Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0016000 |
| Transcript ID | LotjaGi6g1v0016000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein; TAIR: AT4G33270.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20; TrEMBL-Plants: tr|A0A151SFQ0|A0A151SFQ0_CAJCA Anaphase-promoting complex subunit cdc20; Found in the gene: LotjaGi6g1v0016000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2814057..2821392) extracted from Lotus japonicus Gifu genome v1.2.
CTGATTTGATAAACTGAATAACTATGCATGCAGAAAGAGGCCAAGGTCTTGGATGCACCAAATATTAGAAATGACTACTA TTCAAACTTCATGGATTGGGGGAAAAACAATATTCTTGCTGTTGCTTTGGGATCAGAAATTTACCTTTGGAACTCTGTGA ACAACAATGTACATAGGTTGTTTGAAGCCACTCACAATGATTGTCCCACAAGTGTTGCCTGGTCACGGGATGCCAAACTT TTCGCAGCAGGATTTATGCACTCTAAGCTTCAACTCTGGGATGCTGAGACTTCTAAGCCAGTATGTATCTCTCTATTTAT CTGCTTCTCTAATTATACAATATGAACGTCTGGACTCAATTCCTAGTTTTTAACTTTCAGATAAGAGTCCTAGAAGGTCA TCGTCAAAGGATTGGAACCATTGCATGGAGTGGCGATACTTTAACTTCTGGAAGCCATGACAAATCTATAATCAACCATG ATGGTACGTATAGTTCTTTTTAACCCTTTAGATATATTTTGAGTACAGAAAGCTATTGATTAAATGTGATGATATAACAT CTTGCTTTATTACGTTACTGTGAGCAGTTAGAGCAAGAAGAAATGTTATTTCATGGGTAAAAGCACACGGAGCAGAAGTT TGTGGCTTAAAATGGTCCAAAAGGGGAAATATGCTGGCAAGTGGCGGCAATGACAATCATATCTACATATGGGAATCATC TAAAATGAATTCATCGAGTTTCTTGCATTGTTTTAAGGACCATTCTGCTGCAGTCAAAGCCCTTGCTTGGTGCCCTTATG ATTCAAATGTGCTTGCTTCTGGAGGTGGTACAAATGATAGGTGTATTAAGATATGGAATATTCAAAAAGGAACTTGCATT CGCAGCATAGATACTACAGCTCAGGTAAGATACTTATTGTTTGTTTTTGGAGAATTAATAATTTCCATTCACCACAAATA ATTAATCACCATTGTTTTAATTGATTACTATTTAGTCTTTTGGACAAATGCATCCATTGTTTACTCTTGCTGAATGATAG TTTGGCATTATGTGCAGGTTTGTGGATTAGAATGGAATAGGCATCACAAGGAGATATTAAGTGGCCATGGATTTAGCACA AGTACATCCCACAACGAACTTTGCTTGTGGCGGTATCCATCCATGAATAAAGTGAGAGGCTTGGACCCTCATGCTTCAAG AGTCCTCCATCTATCTCAGGTATATATGCTTCCTATAAGTAAAAACTTTAACAGTTTGTTTATTTCTCTCTTCTTTTCCT ATCACACCACTCATCATATATCTCACTTCTCTCTCTTTTATTCCAATGTGGTGTGGGGTGGAATTGGGGTGTCAAAGTAT TATTTTCCATAACTTAAACTCTAGAACCTGGTCCAATTATAAATATTTAAAGCATGTAATGTAAGGTATGCAATCAGGAA GAGCATCTTCTGTAGTACCTGTATTTGTTTGAACACTAGTGCCATATTATGCTGATGACTCCAATGAATTAATCCATTTA