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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0363500 |
| Transcript ID | LotjaGi5g1v0363500.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|V7BAL0|V7BAL0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0363500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67833593..67837522) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAATTCTTGTGAAATGAAACAATAGCATTTAATATGTAGAGTTGAAAGGAAATAGCAAAAAAAGATAAGAGCGAGTC ATGTGGTGGTGGTGGAGCTATCTGCCGAGTCAGACGATAAGCACATTTGCAGCTTATGATCCAAATAATGAATAATTGAA TTGAATCTGATCCATCCATGTAAGCTAAAGCAGAACAAGCTAATAGTAGTTAATTTCCTTTCCTAAGTAAGCAAGTTGCA GTGGCCAGTTGGGATCACCACACAACAGAACAGTTGACCCTCCTGCTCTGTTATTGTTGTTCTTTCTGTTTCTGCTGCTT AATTAATTCATCATTCAACATATTCACCATGACGATTAGTACTACTACTACTACTACTGTACCGTCGTCCATGCCAGGAA GCTCAGGGTATTTGGAGATGTACCCTCAGAGGAAAATTTCCCTCTTCAAGAATCCTTACATTTTGGGCCTCACTGCTGTC GCTAGCATTGGTGGACTCCTCTTTGGCTACGACACAGGTGTTATCTCGGGAGCCCTTCTCTATATCAAAGATGATTTTCA GGAGGTCAGAGACAGTTATTTTCTACAGGTACGTTCAATACTTTTCCCCCTCTTTCAATCTTAACAATGTACTTTACTTT ATTTTAATCAGTGTATTCAATTCAAAGGAACTAGTTTTCATATTTGATATGGTCACGGTCACACTCACACACAACCTAAC CTCACTACAAAATGGAATTTGTTGTGGAGAAGTAGCTAGGGTGATCTCACTATAATTTTTTTCTCACTGGATTTTCTAAT TGTTTAAGTTGGCAGGAAACAATTGTCAGCATGGCAGTGGCTGGTGCAATTGTTGGGGCAGCAGCAGGTGGTTGGATAAA TGATGCTTATGGAAGAAAGAAGGCAACCATCATTGCAGATGTTATCTTTGCACTGGGAGCAATTGTCATGGCTGCTGCAC CAGATCCTTATATTCTCATAGTTGGCCGTCTTTTGGTTGGTTTCGGTGTTGGTATAGCTTCTGTTACTGCTCCTGTGTAT ATTGCAGAGCTGTCACCATCAGAAATAAGGGGGAGCTTAGTAAGCACTAATGTGCTTATGATCACTGGAGGACAGTTTCT TTCCTATCTCATAAATCTTGCTTTTACACAGGTCAATTTTCCATATTTGTTTTTATATTAAATAGAGCATTGTTTTGTAT CACGTTAAATAAGTTGCTGAACACTAAGGCTGCATTTGGGGTTAACAACTTAATTAAGTGCTTATTTATAAGTTTATTTG AAAAACTAGTTGAAATATGCTCAGAATAGTTTATTGGTAGATATAAACGTTTACTCATTAGCGGATTCGAGCAGCTTACG AAAATAGGTCCAAAACAGCTTATAGGTAGGTCATAAGTTATTTTCGTAAGCTTATCCCAACACTTGCATAAGTGTTTATG ATGTAAGATAAACTTAAATTAGTTATTTCAAACGCAGACTAATTATGTCTTGTTTCCTAAATTATATAGACCTCTTATTT GAAATGGTAAAGTTCAGTTTCTCTCATGTGGTTTGGCATGTTATCCTTGTTCCACCTTGTGACGTGAACTTTATACCACA CTTCCTTTCACTTTCTCTATTCTCACATATCTAGTGTTTCTTTTTCTCGCCCCCTCATGATTTGGCATGTTTTCATTAAT CTGCCTAGCAATGTGAACTTTATTACTCTTCATTTCACTTTGCTTCAATTTCACATAACAGTTGTCTCTTTTTCCTGCCT