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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0005900 |
Transcript ID | LotjaGi6g1v0005900.4 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1214265..1218614) extracted from Lotus japonicus Gifu genome v1.2.
TCATGCATTCCTTCCTTCTCTGCACAGTGAGTCTCCCTTTCTGTTTTTGTGATTTTTAAAACGCACTCTTCTCTTCCTTC AACCAACCGAATATATTCTCTTCCTTCAAGTTCACCTGCCACCACTCGTTTCCAATAGCTCACAAGAACCACAAGGGGCC CCTCAAAAGATTGCATATCTAAACCAAAGGATTGATTCCATTGTTCCCTTGAGTTGAAGTTATAACCTTGTTTTCAAAGT GATGATGCCTCTTATAAAACACTCAACAACATCATCAACCAAAGGTTCTTTATTATACTTTGCTCTTTTCTTAATTCCTC TTGCCTTTTCTTTTTCCTTGCTTGTTAGTTTATCTTTGAGGATTGATTGGTATCATTTTTGGGTCAGAGCCATTGTCATG GAACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTCAGA GACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCACCAA TTAAGATATGTGGTATGTATTTGCTAACTCCCATGTTCTGTTTTACTTTTAGAATTCACTTCTTAGTTTCTTGCTCAATT TTTAAGTATATGGCAATTGGTTTTTTATGATGTTTCTGATGATGTTAATGAGTTTTACATCCAGTTTTAAGTTTCATAGA ACATAATCTAGTCTAAGGTTGGGTTAAATTATACCAAAATGGAACAACAATTAAATGAACATCCAGTCTTTATTCTAATT TGAATAAGAAGAATGGTGTTTCTAATGGTTTCTCCTAATGTTTTTATTGGGTGAAATTTTTCTTTTGTTTTCTTTTTTGA AACTTAGGAGGGTATTTAATTACTGAAGTGAAGATGAAACTGAGAAGATAGGAAGCATTAATTGGCTAAACATGAATGTT GTAGGAACTAGGATATTACAGTGATTGCAGAGGATTACTATGTTTATTCTAATTAGAAGATCTAGTTTCCAAGACAACCT CTAAGAAATGGGGATACCTTACCATGAGTTGCATTTTATATTTTTGGGAAAGTTGATTTGCTCTTCTCATTCTTGATTGT TGTACATGTTTTGAATCATCCACTTTAGTTTACTTGATTGTTGCAGAAAACTATTGTCAGCTAAATAGAATTTCGAGATA AACTTTTTAGTTGATCATAATTTGTGTGAAATTTATATTTTAAGGTATTTTTTGAGATATGAATTCAAATCTTTATAAAT TTCAATTATGAATGTGAGAATTTTTAATCTAAACTTGTATTCACTATGTTATGTAGATATCATATTGCTTTTGTCTCGTA TAAAAAACAAAAGGTTTTATTAATATAAAGTAGGAACTAGTATCATTCTTGATTCAATTCAATATGTTACCAGGAGATAT CCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGTTCCAATTACTTGTTTCTAGGCG ATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAAAATAAAATATCCAGAAAATTTT TTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATGATGAATGTAAAAGGAGATTCAA TGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATCATTGAAGATAAGATCCTGTGCA TGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACGTCCAGCAGAAGTTCCAGAAACT GGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAATGAGTGAACGTGGAGTTTCATA TACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATTTGTAGAGCGCACCAGGTTACTC ATAAACTTTATAAGTGTACGGTAGAAAAACACGGTGAAGTTAAAATCACGCTAGACAGAAGGAAAAGCTAAAGGAAGTTG TTTTTCCTCACCATGATTTAGACACGCCGTGATTTTCTTATAGTGTATAGAAACATGCCTGACGTCTTAATATGGAATTA TATGACAAGAGTTTAAGTATATGACTCATGAACCAACTATCCTAAACATTTAAATTGTTGGAAAAAGAACACATGAATTA TTTTATATTATATTTCTAACATGACCTCCCACGCAAGAGCTCATTCGGCTTGAAGCATGGACAATGCATACACTACCTTA TGCTGAAATTCAACTTTTTATTATATTTGTAGGAAACAAGAATCAAACTCTACATTACTTATAAAAACTCTAATACCATG TCAAAACCCAACTACTTTAAAATCTTAAGTTGTTGGGTGAAGGACATGTGAATATTTACATTATATTTCTAACAATATTT ATTACTTCTGATAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAAT TACTGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATATTAAGGCC TGTGGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCTAGTACTCCAAAAGAATCTTGGTATT TTTAGTTCTTGAATCCAGAATTTTGACATGTTCAGTAAATGGTTATATGATATTTTGGTAGTTTCATATTATTGCAAACT CCACATAGGGTGTGATTACCTACTAGCATTACTTAATTCAGGAAAAAAATGTGTTGGCTCTCAATTTTCAGTAGGGAACT GTCTAATACTCTAATTAGGGACCAATACTCAATGGTAGAGAATACAAGCATGGATCAAAACCCAAATCAATGAAAAGAGT AGGGACTAAAATCTATTTTAAACAAAGAAAGGAAGTTTGTGCAAGTAGAGGAATACTTCATTAGCTAAAGTGATTTGGCA TATGATAAAAGCTTAAAAAAATGAGTTAGAAAGCATATTAGCCTTGCTGTCAACTTTTGTTAAATTATTTATCAGATAAA TTTTGTTGTTATAAATTATTCTTTGCCAACCTGTAGAAAAGATTTACTGCTGAAATCTGAGAATTATTCTTTGCCAGCCT ATAGAAAGATTTAAGAAAAGCAGAAAGCATAAACATAGCAGCAAATTAATTTAGCTTAGATATAAAAGAAAAGCACATTA TGGTGCAAACTCCCTGCACACGACATTTATTTGTTTGACATCAAATTCTTCTGGACATGCTAGCTTTGCCGTACATTTAA TAGCTTAGTGATCCTTTATGTAGAAGGCATCTTAAATTATCATTTTGGATGCTTCTAATATTTATACAATTGGTATTTAG