AACTCAATCCTGGCAATTATTTCTTTCAAGTTAACACTAGGTTCTTATCTCTTGCAGAGCCCAGATGGGTTAACAGTGGT GTCAGCTGGGGCAGATGAAACTCTTCGCTTTTGGGATATTTTTGGGCCACCTGCTACTGATACATCAAAGATCTCACATC TGGATAACCTTTTGTCCCTGAAGATATCCGCATTAAGATAACATTTTCTTTTACGAGCTTGTTTGGTTGCGGACCAAAGA GCACTTGTTGGAGCTTATCTAACTCATTTTTTAGTAGCTCCAATAAGTGTTCTTTAGTCCGTATCCAAACGCGCTCTATA TATTTTTTCTCATTTTGCTTCCTCACTTTTCACTCTAATTTGTTTTAATTTTTCTGTTTTGTGAAGGGTGATCGTTTCAC TCCCAACAGACGTGGGGCTACTAAATTGATATGATCTTGTTGCATGCAGTTGGGAGGAAACGGCCTTTGGAAGTTCTATT GAGCTAGCAGAGGGAGGGTGTTTATTATCATCAAGACATACAGGCCATTGACAAGAGACTTTGGCCTATTAGTTTCATTG TATGCTATTATGCATATTATACACAGTTTCCAATTATTAAAGACAATTTGTATAGATTAGTAGTGACTAGGCAAGGCAGA GATAGTGCTAATTAGTACTGATGCAAGACATAAATTGCTACCCATCAGTAGCATCATTTGCCTTAACAGCAATTGTAAAA GTTCACAGGATCACTATTAGTAATAAGTAGTAGTACAAGGACTATATTGTAATAATATAGAAGTTCATTGTAAGCTGACA TGAGCTGGCATGTTAGTTACTGATTAGTTTAGAGTTTGTTAGGTTGTTATATAATTAGTTAGTGTCTAATCTAGGTATAA ATAGCTATCTACAGTGTTGTATTGCAATTCAGTTGAAATCAGAATATCAAAGTTTCTTCTTCTTCTTCAATCTCTCTCAA TCTCTCTCAAGAGTTCTCACATTCTTTGATGGTATCAGAGCCCTAGATTGGGCTCTGCCATCACCAGCTTCCGCAGAAAT GGTGCGAAACGCACAAATCAACAACAACAATGGAAATCAGCAAGCACATGTGGTTCAGGATCCAGCGCAAAATCCGATTT CGCCGTATTACATTCATTCCGGTGAAAATCCGTCGGCTACAATGGTATCTCCACCTCTCAATGGAAGGAATTACAGTGCC TGGGCTCGATCGATGAAGCGAGCACTTGTGGCGAAGAACAAGTTCAAGTTTATCAATGGCGAAATTCCAGTTGCAGTACC TGGTGATGCCAACTACGATGCTTGGGATCGCTGCAACAGCTTGATCCATTCATGGATACTCAATTCGGTAACTTCTACAA TTGCTAATAGCATAGTTTTTGTTGAAAATGCTTGTGATGCTTGGAAGGATCTTCGTGATCGATTTTCTCAGGGAGATTTA GTGAGAATTGCTGAATTGCAAAATGAAATCAGTAGCTTAAAGCAAAATTCTATGTCAGTAAACGATTATTACACTGAAAT CAAAACTCTTTGGGAAGAATTGGAGCACTATCGACCAATACCTCAATGTAGATGTACTGTTCCCTGTAGATGTGAAGCCA TAGAGCAAGTAAAATTGTTTAGGGAGCAAGATAATGCTATTAGATTTCTTTTGGGACTGAATGAGAATTTTGGAGTTATT AAGTCTCAGATTTTGATGTCTAATCCTCTGCCATCCATAGCAAAAGTTGTTTCTTTAGCTATGCAACATGAAAGACAGTC AGATTTTGAAGAAAGTGATGAATCAAAGGTTATAGTGAATGTTGCAGAAGGAAGAAAGTCATATGGCAGGGGAAAAATGC CTAATTCTAGTTATTCTGGAAATTCTAGCTATTCTGGATACAAGGGTGCAGGAAAATTTTGTACCTATTGCAAGAAGCCT GGTCATATTATTGACATCTGCTATAAACTGCATGGTTATCCCAACACTTCCAATACTAAATTTACTTCTAATTCCACTAC TCATGTAAACAATGTCAGTGGAGGTAGTGGAGGTTATGATACAGAAGATGATCAAGGAGATGACTCAATTCAAATAAAAG