CCATCCATTTTCTAATGGAATCAATAGATGAACATCTCTTGCAATCTAACTTACTGAAAAAAGGGCAAAGAAATACATAG TTAAATATGGGATTATGCTACCTTTTCAAGGTCAAGGGTGTTATTCCGCTGACCCCTCACATTCTTAATCAAGCAGGTCC CCGGAACATGGCGATGGATGCTGGGAGTTTCAGGTTTGCCTGCAGTAGTTCAGTTTTTCCTCATGCTCTTACTGCCTGAA TCCCCCAGATGGCTCTTTATAAAGGTCACAGAATTTTCATAAGCTTACCTTCAAAGTCTATTTTCTTTAATATAATTTTT TCCTACTTGTTCAGAATAGGGAAGATGAAGCTATTGCCGTGCTTACTAGGATCTATGACTTTGATCGTTTAGAGGATGAA GTTTCCTCAATTACAACTCAGTTAGAGCAAGACCCCCAAAAAAGGGATGATATCAGATATTTGGATGTTTTTAAATCAAA AGAAATCAGGCTTGCATTCCTTGCTGGAGGTGGATTGCAGGTAAGAAAAAGTTCACTTGGGATATCATTGTTGGGAAAAT AACTTCTCTCTTGCTATTAAAGGATTGATTTGCATAAATATTCTTTTCGTAAACAAGCCATGGTGGCACTGCAAAACTGG ATTTCACAACATTACCCTAAAAAACAACTTTTTCATCAATGTATCAGACATAAATAACTTCACTTTCGCCATAATCAATT TTGCCAAAACCAATTTTATCCAAAATCAATTGTGACAAATGATCAAACATGTAAGAAATGTGTTACTTATAGCATCCCAT TTTGTCTGTGAAGGCTTTTCAGCAATTCACAGGTATAAACACAGTGATGTACTACAGCCCCACCATTGTCCAAATGGCTG GCTTCCACTCTAATGAGTTGGCTCTTCTCCTCTCTCTCATAATTGCCGGCATGAATGCCACCGGAACAATTCTCGGCATA TACCTTATTGACCATGCAGGGAGGAAGAAACTAGCTCTATATAGCTTAGGAGGAGTAATAGCATCTCTGATCATCCTCTC CTTTTCATTCTTTAACCAATCATCTGCAAATGGTTTGTATGGATGGTTTGCAGTTTTAGGTTTGGCCCTATATATCTCGT TCTTCTCACCGGGGATGGGGACAGTGCCATGGACAGTAAACTCAGAGATATATCCTCAAAAATACAGAGGAATGTGTGGA GGCATGTCAGCTACTGTGAATTGGGTTTCAAACTTGATTGTGGCTCAGTCGTTTCTGTCACTTGCTGGTGCTGCAGGGGC TGGTTTTACTTTCTTGCTTCTTGCTGTTATAGCTGTGCTTGCCTTTCTTTTTGTGGTTTTGTATGTTCCTGAGACCAAAG GTTTGACATTTGATGAAGTGGAGCTGTTATGGAAGGAGAGAGCTTGGGGCAAGAATCCTGAAACTCTAAGCCTTCTTCAG TCCTAGGAATATATCCAAACCTTAAATACAGTGCACTGTATATGTATGTTGTTAATTATGCTGTGATTGATTGTTGATGA GAGGTAAGCACAGTTAAGAAAGCACAAGAGTGAGAGAGTGACCACCATAAATCCAAAACACACACTATTTTTTGTTTTAC AAATGATCTTTTGGGCACTTAGCTTGAAGTTGGAGACAAGAAGTTGGCATTCAAACTTTTGCTTGTGTTGCAAGTTTGCA ACATGAACATTCTATTTTTATAGTTGATTCATATTTTTTTTTTCTTCCAATTCCAACATAAGTGAAAAAGGGTTCTTTAC AGTTTACACAATTTCTTCAGAATCTGTGAAGTTATTTCATTTCATCCATTTTGTTATGTGTATGACAGGTTCCTTTTGTA AGCATGACTCAGAAAGCTTAATTGACTAATGGAATTCTTAACTAAATTTAAAACTCGTTGTAATCTATATTCATGATGGG GATAGAAACACGTGTTCCTCTTCCTATGGTGTGAATAGATTTGGTTTCGTCAAACTCGTGCTGATACTGTATTATAATCC AATTCCATCAAAATACAGGGAACTTTATTTTCATTAATCTTTTGAGATAAACATCTGAGTAGATAAATCTTTAGATGCGT GATGCAATTTGATGTGAAAGAAAACTACGGATTATTTTCATTAAATAAAAAAAGGAGATAAACATTTGAGCAGATAAATC TTTATTTTCC
