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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0362600 |
| Transcript ID | LotjaGi5g1v0362600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 2-isopropylmalate synthase; TAIR: AT1G74040.1 2-isopropylmalate synthase 1; Swiss-Prot: sp|Q9C550|LEU12_ARATH 2-isopropylmalate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1NJA5|I1NJA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0362600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67688995..67696256) extracted from Lotus japonicus Gifu genome v1.2.
CATTTTTATAGCTCCATGTGGCATGTCCTTATCTTATCCACGCAAAAATGGGCCCTTCCCATTCCCACGTGAGACACCAA CACTCACTCGTGTCATGCTGCCCAGTCAAAACCGCCGCCATTGAGCCGCCACTTCACTATACTGCACCTCGCCACTTCAG CTCAGCCTCTAGGGTTTCCATTCCATGGCGGCCAACGCGATACGCACCCCCGTCGTCTCTCCTTCCACCTCCACCTGCTT TCCCTCTTCCCCCAACCACCGCGTCCTCCTCCGCCTCCACTTCCCCCAATCCTCTAAACAACACCGCTATTGCTCCTCCT CTTCTTATCCCAAATTCACCGTTTCCTGCTCCCAATTCCAACCTGAAACCACTCGCCGGCGTCCTCCTTACATCCCGAAC CACATCCCTGACCCTTCCTATGTTCGCATCTTCGACACCACCCTCCGCGACGGCGAGCAGTCCCCCGGCGCCTCCATGAC CTCCAAGGAGAAGCTCGACATTGCCCGCCAGCTTGCCAAGCTCGGCGTTGACATCATCGAGGCCGGCTTCCCTGCCGCCT CCAAGGACGACTTCGAGGCAGTCAAAATGATCGCGCAGGAGGTTGGAAACGCCGTCGATGACGAAGGCTACGTTCCCGTC ATCTGTGGCCTCTCCAGGTGTAATGAGAAGGATATTCGAACCGCTTGGGATGCCGTTAAGCACGCGAAGAGGCCCAGGAT TCATACCTTCATTGCTACCAGTGGCATTCACATGGAGTACAAGCTCAGAATGTCTAAAGAACAGGTCATTGACAAAGCCC GCAGTATGGTCAAGTTCGCCCGCAGTTTGGGCTGCAATGACGTCGAGTTCAGTCCTGAAGATGCTGGCAGGTCAATTGCT CTGTGACTCTTTGATTTTGATCAATTCACTCAGTGTTTAGATTTATTAAGCTCAAGTTGAACCACATTTTCATCATACTG AACTAAAATGTAGAAAATGGTAATCATATTTGCATTTTGTATAAAAGCAAAAACAAACACACACTCAACTTTGTCATTGG AAGGAACTAGTAGTTAACTATAAGTATTGTTTTGTTTTGTTTGTCTTTATGGTAGCAGATCGGAGAGGGAGTTTCTTTAT GAAATTCTAGCAGAAGTTATCAAGGCTGGGGCCACAACCCTTAATATACCGGACACTGTTGGCATAACGATGCCGAGTGA GTTTGGGAAACTGATTGCTGATATCAAAGCTAATACCCCTGGAGCAGAAAATGTTGTTATTTCCACCCATTGTCAGAATG ATCTTGGGCTTTCTACCGCAAACACTATAGAGGTAGGTGTTCTATTCCCATGCCTTTGCCCATTGGTACGGTGCGAGCAA