AGAGTGAAGAACCATTCACAGCTGATCAGTACAAAAGAATAGTGTCTATAATTCAACAAGTTGCTGGTTCATCAAAGAAA GTTGCAGAAACATGACAAGTTGCAGTTAATCATGTGATCAGAACTACTAATCATAATTCAGGAACCACAGGGCATGGTAA GCATTTTGCTCTCTCTTGTTCACAAAAGTATGATAGTAGAGATTGGGTGATTGACTCAGGAGCTAGTGACCACATTTGTT TTAACAAGTTGTGTTTTGAGACTCTAGCTGAAGTAAAGCCTATAAGCGTTAGTTTGCCAAATGGAACAATCATAGATACC TGTTATGTAGGAACAGTTAGACTTACAAGTCTAATATTGTTAACTCATGTCTTATTTGTTCCTGAGTTTAGCTACAATTT AGTTTCAGTACATAAATTGGCAAAGAGAAATCATTGTGACATCATTTTTGGTGAATTCACTTGTGATATTCAGGAGGTGC ATTCCCAGAAGAGGATTGGTTTGGGTAGCTTGAAGGAAGACAAGTTATACCATTTAGTAGTTACAAGTCCTTCTAGTGTA TGTTTTAGTGTTCAGCATTCTGTTTCTGAAATAAACAGCTCCACTCAGGTTATTCCACCTGGAGCTTTGTGGCATTTTAG GTTGGGACATTTGTCTCATGATAGGATTCAAGCTTTGAATAAATTCCATAGTTCAGTAAATATTAGTAGTTTACTAGTAT GTGATATCTGTCATCTGGCCAAGCAGAAGAGGAAAATGTTCCCTGACAGTTTACATAATTCTAAGAATTGCTTTGACCTT GTGCACATGGACATTTGGGGGCCACTTGCTATTCCCTCAGTACATAATCACAAATATTTCCTTACTGTTTTGGATGATCA CAGCAGATTTGTTTGGATAGTCTTGCTTAATAATAAAGGACAAGTTCAGCATCAGGTTCAGTCATTTGTGGCCATGGTAC AAACTCAGTTTGGGCATACTGTTAAAGCTATTAGAACTGACAATGGGCCTGAGTTCATCATGCCATCTTTCTATTCTGCA AAGGGTATTCTACATCAGAGAAGTTGTATTCATACACCTCAGCAGAATGGGAGGGTAGAAAGGAAGCATCAGCACATTCT GAACATAGCCAGAGCATTGCTTTTTCAGTCTAAATTGCCCAAGAAAATGTGGAGCTATGCTGTGTTACATGCAGTCTTCC TTATGAACAGGATACCAAGCAAGCTGTTAAATGATAGGTCACCTTATCATTTACTTTATCAAGAGAAAGCAGATTTAGAG AGTTTAAAAGTGTTTGGATCACTATGTTTTGCTAGTACAATATCCTCTCAAAGATCTAAACTAGACCAAAGAGCCAGGAA GTGTGTCTTCTTGGGATTTAAGCAAGGTGTAAAGGGATTTGTTTTGCTAGACATATCTACTCATGAGATCATAATTTCCA GAGATGTGGTGTTTCATGAACACATTTTACCTTATAAGAGTTCTACACTACCTACTTGGGAGTGTTTAGATTTGCAAGCA CAAGACAAGAAACCTGGAGATATTGAGAAGTCAGAAGTGCCACAATCTATACTTGAAAGTCAGATGCTGCAGAATGAAAA AGATTCTTCTGTTGTTCCAGAAGTGATTACTGATAATTCTCAGGCAGAAAGGCTAACTTTATCTCCTCAGACTGAGAATC TGAACTTGCAACATTCCATAGATCTTGATGCTACAGAGACAGAGAAAGAAGGGGAAGTTCCAAGTTTGAGAAGATCAAGT AGACAAGTAAAGAGGCCAGCTTTTCTACAAAATTTTCAATATAGTTCATTGCCTTCCAAAACTAGTACAGTACATAGCAT CACACAGTACTATTCTCATGATAAACTCTCATCACCACATCAATCCTATGTACTTAGTATCTCATCAGATAAAGAGCCTA CTACTTTTGAAGAAGCTAATAAGCATTCCCACTGGCAAGAGGCTATGAAGGCAGAGATATTGGCTCTAGAGAGAAATGGA