaGi5g1v0358900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPPQTPLSEISPSPSPSSSTAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDIDSQIMG THGGGGGGDGDVVDLNSEIAEVRACVVNEENELGETALFTAAERGHLDVVKELLKHSNLKKKNRSGFDPLHIAASQGHHA IVQVLLDYDPGLSKTIGPSNATPLITAATRGHVEVVNELLSKDCSLLEIARSNGKSPLHLAARQGHVEIVRALLSKDPQL ARRTDKKGQTALHMAVKGQSADVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLNLPDTNVNALTRDHKTAL DIAENLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNA TNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVAAYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVIN KLMWLASVCTSVAFIAASYIVVGRKNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQQARRSGSNSWHHS EFSNSEVDPIYAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 399 | 399 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 10 | 563 | 554 | 2.3E-257 | – | |
| PANTHER | 10 | 563 | 554 | 2.3E-257 | – | |
| MobiDBLite | 12 | 27 | 16 | - | – | |
| Gene3D | 30 | 171 | 142 | 4.3E-21 | ||
| SMART | 50 | 79 | 30 | 510.0 | ||
| Pfam | 55 | 171 | 117 | 3.1E-14 | ||
| SUPERFAMILY | 55 | 327 | 273 | 7.76E-52 | ||
| ProSiteProfiles | 113 | 137 | 25 | 8.63 | ||
| ProSiteProfiles | 113 | 323 | 211 | 44.856 | ||
| SMART | 113 | 144 | 32 | 0.017 | ||
| SMART | 145 | 174 | 30 | 0.008 | ||
| ProSiteProfiles | 145 | 167 | 23 | 9.805 | ||
| Gene3D | 173 | 376 | 204 | 3.2E-38 | ||
| SMART | 179 | 208 | 30 | 0.81 | ||
| Pfam | 180 | 237 | 58 | 1.8E-11 | ||
| SMART | 213 | 242 | 30 | 3.2E-5 | ||
| ProSiteProfiles | 213 | 245 | 33 | 12.823 | ||
| Pfam | 245 | 309 | 65 | 2.3E-11 | ||
| SMART | 247 | 276 | 30 | 7.5E-4 | ||
| ProSiteProfiles | 247 | 279 | 33 | 10.499 | ||
| SMART | 281 | 311 | 31 | 0.0021 | ||
| Pfam | 395 | 501 | 107 | 9.5E-28 | ||
| TMHMM | 400 | 422 | 23 | - | – | |
| Phobius | 400 | 422 | 23 | - | – | |
| Phobius | 423 | 441 | 19 | - | – | |
| Phobius | 442 | 462 | 21 | - | – | |
| TMHMM | 442 | 464 | 23 | - | – | |
| Phobius | 463 | 481 | 19 | - | – | |
| Phobius | 482 | 502 | 21 | - | – | |
| TMHMM | 484 | 501 | 18 | - | – | |
| Phobius | 503 | 507 | 5 | - | – | |
| Phobius | 508 | 533 | 26 | - | – | |
| TMHMM | 511 | 533 | 23 | - | – | |
| Phobius | 534 | 573 | 40 | - | – | |
| MobiDBLite | 541 | 573 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0358900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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