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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0363500 |
| Transcript ID | LotjaGi5g1v0363500.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Inositol transporter 1; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|I1NJB7|I1NJB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0363500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67833593..67837522) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAATTCTTGTGAAATGAAACAATAGCATTTAATATGTAGAGTTGAAAGGAAATAGCAAAAAAAGATAAGAGCGAGTC ATGTGGTGGTGGTGGAGCTATCTGCCGAGTCAGACGATAAGCACATTTGCAGCTTATGATCCAAATAATGAATAATTGAA TTGAATCTGATCCATCCATGTAAGCTAAAGCAGAACAAGCTAATAGTAGTTAATTTCCTTTCCTAAGTAAGCAAGTTGCA GTGGCCAGTTGGGATCACCACACAACAGAACAGTTGACCCTCCTGCTCTGTTATTGTTGTTCTTTCTGTTTCTGCTGCTT AATTAATTCATCATTCAACATATTCACCATGACGATTAGTACTACTACTACTACTACTGTACCGTCGTCCATGCCAGGAA GCTCAGGGTATTTGGAGATGTACCCTCAGAGGAAAATTTCCCTCTTCAAGAATCCTTACATTTTGGGCCTCACTGCTGTC GCTAGCATTGGTGGACTCCTCTTTGGCTACGACACAGGTGTTATCTCGGGAGCCCTTCTCTATATCAAAGATGATTTTCA GGAGGTCAGAGACAGTTATTTTCTACAGGTACGTTCAATACTTTTCCCCCTCTTTCAATCTTAACAATGTACTTTACTTT ATTTTAATCAGTGTATTCAATTCAAAGGAACTAGTTTTCATATTTGATATGGTCACGGTCACACTCACACACAACCTAAC CTCACTACAAAATGGAATTTGTTGTGGAGAAGTAGCTAGGGTGATCTCACTATAATTTTTTTCTCACTGGATTTTCTAAT TGTTTAAGTTGGCAGGAAACAATTGTCAGCATGGCAGTGGCTGGTGCAATTGTTGGGGCAGCAGCAGGTGGTTGGATAAA TGATGCTTATGGAAGAAAGAAGGCAACCATCATTGCAGATGTTATCTTTGCACTGGGAGCAATTGTCATGGCTGCTGCAC CAGATCCTTATATTCTCATAGTTGGCCGTCTTTTGGTTGGTTTCGGTGTTGGTATAGCTTCTGTTACTGCTCCTGTGTAT ATTGCAGAGCTGTCACCATCAGAAATAAGGGGGAGCTTAGTAAGCACTAATGTGCTTATGATCACTGGAGGACAGTTTCT TTCCTATCTCATAAATCTTGCTTTTACACAGGTCAATTTTCCATATTTGTTTTTATATTAAATAGAGCATTGTTTTGTAT CACGTTAAATAAGTTGCTGAACACTAAGGCTGCATTTGGGGTTAACAACTTAATTAAGTGCTTATTTATAAGTTTATTTG AAAAACTAGTTGAAATATGCTCAGAATAGTTTATTGGTAGATATAAACGTTTACTCATTAGCGGATTCGAGCAGCTTACG AAAATAGGTCCAAAACAGCTTATAGGTAGGTCATAAGTTATTTTCGTAAGCTTATCCCAACACTTGCATAAGTGTTTATG ATGTAAGATAAACTTAAATTAGTTATTTCAAACGCAGACTAATTATGTCTTGTTTCCTAAATTATATAGACCTCTTATTT GAAATGGTAAAGTTCAGTTTCTCTCATGTGGTTTGGCATGTTATCCTTGTTCCACCTTGTGACGTGAACTTTATACCACA CTTCCTTTCACTTTCTCTATTCTCACATATCTAGTGTTTCTTTTTCTCGCCCCCTCATGATTTGGCATGTTTTCATTAAT