ACCTGGAAATTGGTAGACTTACCAAATGGTGTAAAACCTATAGGGAATAAATGGGTTTACAGGATTAAGAGGAATGCAGA TGGCACTTTAGCTAGATACAAAGCTAGGCTGGTAGCAAAAGGATATAATCAAGTTGAAGGACTGGATTATTTTGACACTT TTTCTCCAGTTGCCAAACTCACCACTGTTAGAGTAATACTGGCCTTAGCAGCAGCACAGAACTGGCATTTGCATCAGCTG GATGTAGACAATGCATTTCTTCATGGAACTTTAGATGAAGATGTGTACATGCAAGTCCCGGCAGGAGTTTTGACAGAGAA GCCTAATCAAGTATGCAAGTTGCAAAAGTCACTTTATGGACTTAAGCAGGCTAGCAGGAAATGGTATGAAAAACTTGCTG CTCATCTTATACATCTTGGATACACACAAACTGCTTCAGATTACTCTTTATTTGTTAAATTTCAAGGAGACATGTTCACA GGATTGCTTGTTTATGTGGATGATGTTATTCTGGTTGGTAACAGTCTCTTAGAATTTCAAATGGTTAAGGATTCTCTACA TTCAGCATTTGGTATTAAAGATCTAGGTGTTTTGAAATATTTCCTTGGCCTAGAAGTAGCTCATTCTACCTCTGGAATCT CATTGTGTCAAAGGAAATACTGTTTGGATTTGCTTCAAGAAACTGGAAATCTTGGTAGTAAGCCAGTTTCCACTCCATTG GATCCAGCTCTCAAGTTAACAATCGATCAAGGAAAACCTTGTGAAGATGTCATGGGATATCGCAGATTGGTAGGCAGATT GTTGTATTTGACACACACTAGACCAGATATTTCTTTTGCAACACAGCAACTGAGCCAGTTCATGAGCCAACCTACTGATA TACATTACACAGCAGCACTTAGAGTTTTAAAGTACTTGAAAGCATCTCCAGGACTTGGTTTGTTTTTTTCCAGGAACACT CCAATCACTTTACAAGGTTATTCAGATGCAGATTGGGCAGGTTGCTTGGATACGAGAAGGTCAATATCAGGGTACTGTTT TTATCTTGGTAATTCACTCATATCTTGGAAAGCAAAGAAGCAGGTCACAGTATCCAGGTCTTCTAGTGAAGCAGAATATA GAGCTCTTGCCTATGCCACTTGTGAACTACAATGGCTACTTTACTTGTTGAAAGACTTGAGAATTTCTTGTCTTAAAACA CCTGCTTTGTTTTGTGATAACCAAAGTGCTTTGCATATTGCTGCCAATCCAGTGTTTCATGAAAGGACTAAACACTTGGA AATTGATTGCCATGTTGTCCGAGAGAAGTTGCAAGCTGGAGTTGTCAAGCTATTGCCTATTCCAACAGCTTTGCAAGTTG CAGATATCTTCACTAAAGCTTTGCAGCCTCGGATCTTTCAGGGATTTCTGGCTAAACTTGCAATGATCAATATCTTTCCA CCTTCAGCTTGTGGGAGGGTGTAAAAGTTCACAGGATCACTATTAGTAATAAGTAGTAGTACAAGGACTATATTGTAATA ATATAGAAGTTCATTGTAAGCTGGCATGAGCTGGCATGTTAGTTACTGATTAGTTTAGAGTTTGTTAGGTTGTTATATAA TTAGTTAGTGTCTAATCTAGGTATAAATAGCTATCTACAGTGTTGTATTGCAATTCAGTTGAAATCAGAATATCAAAGTT TCTTCTTCTTCTTCAATCTCTCTCAATCTCTCTCAAGAGTTCTCACATTCTTTGAG
CDS sequence (LotjaGi6g1v0016000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAAGAGGCCAAGGTCTTGGATGCACCAAATATTAGAAATGACTACTATTCAAACTTCATGGATTGGGGGAAAAA CAATATTCTTGCTGTTGCTTTGGGATCAGAAATTTACCTTTGGAACTCTGTGAACAACAATGTACATAGGTTGTTTGAAG CCACTCACAATGATTGTCCCACAAGTGTTGCCTGGTCACGGGATGCCAAACTTTTCGCAGCAGGATTTATGCACTCTAAG