TCAAAATATGTTCTGAATTTGTATGCTCTTCTCTTGACAGGGTGCACATGCTGGTGCAAGGCAACTGGAAGTAACAATTA ATGGGATCGGTGAAAGGGCTGGAAATGCCTCATTAGAAGAGGTGAGGAGGCCCCATCTTCTATTCTCTAGTTGATGCAAT CACCATTGCTGGAGCAGAAGCTTAATCATCGAATATTTTGTTGAATGCCTATATATATTTTTCCGTCAATAACTGTGTAA TGGAGGGTTCTATTAATCTATTTTTAAGTTTTTGGAAATTCACTTTCTGTTTGTTGTTTCAAGGTTGTGATGGCCCTAAA ATGCGGAGGACATGTCTTTGGCAATCTGTACACTGGCGTTAATGCAAAGCACATCTACCTGACAAGCAGGATGGTTTTAT ATCTGAACTGATCTTTCTGTTGTTTCTTTTCCCTTTTAAAGACCTTCATTGATTGTTTGGTGTGTCATAATCTTTTGCTG TAGGTCGAAGAGTACTCTGGTTTGCAGTTACAACCGCACAAGGCCCTTGTAGGAGCTAATGCCTTCGCTCATGAAAGTGG CATTCATCAGGTTGGTTATGATAATCAGAATTAGTGGTATGAAAGAGTGAGCCTCGGTACAAGGTTGCGGCCTTGTGGCT TGGTGATCACTGGTTCTAATTTTGAAACCTCCCTCTCTGCTTACATGTGTATTGTTGAGTAAATGTACATCTAACCCTCC CCAAAGCACACAGGGGTTTGAGCCTCATACACAGGCTTCCCTTCCCTTCCCCTCCTTTACTTTTTGTTTTTCAATTTCAA GCTCAGTTCAAAGATAATGTTGGATTGTTTAAGTTAAAGAATAATTGATTTGGTTTCCTTGTGAGACTCAATCCAGAGCC ACATTAATGTTTTGTTTTGGTTCGTCTTACTTGTGAACAATTGATTTGGTTTCCTTGGCATAATAATAGAACCAGGTTTC AAAACTATTTTTTTATGGGTGCAGTACATGTCTTTTGTCTGTTTTACGAGCTAGTGCATTTTACTTTTGGGAGAATTAAA AATAACTTGTGATAGTTGATACACTATGAAAGAAGAATAATTACTTAGTGTGGTTATTCAAACCAAATTTAACCGATATA TTATGCATTATTGACCACTGTTTTGTAGGACGGAATGTTAAAACACAAAGGTACATATGAAATAATATCTCCTGAGGACA TTGGCCTTGAAAGATCCAATGAAGCTGGTATTGTACTGGGAAAGCTTAGGTATGCAATTTATATATTTTAGAAACTTATA TTATATCTGTGTGGATCTGGTACTGTTAGGACCCGAAAATCCTAACAGGGAAATCGGTAGAGGAAAGAGGACAAAAGGAA ATATTTTTGGTATTTTATTATAAAAGACTGGAAAATAAAGATAGATAAGAACTAAGAGGCTGGTTCCTCTTAGAACCAAG AGGCTGGTTCCTCTTCAATAGGGTTGGTTCCCTTTACAAACTCAATAATCTAATCCATGATTCTAACCTAAGGAGGGCAC TCCTATTTATAATAACTAATCCTAATATCAATAACTTAATCCCTAAGAAATACAGAAGATATACTACTAGAATAAGAGAT AACATCCTAATATAAAAGATACTATAAAGATAGATTCCTAAATTAAATCCTAATATAATTAATCCTAACAATACTCCCCC CCTAAAATCAACCTTGTCCTCAAGGTTGGAAGTAGCATAGTAGATCCAATCTTCCCCTCCCGGGTCCCATTGTAGGCGGC AAACCGAGTGAAGCACCAGAACAGCAAGTGTCCAAGTGTCCATATCTGGCGGCATTGGAGGAGGTCGCTTGGACAACACA TTGAGGACCCATGGTTGCATTTGCATTGAGTCCTTATCCCTCCGCATCGAGTCACCATCTTCATCCAGAAAGCCCATTAT