CTGCCTAGCAATGTGAACTTTATTACTCTTCATTTCACTTTGCTTCAATTTCACATAACAGTTGTCTCTTTTTCCTGCCT CCATCCATTTTCTAATGGAATCAATAGATGAACATCTCTTGCAATCTAACTTACTGAAAAAAGGGCAAAGAAATACATAG TTAAATATGGGATTATGCTACCTTTTCAAGGTCAAGGGTGTTATTCCGCTGACCCCTCACATTCTTAATCAAGCAGGTCC CCGGAACATGGCGATGGATGCTGGGAGTTTCAGGTTTGCCTGCAGTAGTTCAGTTTTTCCTCATGCTCTTACTGCCTGAA TCCCCCAGATGGCTCTTTATAAAGGTCACAGAATTTTCATAAGCTTACCTTCAAAGTCTATTTTCTTTAATATAATTTTT TCCTACTTGTTCAGAATAGGGAAGATGAAGCTATTGCCGTGCTTACTAGGATCTATGACTTTGATCGTTTAGAGGATGAA GTTTCCTCAATTACAACTCAGTTAGAGCAAGACCCCCAAAAAAGGGATGATATCAGATATTTGGATGTTTTTAAATCAAA AGAAATCAGGCTTGCATTCCTTGCTGGAGGTGGATTGCAGGTAAGAAAAAGTTCACTTGGGATATCATTGTTGGGAAAAT AACTTCTCTCTTGCTATTAAAGGATTGATTTGCATAAATATTCTTTTCGTAAACAAGCCATGGTGGCACTGCAAAACTGG ATTTCACAACATTACCCTAAAAAACAACTTTTTCATCAATGTATCAGACATAAATAACTTCACTTTCGCCATAATCAATT TTGCCAAAACCAATTTTATCCAAAATCAATTGTGACAAATGATCAAACATGTAAGAAATGTGTTACTTATAGCATCCCAT TTTGTCTGTGAAGGCTTTTCAGCAATTCACAGGTATAAACACAGTGATGTACTACAGCCCCACCATTGTCCAAATGGCTG GCTTCCACTCTAATGAGTTGGCTCTTCTCCTCTCTCTCATAATTGCCGGCATGAATGCCACCGGAACAATTCTCGGCATA TACCTTATTGACCATGCAGGGAGGAAGAAACTAGCTCTATATAGCTTAGGAGGAGTAATAGCATCTCTGATCATCCTCTC CTTTTCATTCTTTAACCAATCATCTGCAAATGGTTTGTATGGATGGTTTGCAGTTTTAGGTTTGGCCCTATATATCTCGT TCTTCTCACCGGGGATGGGGACAGTGCCATGGACAGTAAACTCAGAGATATATCCTCAAAAATACAGAGGAATGTGTGGA GGCATGTCAGCTACTGTGAATTGGGTTTCAAACTTGATTGTGGCTCAGTCGTTTCTGTCACTTGCTGGTGCTGCAGGGGC TGGTTTTACTTTCTTGCTTCTTGCTGTTATAGCTGTGCTTGCCTTTCTTTTTGTGGTTTTGTATGTTCCTGAGACCAAAG GTTTGACATTTGATGAAGTGGAGCTGTTATGGAAGGAGAGAGCTTGGGGCAAGAATCCTGAAACTCTAAGCCTTCTTCAG TCCTAGGAATATATCCAAACCTTAAATACAGTGCACTGTATATGTATGTTGTTAATTATGCTGTGATTGATTGTTGATGA GAGGTAAGCACAGTTAAGAAAGCACAAGAGTGAGAGAGTGACCACCATAAATCCAAAACACACACTATTTTTTGTTTTAC AAATGATCTTTTGGGCACTTAGCTTGAAGTTGGAGACAAGAAGTTGGCATTCAAACTTTTGCTTGTGTTGCAAGTTTGCA ACATGAACATTCTATTTTTATAGTTGATTCATATTTTTTTTTTCTTCCAATTCCAACATAAGTGAAAAAGGGTTCTTTAC AGTTTACACAATTTCTTCAGAATCTGTGAAGTTATTTCATTTCATCCATTTTGTTATGTGTATGACAGGTTCCTTTTGTA AGCATGACTCAGAAAGCTTAATTGACTAATGGAATTCTTAACTAAATTTAAAACTCGTTGTAATCTATATTCATGATGGG GATAGAAACACGTGTTCCTCTTCCTATGGTGTGAATAGATTTGGTTTCGTCAAACTCGTGCTGATACTGTATTATAATCC AATTCCATCAAAATACAGGGAACTTTATTTTCATTAATCTTTTGAGATAAACATCTGAGTAGATAAATCTTTAGATGCGT GATGCAATTTGATGTGAAAGAAAACTACGGATTATTTTCATTAAATAAAAAAAGGAGATAAACATTTGAGCAGATAAATC TTTATTTTCC