CTTCAACTCTGGGATGCTGAGACTTCTAAGCCAATAAGAGTCCTAGAAGGTCATCGTCAAAGGATTGGAACCATTGCATG GAGTGGCGATACTTTAACTTCTGGAAGCCATGACAAATCTATAATCAACCATGATGTTAGAGCAAGAAGAAATGTTATTT CATGGGTAAAAGCACACGGAGCAGAAGTTTGTGGCTTAAAATGGTCCAAAAGGGGAAATATGCTGGCAAGTGGCGGCAAT GACAATCATATCTACATATGGGAATCATCTAAAATGAATTCATCGAGTTTCTTGCATTGTTTTAAGGACCATTCTGCTGC AGTCAAAGCCCTTGCTTGGTGCCCTTATGATTCAAATGTGCTTGCTTCTGGAGGTGGTACAAATGATAGGTGTATTAAGA TATGGAATATTCAAAAAGGAACTTGCATTCGCAGCATAGATACTACAGCTCAGAGCCCAGATGGGTTAACAGTGGTGTCA GCTGGGGCAGATGAAACTCTTCGCTTTTGGGATATTTTTGGGCCACCTGCTACTGATACATCAAAGATCTCACATCTGGA TAACCTTTTGTCCCTGAAGATATCCGCATTAAGATAA
Protein sequence (LotjaGi6g1v0016000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKEAKVLDAPNIRNDYYSNFMDWGKNNILAVALGSEIYLWNSVNNNVHRLFEATHNDCPTSVAWSRDAKLFAAGFMHSK LQLWDAETSKPIRVLEGHRQRIGTIAWSGDTLTSGSHDKSIINHDVRARRNVISWVKAHGAEVCGLKWSKRGNMLASGGN DNHIYIWESSKMNSSSFLHCFKDHSAAVKALAWCPYDSNVLASGGGTNDRCIKIWNIQKGTCIRSIDTTAQSPDGLTVVS AGADETLRFWDIFGPPATDTSKISHLDNLLSLKISALR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 276 | 276 | 2.2E-83 | ||
| PANTHER | 2 | 231 | 230 | 9.6E-140 | – | |
| PANTHER | 2 | 231 | 230 | 9.6E-140 | ||
| SUPERFAMILY | 24 | 262 | 239 | 5.13E-50 | ||
| SMART | 45 | 85 | 41 | 0.16 | ||
| Pfam | 47 | 108 | 62 | 1.4E-4 | ||
| ProSiteProfiles | 53 | 225 | 173 | 28.159 | ||
| ProSiteProfiles | 53 | 94 | 42 | 9.874 | ||
| SMART | 88 | 125 | 38 | 0.0029 | ||
| SMART | 129 | 168 | 40 | 6.7E-7 | ||
| Pfam | 136 | 167 | 32 | 8.8E-6 | ||
| ProSiteProfiles | 136 | 168 | 33 | 12.915 | ||
| ProSitePatterns | 155 | 169 | 15 | - | ||
| SMART | 174 | 216 | 43 | 1.1E-5 | ||
| Pfam | 177 | 216 | 40 | 2.1E-4 | ||
| ProSitePatterns | 203 | 217 | 15 | - | ||
| SMART | 219 | 251 | 33 | 0.88 | ||
| Pfam | 223 | 251 | 29 | 0.05 | ||
| PANTHER | 230 | 263 | 34 | 9.6E-140 | – | |
| PANTHER | 230 | 263 | 34 | 9.6E-140 | ||
| ProSiteProfiles | 232 | 252 | 21 | 9.573 | ||
| ProSitePatterns | 238 | 252 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi6g1v0016000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…