TAATTGTGTACTGAATTGGTTGGAAGCCCCTACTTTGTAAAACTTTTCATTGTGAAGCGCGTTCACATTCATTGACATTG GAGCATCTTCTATAGAGATTGTGCTTCCAAAAGACTTAATACTAGAGATGTGGGGTATAATGGCAGCATCGCTGGTGAGA CCTTCCATTGGCAAAGCAGTGTCTTGCTTGGACTCATTATAAATTTCAGAAGTAAGCGCAACATGTTGATTGCTTGAGTC CTCCTTGAGTACATCTTCGCTTGAGTCCTCCTTGAGTTCGTTTTCTGCTTCCACCAAAATACTAGCAATGGTTTCCCCTT CGATGTGAGAAGGAGTAGGAAAAGAAACTGCATCAGCCGGTGGTTGTTCTTGAGCAAGTCGGAATTCGACATCTCGTGCA AGCTCTATGGCGTGCGACGCATTGGTAGGGCGTAAAGAACGCACCCGCCAACGAATCTGTGGCTTGAGGCCATGTAGAAA ATAACCCAACAACAACTGAAGTTCCGACAAATTTGGAATTCTGGTCATCAAAGCTTTAAATTCCAGCACATACGCGTCAA CACTACCTCCTTGTCTAAGAGATCGCAGCCTCATGGAAATAGTATTATAACGATCGTCACCAAAACGCCGAAGCAAGAGT ATGATGAATACATTCCAAGTAAGCTTGAGATTACGAAAACAGTAACAATAAAACCAATGAGTGGCTGCTTCCCCGTCCAT GCTAAGGGATGCCAACTGCAACTTATCTAGATCCCGCAAACAGTGTACCTCGAAGATTTTCTGGGCTCGAGCGATCCAGC AAACTGGATCCACCCCGTCAAACTTGGGAAACTCCTCGACAATAGTCTGCCATTCTTCCATTGAAAGGACCATGATGTCC AGAACTTCTGTAAAAAATACAATATTAGATCCTAAAATAAAAGATAGAATCCTAAATTAAAATAAATTAATCCTAACAGG TACACCGTGCTAATTCCTCCTTATGTGCTTCTCAATTTCTTTAGAATTTATCAACTCTTTCATTAAGTATTATATCTATA TGTAGCTGTAGCCTCAGTGGTTACTATCAACAGACTTAATGAAACAAATTGTAATAATTTTTAATCTGTCCTTCTTTACA TACACTCTAAGTGATTGTTAAGTATTAGGCATGATTTGTGTTATTTATCCATTGTTTGTTTGTCACTAGTTGTAGTATTT GATGTTCTATTATGCATTGGCTAGAGTATTTAGCATTTTATTGTGGAGATTTGTATGTACTTATATAAGTACTGTATCAC TAGTATATTTTCAGCAGCATTTTGACTGGTGTTTCTCTTTATTTGTTATTGTTGTCATGTTAATGGTTGTTTCATGTCTC TTACTTCCTCTGGCGGCGTGTCCAATTAAATTGTCTGTTATTTTATTTCATCCTTCTAACATACACTTATACTCCTATTG ATATAGTGGACGGCATGCTTTGAGAAAGCGACTTCAAGAGGTATTCAAATATTTGATATAGTGGAATGCATGCTTTGATA TAGTGGACGACATCCTTCTAAAGGCTTTTTGAATGTTTTCTTCTGATATATGAGTTATTCTCTATTGTTTCAGCTTGGTT ATGAACTTAAAGATGACCAAGTTGAGAGTTTATTTTGGCGTTTCAAAGCAGTTGCTGAGCAAAAAAAGGTATTTTTGAAC TAGTGATTTTCTGTTAATTCTTTTGCTTTCAAGTGCTTCTGATTATAATGTGCAAGTCACTATATCTAGCACTTGGTCAG CACTCGGTCATGCATTTAATATGGTCAGTTATAAATGGAGGTAGTAGTATCTCTTTTCTGTACAGAAGCATAGTTGGACT GTAAAATAATAAGACATCTGCTGGTTAACTTTCTGTTATTTTGAATCAGAGGGTTACTGATGCTGACCTCAGAGCATTGG TATCAGATGAAGTCTTTCAGGCAGAGCCTGTTTGGAAACTTGGTGATTTGCAGGTGAATTGAAATATTCTCTGAAATTTC