CDS sequence (LotjaGi5g1v0363500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTACAGCCCCACCATTGTCCAAATGGCTGGCTTCCACTCTAATGAGTTGGCTCTTCTCCTCTCTCTCATAATTGC CGGCATGAATGCCACCGGAACAATTCTCGGCATATACCTTATTGACCATGCAGGGAGGAAGAAACTAGCTCTATATAGCT TAGGAGGAGTAATAGCATCTCTGATCATCCTCTCCTTTTCATTCTTTAACCAATCATCTGCAAATGGTTTGTATGGATGG TTTGCAGTTTTAGGTTTGGCCCTATATATCTCGTTCTTCTCACCGGGGATGGGGACAGTGCCATGGACAGTAAACTCAGA GATATATCCTCAAAAATACAGAGGAATGTGTGGAGGCATGTCAGCTACTGTGAATTGGGTTTCAAACTTGATTGTGGCTC AGTCGTTTCTGTCACTTGCTGGTGCTGCAGGGGCTGGTTTTACTTTCTTGCTTCTTGCTGTTATAGCTGTGCTTGCCTTT CTTTTTGTGGTTTTGTATGTTCCTGAGACCAAAGGTTTGACATTTGATGAAGTGGAGCTGTTATGGAAGGAGAGAGCTTG GGGCAAGAATCCTGAAACTCTAAGCCTTCTTCAGTCCTAG
Protein sequence (LotjaGi5g1v0363500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYYSPTIVQMAGFHSNELALLLSLIIAGMNATGTILGIYLIDHAGRKKLALYSLGGVIASLIILSFSFFNQSSANGLYGW FAVLGLALYISFFSPGMGTVPWTVNSEIYPQKYRGMCGGMSATVNWVSNLIVAQSFLSLAGAAGAGFTFLLLAVIAVLAF LFVVLYVPETKGLTFDEVELLWKERAWGKNPETLSLLQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 179 | 179 | 7.46E-23 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| CDD | 1 | 169 | 169 | 2.39672E-59 | – | |
| Gene3D | 1 | 188 | 188 | 4.8E-50 | – | |
| Pfam | 1 | 182 | 182 | 3.8E-40 | ||
| ProSiteProfiles | 1 | 171 | 171 | 21.31 | ||
| PANTHER | 2 | 198 | 197 | 1.4E-92 | – | |
| PANTHER | 2 | 198 | 197 | 1.4E-92 | – | |
| TMHMM | 19 | 41 | 23 | - | – | |
| Phobius | 20 | 42 | 23 | - | – | |
| ProSitePatterns | 37 | 53 | 17 | - | ||
| Phobius | 43 | 48 | 6 | - | – | |
| Phobius | 49 | 69 | 21 | - | – | |
| TMHMM | 51 | 70 | 20 | - | – | |
| Phobius | 70 | 80 | 11 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 81 | 104 | 24 | - | – | |
| Phobius | 105 | 115 | 11 | - | – | |
| Phobius | 116 | 137 | 22 | - | – | |
| Phobius | 138 | 142 | 5 | - | – | |
| Phobius | 143 | 167 | 25 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 168 | 199 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0363500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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