Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0005900 |
| Transcript ID | LotjaGi6g1v0005900.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1214104..1218621) extracted from Lotus japonicus Gifu genome v1.2.
TTATTCTTCATGCATTCCTTCCTTCTCTGCACAGTGAGTCTCCCTTTCTGTTTTTGTGATTTTTAAAACGCACTCTTCTC TTCCTTCAACCAACCGAATATATTCTCTTCCTTCAAGTTCACCTGCCACCACTCGTTTCCAATAGCTCACAAGAACCACA AGGGGCCCCTCAAAAGATTGCATATCTAAACCAAAGGATTGATTCCATTGTTCCCTTGAGTTGAAGTTATAACCTTGTTT TCAAAGTGATGATGCCTCTTATAAAACACTCAACAACATCATCAACCAAAGGTTCTTTATTATACTTTGCTCTTTTCTTA ATTCCTCTTGCCTTTTCTTTTTCCTTGCTTGTTAGTTTATCTTTGAGGATTGATTGGTATCATTTTTGGGTCAGAGCCAT TGTCATGGAACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGC TTTCAGAGACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAG GCACCAATTAAGATATGTGGTATGTATTTGCTAACTCCCATGTTCTGTTTTACTTTTAGAATTCACTTCTTAGTTTCTTG CTCAATTTTTAAGTATATGGCAATTGGTTTTTTATGATGTTTCTGATGATGTTAATGAGTTTTACATCCAGTTTTAAGTT TCATAGAACATAATCTAGTCTAAGGTTGGGTTAAATTATACCAAAATGGAACAACAATTAAATGAACATCCAGTCTTTAT TCTAATTTGAATAAGAAGAATGGTGTTTCTAATGGTTTCTCCTAATGTTTTTATTGGGTGAAATTTTTCTTTTGTTTTCT TTTTTGAAACTTAGGAGGGTATTTAATTACTGAAGTGAAGATGAAACTGAGAAGATAGGAAGCATTAATTGGCTAAACAT GAATGTTGTAGGAACTAGGATATTACAGTGATTGCAGAGGATTACTATGTTTATTCTAATTAGAAGATCTAGTTTCCAAG ACAACCTCTAAGAAATGGGGATACCTTACCATGAGTTGCATTTTATATTTTTGGGAAAGTTGATTTGCTCTTCTCATTCT TGATTGTTGTACATGTTTTGAATCATCCACTTTAGTTTACTTGATTGTTGCAGAAAACTATTGTCAGCTAAATAGAATTT CGAGATAAACTTTTTAGTTGATCATAATTTGTGTGAAATTTATATTTTAAGGTATTTTTTGAGATATGAATTCAAATCTT TATAAATTTCAATTATGAATGTGAGAATTTTTAATCTAAACTTGTATTCACTATGTTATGTAGATATCATATTGCTTTTG TCTCGTATAAAAAACAAAAGGTTTTATTAATATAAAGTAGGAACTAGTATCATTCTTGATTCAATTCAATATGTTACCAG GAGATATCCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGTTCCAATTACTTGTTT CTAGGCGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAAAATAAAATATCCAGA AAATTTTTTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATGATGAATGTAAAAGGA GATTCAATGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATCATTGAAGATAAGATC CTGTGCATGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACGTCCAGCAGAAGTTCC AGAAACTGGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAATGAGTGAACGTGGAG TTTCATATACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATTTGTAGAGCGCACCAG GTTACTCATAAACTTTATAAGTGTACGGTAGAAAAACACGGTGAAGTTAAAATCACGCTAGACAGAAGGAAAAGCTAAAG GAAGTTGTTTTTCCTCACCATGATTTAGACACGCCGTGATTTTCTTATAGTGTATAGAAACATGCCTGACGTCTTAATAT GGAATTATATGACAAGAGTTTAAGTATATGACTCATGAACCAACTATCCTAAACATTTAAATTGTTGGAAAAAGAACACA TGAATTATTTTATATTATATTTCTAACATGACCTCCCACGCAAGAGCTCATTCGGCTTGAAGCATGGACAATGCATACAC TACCTTATGCTGAAATTCAACTTTTTATTATATTTGTAGGAAACAAGAATCAAACTCTACATTACTTATAAAAACTCTAA TACCATGTCAAAACCCAACTACTTTAAAATCTTAAGTTGTTGGGTGAAGGACATGTGAATATTTACATTATATTTCTAAC AATATTTATTACTTCTGATAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGC TCCTAATTACTGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATAT TAAGGCCTGTGGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCTAGTACTCCAAAAGAATCT TGGTATTTTTAGTTCTTGAATCCAGAATTTTGACATGTTCAGTAAATGGTTATATGATATTTTGGTAGTTTCATATTATT GCAAACTCCACATAGGGTGTGATTACCTACTAGCATTACTTAATTCAGGAAAAAAATGTGTTGGCTCTCAATTTTCAGTA GGGAACTGTCTAATACTCTAATTAGGGACCAATACTCAATGGTAGAGAATACAAGCATGGATCAAAACCCAAATCAATGA AAAGAGTAGGGACTAAAATCTATTTTAAACAAAGAAAGGAAGTTTGTGCAAGTAGAGGAATACTTCATTAGCTAAAGTGA TTTGGCATATGATAAAAGCTTAAAAAAATGAGTTAGAAAGCATATTAGCCTTGCTGTCAACTTTTGTTAAATTATTTATC AGATAAATTTTGTTGTTATAAATTATTCTTTGCCAACCTGTAGAAAAGATTTACTGCTGAAATCTGAGAATTATTCTTTG CCAGCCTATAGAAAGATTTAAGAAAAGCAGAAAGCATAAACATAGCAGCAAATTAATTTAGCTTAGATATAAAAGAAAAG CACATTATGGTGCAAACTCCCTGCACACGACATTTATTTGTTTGACATCAAATTCTTCTGGACATGCTAGCTTTGCCGTA CATTTAATAGCTTAGTGATCCTTTATGTAGAAGGCATCTTAAATTATCATTTTGGATGCTTCTAATATTTATACAATTGG