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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0014200 |
| Transcript ID | LotjaGi6g1v0014200.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A151S7N4|A0A151S7N4_CAJCA Pectate lyase; Found in the gene: LotjaGi6g1v0014200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2568185..2571350) extracted from Lotus japonicus Gifu genome v1.2.
ATAAATAACTTTTGGGTGTAACTGATTATGCTAGTAATTGCTTCTTTTAATTTGTGGTCCAATGTTCAGAAAATAAAAAA GCAGTAGTTTAATTAGGTGAAAATTGGTTATATTAGTTGAAGTAGTAGTACATTGATTGATGTAAATTTGGTTGTAAGAA TGTTTAATATAGTTTATTTAGGTCTATTGGCACAAATAACTAGCTCTATAGACTAAGGAAATAAACAAACATTATACAGT ATTGAATTAATCAATTGACCATGATTATGATTTTGGGTTTTGATTTCTATTTGCAGGGCAAAAGAAGCTGAGGAATTGAA TGAGCGTGCTGCGGTGGCTAACCCAGAGGAGGTTGCTTCAATGGTTGCGATGTGGGTCTTTCTTTCTACATTTTTCAACT TAGACAATTCTTGTTGCATTGTCCATTCTTAGCTAGGCAACGAAAATTAGAGAAAAAGAGAAAACTTAATGCACCTCACC TCACTCACTGCATTAATCCATAATGATATGTTCACGTGGTTTAGGCGGGTTGTAGGGTATGGTGTTCCCTCCCATTGTTG GAACCCCTAATAACTCTCTTCACCAACTGACCCATATTTTTCTCTGTCACGTTACTTTCCTGGTTTTGACATAGTTGAAT GAAATTGAATTTGTGACGACTCACCCGTTTTTTATTTTACCCCTTTAGGGATTTCAAGTTGGAACCTTGTCCCTGACTAC CTACATTCTCGCTCACTCTCCCTTTCACCCTTCATTGACTAACATCACATACACTATTTCACACCCGTTTTTCACGCTTA TAATAATTTTCCCATGTCTTTGAGTAAATGTTTTATACAACTCTTTCTGTCCCATGTTTTGTAATTATAATTATAATACT TGTTTCTTGCAGTTCTATTCTGCTTGATCTAGTTTTCTGTATTAAAACATTTACCATGTCATTGGTTCCTTACAAGTTAC AACGTGTCTGCAGTAGCATTATTTGTGTCAAGATCCGTGTAATGTCAAAAATGCATATTCATCATATCTTCCATTCCAGA TAAAGCCAAAAGGATTAGCCGTTATACTTGAATGTGTAACACTTATTGTCATGGTATTAATGATCATATGATAACTTGAG GAAATTGACTTTGTGTAGTTTGATTGAACCTGTATGCTCAACAAATGAAGATAAGCTGTTTGATTTAATGTCTGATAGAA ATGTGGTTGATTCTTTATAACTGCCTATAAGTTGTTTGATCAATTGACTGTGAATTTGTAATAGCATTCTGAAAGCGATG TGTTTGATACAACATTCTGTATAGCTTTTTTTTACCTTGTGATTGATTCCTTACAAATTGCCTATAAGCTGTTTGATCAA TTGCTTGTGAAGTTGTGATGGCATTCTGAAAGAAATGTGTTTGATATGACAGGAACATTCACAACAGCACTGAAAGAAGG AAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAGCAAAACAG GAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACGCCATTGGTGGCCGTGATGGAAAATTCTATGTTGTCACTG ACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACTCTTCGCCATGCTGTTATCCAAGATAGGCCTCTCTGGATT GTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCTCATCATGAACAGCTTCAAGACAATTGATGGCAGAGGAGC CAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCCTGCATGTCCATG ACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCAACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCC ATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAACTCCTTGTCCCATTGTGCTGATGGTCTTGTGGATGCTGT CATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCACCCACCACAATGAGGTACATTCTACTTTCCCCTGCATCA TCAATTGAGTTGCTGCTGCAATTTTTTCTAGCTCACATTGTTAATTAATCTGCTTGAAAATTCAGGTGATCCTGCTGGGC CACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTATAACCACTTTGGAGAGGGACTGATCCAGAG AATGCCACGGTAGTATTTATTGCCACTTTTATTTTGTTTCCCTTTCCTCTTAGTCTGCTTTAAATGTAAATTAATGTTAT ACCATAAGACAGGTTGGTTTGGAGAAGCAACAACCTTCTTTCTTGGGTGCATTAATTTTCAGCCTCCTCCTGCTTTAAGA AAATCACAAAATTTTGTACATGTAGGGTCCAGATTGTGTTAAATCAAGTCATGGGTCGAAAATGAGTTAATCTGAAAAGG TACTGTGTTGAATAATGCAGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGC TATTGGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTAACCCTTTTGCCAAGGAGG TACAATGCTGTTAATCATGTTTTAGGGTGTGTTTGGGTAAACAACTTAATTAAGTGCTTATTACGATAAAAACTTAATCA TAAGTTATTTTGAAAAACATATTGCAATTAGCTCAAATTAAGTTATAAGTAGGTGATCATATAGCCGCGTATTCATAAGC TAATAGGAGTCATTTATAGATCATAAGCTATTTATATAAACACTATGAAACTCTTGTACAAACACATATACTATAAGATA AACTCAAATAAGTTGAGTTTCACATTGAATTTGCTGATTTATTGAGACAAATTGCTGTTGGCAGGTGACTAAGAGGGTGG AAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTGCTGCTGAATGGTGCTTACTTCACCCCA TCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCTTCTTCAATGGTTGGTACTATGAC TTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAG
CDS sequence (LotjaGi6g1v0014200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCGATGAAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTG GCAGCAAAACAGGAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACGCCATTGGTGGCCGTGATGGAAAATTCT ATGTTGTCACTGACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACTCTTCGCCATGCTGTTATCCAAGATAGG CCTCTCTGGATTGTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCTCATCATGAACAGCTTCAAGACAATTGA TGGCAGAGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCC TGCATGTCCATGACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCAACACACTTTGGGTGGAGGACAATGGCT GATGGAGATGCCATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAACTCCTTGTCCCATTGTGCTGATGGTCT TGTGGATGCTGTCATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCACCCACCACAATGAGGTGATCCTGCTGG GCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTATAACCACTTTGGAGAGGGACTGATCCAG AGAATGCCACGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGG AAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTAACCCTTTTGCCAAGGAGGTGACTAAGA GGGTGGAAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTGCTGCTGAATGGTGCTTACTTC ACCCCATCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCTTCTTCAATGGTTGGTAC TATGACTTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAG
Protein sequence (LotjaGi6g1v0014200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAMKLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGKFYVVTDSRDDDPVNPRPGTLRHAVIQDR PLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHVHDCKPTGNAMVRSSPTHFGWRTMA DGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQ RMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYF TPSGAGASASYARASSLGAKSSSMVGTMTSNAGALGCRRGRSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 3 | 357 | 355 | 3.64E-104 | ||
| PANTHER | 4 | 363 | 360 | 7.8E-259 | – | |
| PANTHER | 4 | 363 | 360 | 7.8E-259 | – | |
| Gene3D | 14 | 356 | 343 | 1.2E-124 | ||
| PRINTS | 37 | 54 | 18 | 1.4E-83 | ||
| PRINTS | 61 | 86 | 26 | 1.4E-83 | ||
| SMART | 89 | 286 | 198 | 1.1E-101 | ||
| PRINTS | 97 | 113 | 17 | 1.4E-83 | ||
| Pfam | 97 | 278 | 182 | 1.4E-20 | ||
| PRINTS | 161 | 182 | 22 | 1.4E-83 | ||
| PRINTS | 241 | 260 | 20 | 1.4E-83 | ||
| PRINTS | 263 | 282 | 20 | 1.4E-83 | ||
| PRINTS | 305 | 329 | 25 | 1.4E-83 | ||
| PRINTS | 334 | 357 | 24 | 1.4E-83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0014200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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