AATATTTATAGTGGCTTGACAAATGATAGAATAGAACAAACATAAGCTAATCAAATATTTACCCAGTGCAGGTGACTTGT GGAACTCTTGGTCTTTCAACTGCAACTGTTAAACTTGTTAGTGATGATGGTAGCACGCATGTTGCTTGTGCCATTGGTAC AGGACCAGTGGATTCGGCTTACAAGGCTGTTGATCTAATAGTAAAGGTTTGTATCGCTTCCTACTCTTTGTGCAAGTATT TTTCTCTCCCATTTCCTTTGATTCAGTGCAAGGCATTTTATGGTATTCTTTTGGTCCAAATACTCACATTTTAATGGTTA AAGTTGTTGTGGTCTTTTACCTTGTCCTGAGATTGAGGCTTTCATATGAAAAAAAAATTAAAATAATTTTATTTTTCAAG TTTAAGTCATAAAACTACTACTTGACATCATCAGTAGTGCAATTAGGAGTATTAACTGGATTTGGTTCATATTGCTTTGT CTCAAGTTATGACTTATGAGAGAGAAAGGCCAGAAACAAGATTAATGCACAAACAGTGGATTTGGTATTGTAGCTGTTTC TGTGTCTTTCATAACATGAGAGAAACATGAAAGGATCAAATTCTGTATCAAGTTAGGGTATTGCAACACATTACATCCTA TAAATAATATCTTCAATTTATTTTTGTTAACCATCTTTCTCTTTTCTTCTTCCATAACCATAATTCTATAAGTCAGACTG TAACTCCTTATATGTTTCTTGATCTCCTTGATTTGCGTATTTATTTAATTATGCTGGAATTGTGAGCACTATGAGTATGA TAGAGGATTTTTTTTTATCTTTTATGCAGGAACCAATAACCCTTCTTGAGTACTCAATGAACGCAGTCACCGAAGGCATT GATGCAATTGCCACTACAAGAGTTGTAATTCGCGGGGAAACAGATCATACATCTACTCATGCCTTGACTGGAGAAACTGT GCATCGAACATTTGGGTAGGGTGAATTCTTCAGCGGATTACTTTAGTTCTTTCTAATGATCCAGGGACATTATGTTTTTT ATTTTATTTTTTAATAGTGGGAGCGGAGCAGGAATGGATGTTGTTGTTTCCAGTGTCAAGGCCTACGTTGCTGCAATAAA CAAGATGCTAGGTTTCAAGGATACATCTCCATCTACTGAAAAAATCCCAGTTTCTGCATCAAAGGTTTGATTGATGCCTA CTACTATGGTCACAGTTGATTCATCGATACTTTATTTTAGTACAGTGTAATTCATGGATCCTACAAGGATTATGTCCCTT TTCATTTGAGGGTGTCCACTATTGGAAGTTATAAATGTGCTTTTTTTGCTATTTTTCTTTTGACGAAGTGAAATCATGGT CATCTTAAGGTTTCGCCTCAGGGCTGAGTTTGTAAGGTGCAGAAGCTAAATTAAATGAGGAATGGCTTTAGAAAGAAATA GCTTAGATAATTTCTTCTGATGCCATTTTTCCTTGTTTTCAAAGCCATGCCTGAGCTTCTTGGGTGTGTCAAATTTCTTT GGGTCAAGCAGTAGGTGTTGAAAAACTTGTGAATCTACGAGTACGGAGAGGATGAATTTAATCATTCTCAACTACTACCA AATTCCTTCTTCATTTCATCAAAATAGCAGTCCTAATATGCACAATTCTATGTGCTGCCGGTGCCGATGTGCTTCCTACC AGCACCATCTGTCTTGGATGAACTTATTTATTGATTGCTGCTCTCATAAACGTATGAACTTATTTATTGATAGGCAAACT AAGGCAACGGATGCACACCTTTTTTTTAATTCTCATTTTGACGAGTTTATTGTTTTTTCACACCAATATACTACTTATCT TTCTTCCCATATACCAAAAAATAAATATACTTATCTCATAAATAGATCGCTTATTCGAAAAGTTTGTTAAAATTTTAAAG TATAGACCAATCATAATAAATATATTAAATAGTGTATATGAAGGATTGTTGACAACTTTGCT