TATTTAGCTCATTAAGTATTCCTGAGTCTGATGTTCCAAAATCTTTGATTAAGCATTGTTATATATTGTAGCTATGAATA ACTTATTAGCTTTTGTGGAAGTTTACTTGCATGAATTAATGAGGAAAAAATCATGAGGACATTTTTGTTAAGGTCTCACA CAAACTAGAGGTATGACTCGATACATACTTATAAAAGGTAGAACAATCATTACTTTTGGGCTAGTTTTTAGGTAGTTTGC GTCGCCCAAATTCTAAGATGTATCAAAGCCTATCCTAGAGATACGTTTGGGCTTAATAAGATTGGGGCGAGGAGGTGTCT TAAGGTCTCATATCGACTAGAGATATGAGTATGACTAAATAAGTCCTTGAGTTAGACCTAGCCCGAATTCTAAAACCTTC TTCCGTGTTTATTTATCTTTTTGAATCCGCACTAACTCCTTCTATCTATAACAGTGGTACCATATGTTCTAATATGTTTG CCATCTTTCTTTTGCTTTCCCTATTTCCAGCAGGCATTTCTTGGTGCTAAAGTATGACCTGATTGACCTTACTTAGATCA GCAATGTCTGGAGCATATCTATAATTGACTTGGACAAAGTGATATTCGTGTTCCTTCAATGTGAACAAATATTACAACGG GAAATTTAACTTAACGAACTATGATGAGCAATGGAGAATTATCTCTGCTTCACCTTTCAAGTATAGCTAAATGCTTTTTC TATGCTGCCGGCTCATTCTCACCATGCACAATGCTGCTCAACAAAGATATATTGAGGGCTCAGGGTTCGCTTTTCTTTTC TTTCAGCTTTTGGGGTGAGATACATTTTTATGGATTTGGCTCATAAAGTTAAGGAGTCAGTCATCTTAGAGAGTACAATA AGCTACCATGATAGTTAACTGAGAAATCGATGGTTAAGATTGTAAACATACTGTATGACAACTAATAGTCGTCTTTAATT TAATCTCAACTATTGATTTATCAATTGATGATCTTACTTTAGTTGTGGAAGCAAGTGTGAGTCTTGTGTCCACATTGTGT AAGATAAAGACAATATAAGAGATGTAACATGCACAACA
CDS sequence (LotjaGi6g1v0005900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCCTCTTATAAAACACTCAACAACATCATCAACCAAAGGTTCTTTATTATACTTTGCTCTTTTCTTAATTCCTCT TGCCTTTTCTTTTTCCTTGCTTGTTAGTTTATCTTTGAGGATTGATTGGTATCATTTTTGGGTCAGAGCCATTGTCATGG AACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTCAGAG ACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCACCAAT TAAGATATGTGGAGATATCCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGTTCCA ATTACTTGTTTCTAGGCGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAAAATA AAATATCCAGAAAATTTTTTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATGATGA ATGTAAAAGGAGATTCAATGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATCATTG AAGATAAGATCCTGTGCATGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACGTCCA GCAGAAGTTCCAGAAACTGGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAATGAG TGAACGTGGAGTTTCATATACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATTTGTA GAGCGCACCAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAATTAC TGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATATTAAGGCCTGT GGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGCAGGCATTTCTTGGTGCTAAAGTATGA
Protein sequence (LotjaGi6g1v0005900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMPLIKHSTTSSTKGSLLYFALFLIPLAFSFSLLVSLSLRIDWYHFWVRAIVMEREFLDAIINRLLEVRGRPGKQVQLSE TEIKKLCMVSRDIFLKQPMLLELEAPIKICGDIHGQYADLLRLFEHGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKI KYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKTFSDCFNCLPVAAIIEDKILCMHGGLSPELHSLNQISMLPRP AEVPETGLLCDLLWSDPSKEIQDWGMSERGVSYTFGATRVAEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNY CGEFDNAGAMMSVDDTLMCSFQILRPVDHKRPKFGFGKTTRFKQAFLGAKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 17 | 35 | 19 | - | – | |
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 36 | 40 | 5 | - | – | |
| Phobius | 41 | 371 | 331 | - | – | |
| SUPERFAMILY | 45 | 353 | 309 | 4.59E-118 | – | |
| Gene3D | 50 | 357 | 308 | 5.3E-134 | ||
| PANTHER | 53 | 371 | 319 | 4.3E-209 | – | |
| PANTHER | 53 | 371 | 319 | 4.3E-209 | – | |
| CDD | 57 | 346 | 290 | 0.0 | – | |
| Pfam | 58 | 104 | 47 | 8.2E-22 | ||
| SMART | 78 | 348 | 271 | 6.5E-164 | ||
| Pfam | 106 | 297 | 192 | 6.5E-40 | ||
| PRINTS | 106 | 133 | 28 | 2.0E-94 | ||
| PRINTS | 135 | 162 | 28 | 2.0E-94 | ||
| PRINTS | 168 | 192 | 25 | 2.0E-94 | ||
| ProSitePatterns | 169 | 174 | 6 | - | ||
| PRINTS | 202 | 228 | 27 | 2.0E-94 | ||
| PRINTS | 231 | 258 | 28 | 2.0E-94 | ||
| PRINTS | 288 | 308 | 21 | 2.0E-94 | ||
| PRINTS | 310 | 326 | 17 | 2.0E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0005900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…