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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0014200 |
| Transcript ID | LotjaGi6g1v0014200.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|Q94FT5|Q94FT5_FRAAN Pectate lyase; Found in the gene: LotjaGi6g1v0014200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2568185..2570189) extracted from Lotus japonicus Gifu genome v1.2.
CAAATGAAGATAAGCTGTTTGATTTAATGTCTGATAGAAATGTGGTTGATTCTTTATAACTGCCTATAAGTTGTTTGATC AATTGACTGTGAATTTGTAATAGCATTCTGAAAGCGATGTGTTTGATACAACATTCTGTATAGCTTTTTTTTACCTTGTG ATTGATTCCTTACAAATTGCCTATAAGCTGTTTGATCAATTGCTTGTGAAGTTGTGATGGCATTCTGAAAGAAATGTGTT TGATATGACAGGAACATTCACAACAGCACTGAAAGAAGGAAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGA TGATTGCTGGCGTTGTGACCCCAACTGGCAGCAAAACAGGAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACG CCATTGGTGGCCGTGATGGAAAATTCTATGTTGTCACTGACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACT CTTCGCCATGCTGTTATCCAAGATAGGCCTCTCTGGATTGTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCT CATCATGAACAGCTTCAAGACAATTGATGGCAGAGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGT ATGTTACCAATGTCATCATCCATGGCCTGCATGTCCATGACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCA ACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAA CTCCTTGTCCCATTGTGCTGATGGTCTTGTGGATGCTGTCATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCA CCCACCACAATGAGGTACATTCTACTTTCCCCTGCATCATCAATTGAGTTGCTGCTGCAATTTTTTCTAGCTCACATTGT TAATTAATCTGCTTGAAAATTCAGGTGATCCTGCTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGAC CATCGCCTATAACCACTTTGGAGAGGGACTGATCCAGAGAATGCCACGGTAGTATTTATTGCCACTTTTATTTTGTTTCC CTTTCCTCTTAGTCTGCTTTAAATGTAAATTAATGTTATACCATAAGACAGGTTGGTTTGGAGAAGCAACAACCTTCTTT CTTGGGTGCATTAATTTTCAGCCTCCTCCTGCTTTAAGAAAATCACAAAATTTTGTACATGTAGGGTCCAGATTGTGTTA AATCAAGTCATGGGTCGAAAATGAGTTAATCTGAAAAGGTACTGTGTTGAATAATGCAGGTGTAGACATGGATATTTCCA TGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCA ACCGATACAATGCTCCTCTTAACCCTTTTGCCAAGGAGGTACAATGCTGTTAATCATGTTTTAGGGTGTGTTTGGGTAAA CAACTTAATTAAGTGCTTATTACGATAAAAACTTAATCATAAGTTATTTTGAAAAACATATTGCAATTAGCTCAAATTAA GTTATAAGTAGGTGATCATATAGCCGCGTATTCATAAGCTAATAGGAGTCATTTATAGATCATAAGCTATTTATATAAAC ACTATGAAACTCTTGTACAAACACATATACTATAAGATAAACTCAAATAAGTTGAGTTTCACATTGAATTTGCTGATTTA TTGAGACAAATTGCTGTTGGCAGGTGACTAAGAGGGTGGAAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCA GAGGGAGACTTGCTGCTGAATGGTGCTTACTTCACCCCATCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAG CTTAGGAGCTAAATCTTCTTCAATGGTTGGTACTATGACTTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCT GCTAG
CDS sequence (LotjaGi6g1v0014200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAACATTCACAACAGCACTGAAAGAAGGAAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGATGATTG CTGGCGTTGTGACCCCAACTGGCAGCAAAACAGGAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACGCCATTG GTGGCCGTGATGGAAAATTCTATGTTGTCACTGACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACTCTTCGC CATGCTGTTATCCAAGATAGGCCTCTCTGGATTGTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCTCATCAT GAACAGCTTCAAGACAATTGATGGCAGAGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTA CCAATGTCATCATCCATGGCCTGCATGTCCATGACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCAACACAC TTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAACTCCTT GTCCCATTGTGCTGATGGTCTTGTGGATGCTGTCATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCACCCACC ACAATGAGGTGATCCTGCTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTATAACCAC TTTGGAGAGGGACTGATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTG GGAGATGTATGCTATTGGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTAACCCTT TTGCCAAGGAGGTGACTAAGAGGGTGGAAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTG CTGCTGAATGGTGCTTACTTCACCCCATCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAA ATCTTCTTCAATGGTTGGTACTATGACTTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAG
Protein sequence (LotjaGi6g1v0014200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNIHNSTERRKLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGKFYVVTDSRDDDPVNPRPGTLR HAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHVHDCKPTGNAMVRSSPTH FGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNH FGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDL LLNGAYFTPSGAGASASYARASSLGAKSSSMVGTMTSNAGALGCRRGRSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 370 | 368 | 4.0E-263 | – | |
| PANTHER | 3 | 370 | 368 | 4.0E-263 | – | |
| SUPERFAMILY | 5 | 364 | 360 | 5.13E-104 | ||
| Gene3D | 21 | 363 | 343 | 1.3E-124 | ||
| PRINTS | 44 | 61 | 18 | 1.6E-83 | ||
| PRINTS | 68 | 93 | 26 | 1.6E-83 | ||
| SMART | 96 | 293 | 198 | 1.1E-101 | ||
| PRINTS | 104 | 120 | 17 | 1.6E-83 | ||
| Pfam | 104 | 285 | 182 | 1.4E-20 | ||
| PRINTS | 168 | 189 | 22 | 1.6E-83 | ||
| PRINTS | 248 | 267 | 20 | 1.6E-83 | ||
| PRINTS | 270 | 289 | 20 | 1.6E-83 | ||
| PRINTS | 312 | 336 | 25 | 1.6E-83 | ||
| PRINTS | 341 | 364 | 24 | 1.6E-83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0014200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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