CDS sequence (LotjaGi5g1v0362600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCAACGCGATACGCACCCCCGTCGTCTCTCCTTCCACCTCCACCTGCTTTCCCTCTTCCCCCAACCACCGCGT CCTCCTCCGCCTCCACTTCCCCCAATCCTCTAAACAACACCGCTATTGCTCCTCCTCTTCTTATCCCAAATTCACCGTTT CCTGCTCCCAATTCCAACCTGAAACCACTCGCCGGCGTCCTCCTTACATCCCGAACCACATCCCTGACCCTTCCTATGTT CGCATCTTCGACACCACCCTCCGCGACGGCGAGCAGTCCCCCGGCGCCTCCATGACCTCCAAGGAGAAGCTCGACATTGC CCGCCAGCTTGCCAAGCTCGGCGTTGACATCATCGAGGCCGGCTTCCCTGCCGCCTCCAAGGACGACTTCGAGGCAGTCA AAATGATCGCGCAGGAGGTTGGAAACGCCGTCGATGACGAAGGCTACGTTCCCGTCATCTGTGGCCTCTCCAGGTGTAAT GAGAAGGATATTCGAACCGCTTGGGATGCCGTTAAGCACGCGAAGAGGCCCAGGATTCATACCTTCATTGCTACCAGTGG CATTCACATGGAGTACAAGCTCAGAATGTCTAAAGAACAGGTCATTGACAAAGCCCGCAGTATGGTCAAGTTCGCCCGCA GTTTGGGCTGCAATGACGTCGAGTTCAGTCCTGAAGATGCTGGCAGATCGGAGAGGGAGTTTCTTTATGAAATTCTAGCA GAAGTTATCAAGGCTGGGGCCACAACCCTTAATATACCGGACACTGTTGGCATAACGATGCCGAGTGAGTTTGGGAAACT GATTGCTGATATCAAAGCTAATACCCCTGGAGCAGAAAATGTTGTTATTTCCACCCATTGTCAGAATGATCTTGGGCTTT CTACCGCAAACACTATAGAGGGTGCACATGCTGGTGCAAGGCAACTGGAAGTAACAATTAATGGGATCGGTGAAAGGGCT GGAAATGCCTCATTAGAAGAGGTTGTGATGGCCCTAAAATGCGGAGGACATGTCTTTGGCAATCTGTACACTGGCGTTAA TGCAAAGCACATCTACCTGACAAGCAGGATGGTCGAAGAGTACTCTGGTTTGCAGTTACAACCGCACAAGGCCCTTGTAG GAGCTAATGCCTTCGCTCATGAAAGTGGCATTCATCAGGACGGAATGTTAAAACACAAAGGTACATATGAAATAATATCT CCTGAGGACATTGGCCTTGAAAGATCCAATGAAGCTGGTATTGTACTGGGAAAGCTTAGTGGACGGCATGCTTTGAGAAA GCGACTTCAAGAGCTTGGTTATGAACTTAAAGATGACCAAGTTGAGAGTTTATTTTGGCGTTTCAAAGCAGTTGCTGAGC AAAAAAAGAGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTCTTTCAGGCAGAGCCTGTTTGGAAACTT GGTGATTTGCAGGTGACTTGTGGAACTCTTGGTCTTTCAACTGCAACTGTTAAACTTGTTAGTGATGATGGTAGCACGCA TGTTGCTTGTGCCATTGGTACAGGACCAGTGGATTCGGCTTACAAGGCTGTTGATCTAATAGTAAAGGAACCAATAACCC TTCTTGAGTACTCAATGAACGCAGTCACCGAAGGCATTGATGCAATTGCCACTACAAGAGTTGTAATTCGCGGGGAAACA GATCATACATCTACTCATGCCTTGACTGGAGAAACTGTGCATCGAACATTTGGTGGGAGCGGAGCAGGAATGGATGTTGT TGTTTCCAGTGTCAAGGCCTACGTTGCTGCAATAAACAAGATGCTAGGTTTCAAGGATACATCTCCATCTACTGAAAAAA TCCCAGTTTCTGCATCAAAGGTTTGA