CDS sequence (LotjaGi5g1v0363500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATTAGTACTACTACTACTACTACTGTACCGTCGTCCATGCCAGGAAGCTCAGGGTATTTGGAGATGTACCCTCA GAGGAAAATTTCCCTCTTCAAGAATCCTTACATTTTGGGCCTCACTGCTGTCGCTAGCATTGGTGGACTCCTCTTTGGCT ACGACACAGGTGTTATCTCGGGAGCCCTTCTCTATATCAAAGATGATTTTCAGGAGGTCAGAGACAGTTATTTTCTACAG GAAACAATTGTCAGCATGGCAGTGGCTGGTGCAATTGTTGGGGCAGCAGCAGGTGGTTGGATAAATGATGCTTATGGAAG AAAGAAGGCAACCATCATTGCAGATGTTATCTTTGCACTGGGAGCAATTGTCATGGCTGCTGCACCAGATCCTTATATTC TCATAGTTGGCCGTCTTTTGGTTGGTTTCGGTGTTGGTATAGCTTCTGTTACTGCTCCTGTGTATATTGCAGAGCTGTCA CCATCAGAAATAAGGGGGAGCTTAGTAAGCACTAATGTGCTTATGATCACTGGAGGACAGTTTCTTTCCTATCTCATAAA TCTTGCTTTTACACAGGTCCCCGGAACATGGCGATGGATGCTGGGAGTTTCAGAATAG
Protein sequence (LotjaGi5g1v0363500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTISTTTTTTVPSSMPGSSGYLEMYPQRKISLFKNPYILGLTAVASIGGLLFGYDTGVISGALLYIKDDFQEVRDSYFLQ ETIVSMAVAGAIVGAAAGGWINDAYGRKKATIIADVIFALGAIVMAAAPDPYILIVGRLLVGFGVGIASVTAPVYIAELS PSEIRGSLVSTNVLMITGGQFLSYLINLAFTQVPGTWRWMLGVSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 12 | 204 | 193 | 7.6E-110 | – | |
| PANTHER | 12 | 204 | 193 | 7.6E-110 | – | |
| Gene3D | 31 | 204 | 174 | 2.3E-47 | – | |
| SUPERFAMILY | 34 | 203 | 170 | 6.41E-32 | ||
| Phobius | 37 | 66 | 30 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| ProSiteProfiles | 41 | 205 | 165 | 34.624 | ||
| Pfam | 42 | 204 | 163 | 7.2E-45 | ||
| CDD | 44 | 204 | 161 | 1.33068E-75 | – | |
| PRINTS | 49 | 59 | 11 | 3.1E-12 | ||
| Phobius | 67 | 77 | 11 | - | – | |
| Phobius | 78 | 100 | 23 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 101 | 111 | 11 | - | – | |
| TMHMM | 110 | 129 | 20 | - | – | |
| Phobius | 112 | 129 | 18 | - | – | |
| Phobius | 130 | 134 | 5 | - | – | |
| TMHMM | 134 | 156 | 23 | - | – | |
| Phobius | 135 | 156 | 22 | - | – | |
| PRINTS | 135 | 154 | 20 | 3.1E-12 | ||
| ProSitePatterns | 140 | 165 | 26 | - | ||
| Phobius | 157 | 167 | 11 | - | – | |
| Phobius | 168 | 190 | 23 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 191 | 205 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0363500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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