CTCATTAAGTATTCCTGAGTCTGATGTTCCAAAATCTTTGATTAAGCATTGTTATATATTGTAGCTATGAATAACTTATT AGCTTTTGTGGAAGTTTACTTGCATGAATTAATGAGGAAAAAATCATGAGGACATTTTTGTTAAGGTCTCACACAAACTA GAGGTATGACTCGATACATACTTATAAAAGGTAGAACAATCATTACTTTTGGGCTAGTTTTTAGGTAGTTTGCGTCGCCC AAATTCTAAGATGTATCAAAGCCTATCCTAGAGATACGTTTGGGCTTAATAAGATTGGGGCGAGGAGGTGTCTTAAGGTC TCATATCGACTAGAGATATGAGTATGACTAAATAAGTCCTTGAGTTAGACCTAGCCCGAATTCTAAAACCTTCTTCCGTG TTTATTTATCTTTTTGAATCCGCACTAACTCCTTCTATCTATAACAGTGGTACCATATGTTCTAATATGTTTGCCATCTT TCTTTTGCTTTCCCTATTTCCAGCAGGCATTTCTTGGTGCTAAAGTATGACCTGATTGACCTTACTTAGATCAGCAATGT CTGGAGCATATCTATAATTGACTTGGACAAAGTGATATTCGTGTTCCTTCAATGTGAACAAATATTACAACGGGAAATTT AACTTAACGAACTATGATGAGCAATGGAGAATTATCTCTGCTTCACCTTTCAAGTATAGCTAAATGCTTTTTCTATGCTG CCGGCTCATTCTCACCATGCACAATGCTGCTCAACAAAGATATATTGAGGGCTCAGGGTTCGCTTTTCTTTTCTTTCAGC TTTTGGGGTGAGATACATTTTTATGGATTTGGCTCATAAAGTTAAGGAGTCAGTCATCTTAGAGAGTACAATAAGCTACC ATGATAGTTAACTGAGAAATCGATGGTTAA
CDS sequence (LotjaGi6g1v0005900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCCTCTTATAAAACACTCAACAACATCATCAACCAAAGGTTCTTTATTATACTTTGCTCTTTTCTTAATTCCTCT TGCCTTTTCTTTTTCCTTGCTTGTTAGTTTATCTTTGAGGATTGATTGGTATCATTTTTGGGTCAGAGCCATTGTCATGG AACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTCAGAG ACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCACCAAT TAAGATATGTGGAGATATCCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGTTCCA ATTACTTGTTTCTAGGCGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAAAATA AAATATCCAGAAAATTTTTTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATGATGA ATGTAAAAGGAGATTCAATGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATCATTG AAGATAAGATCCTGTGCATGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACGTCCA GCAGAAGTTCCAGAAACTGGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAATGAG TGAACGTGGAGTTTCATATACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATTTGTA GAGCGCACCAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAATTAC TGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATATTAAGGCCTGT GGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCATTTCTTGGTGCTAAAGTATGA
Protein sequence (LotjaGi6g1v0005900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMPLIKHSTTSSTKGSLLYFALFLIPLAFSFSLLVSLSLRIDWYHFWVRAIVMEREFLDAIINRLLEVRGRPGKQVQLSE TEIKKLCMVSRDIFLKQPMLLELEAPIKICGDIHGQYADLLRLFEHGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKI KYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKTFSDCFNCLPVAAIIEDKILCMHGGLSPELHSLNQISMLPRP AEVPETGLLCDLLWSDPSKEIQDWGMSERGVSYTFGATRVAEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNY CGEFDNAGAMMSVDDTLMCSFQILRPVDHKRPKFGFGKTTRFKAFLGAKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 40 | 40 | - | – | |
Phobius | 1 | 16 | 16 | - | – | |
Phobius | 17 | 35 | 19 | - | – | |
TMHMM | 17 | 39 | 23 | - | – | |
Phobius | 36 | 40 | 5 | - | – | |
Phobius | 41 | 370 | 330 | - | – | |
SUPERFAMILY | 45 | 351 | 307 | 8.23E-118 | – | |
Gene3D | 50 | 357 | 308 | 5.3E-134 | ||
PANTHER | 53 | 367 | 315 | 4.3E-208 | – | |
PANTHER | 53 | 367 | 315 | 4.3E-208 | – | |
CDD | 57 | 346 | 290 | 0.0 | – | |
Pfam | 58 | 104 | 47 | 8.1E-22 | ||
SMART | 78 | 348 | 271 | 6.5E-164 | ||
Pfam | 106 | 297 | 192 | 6.5E-40 | ||
PRINTS | 106 | 133 | 28 | 2.0E-94 | ||
PRINTS | 135 | 162 | 28 | 2.0E-94 | ||
PRINTS | 168 | 192 | 25 | 2.0E-94 | ||
ProSitePatterns | 169 | 174 | 6 | - | ||
PRINTS | 202 | 228 | 27 | 2.0E-94 | ||
PRINTS | 231 | 258 | 28 | 2.0E-94 | ||
PRINTS | 288 | 308 | 21 | 2.0E-94 | ||
PRINTS | 310 | 326 | 17 | 2.0E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0005900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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