Protein sequence (LotjaGi5g1v0362600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAANAIRTPVVSPSTSTCFPSSPNHRVLLRLHFPQSSKQHRYCSSSSYPKFTVSCSQFQPETTRRRPPYIPNHIPDPSYV RIFDTTLRDGEQSPGASMTSKEKLDIARQLAKLGVDIIEAGFPAASKDDFEAVKMIAQEVGNAVDDEGYVPVICGLSRCN EKDIRTAWDAVKHAKRPRIHTFIATSGIHMEYKLRMSKEQVIDKARSMVKFARSLGCNDVEFSPEDAGRSEREFLYEILA EVIKAGATTLNIPDTVGITMPSEFGKLIADIKANTPGAENVVISTHCQNDLGLSTANTIEGAHAGARQLEVTINGIGERA GNASLEEVVMALKCGGHVFGNLYTGVNAKHIYLTSRMVEEYSGLQLQPHKALVGANAFAHESGIHQDGMLKHKGTYEIIS PEDIGLERSNEAGIVLGKLSGRHALRKRLQELGYELKDDQVESLFWRFKAVAEQKKRVTDADLRALVSDEVFQAEPVWKL GDLQVTCGTLGLSTATVKLVSDDGSTHVACAIGTGPVDSAYKAVDLIVKEPITLLEYSMNAVTEGIDAIATTRVVIRGET DHTSTHALTGETVHRTFGGSGAGMDVVVSSVKAYVAAINKMLGFKDTSPSTEKIPVSASKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 612 | 578 | 0.0 | – | |
| PANTHER | 35 | 612 | 578 | 0.0 | – | |
| Hamap | 77 | 611 | 535 | 39.088 | ||
| SUPERFAMILY | 77 | 376 | 300 | 3.11E-88 | – | |
| Gene3D | 77 | 361 | 285 | 2.2E-106 | ||
| TIGRFAM | 80 | 599 | 520 | 1.7E-194 | ||
| ProSiteProfiles | 80 | 352 | 273 | 41.169 | ||
| Pfam | 80 | 358 | 279 | 1.4E-92 | ||
| CDD | 82 | 360 | 279 | 1.98813E-177 | – | |
| ProSitePatterns | 87 | 103 | 17 | - | ||
| Gene3D | 365 | 480 | 116 | 1.3E-37 | – | |
| SMART | 457 | 602 | 146 | 1.6E-27 | ||
| Pfam | 458 | 602 | 145 | 5.2E-38 | ||
| Gene3D | 488 | 602 | 115 | 5.0E-6 | ||
| SUPERFAMILY | 489 | 601 | 113 | 2.22E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 2-isopropylmalate synthase activity | Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+). | ||
| Biological process | Leucine biosynthetic process | The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | Transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer. |
Expression pattern of LotjaGi5g1v0362600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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