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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0016900 |
| Transcript ID | LotjaGi6g1v0016900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|F6HQE5|F6HQE5_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0016900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3015683..3018825) extracted from Lotus japonicus Gifu genome v1.2.
TGTAACAGCATCCAAGCAATATCATTGTTGTCCTTTACTATGTGAATCAGGAGAGCACATGTAAGCTGAAATCATGCTTA CGTTAGGATTGGCATAAGGAATGATCAAGCATATTTTGAATCCTAACATATTTAACAACACAAAGTGACAGATTCTACTG CTTCTAAAACTCTCCCCTCCTTGTGGGAAACCTTACAGAAATTGTAAGCCTCAAAGGAGAGGAATTCAGGGGTCAAGGAG AGGAATTCAGGGGTCTGTAAGAACCTCAAAATAGAAGCACAAGGGATCCCTATTGTTCAACATTTTTGTCTGTTGGATAT GTTGAGCATGCAGCCTATGACTGAGTATCCAGATTTGTTTTTTAAGAGTGCCGAGGCCCAAAATATACGTGGGCAGAGGC CCAGGACACAAACAACATAACACAATGGTGAAGAGTGAAGATTGACCAAAAAAAAATAAAAATGGTGAAGAGTGAAGATG ACCTAGTTAAATTAGCGGCTACAAAGGGCATTTGCTGAAATCCCAACCCGATGAAACTCCTCCGTGCCACCCTCAAATCT TTTCGCCACATGGTCCGAATGAACGTAATGATCCGTGGCTTCGCCACAGAATCGGTGATGAGTTGCAAGGAGAAGAAGGT GGGAGAAACGTTTGGGTTATTGAGGATGGAGCCATATTTGGTTTCGTTCAAAGGCGTTATTAAGGAATTGTGTGAGAAAG AGAGGATGGAAGAGGCTAAGGAGGTGGTTAGGGAGATGAATCGGAAGGGTTTGGCCCCTGATTGTGAAACTTACAACGCC TTGATCTGTGGCATGTGTAAGGTTAGGAATATGCTTTGTGCTGTTGAGCTTTATGATCAGATGCGTGTGAGGGGGTTGAG TCCCAACGAGAGGACTTACATGTCTCTGATTGATTTGTTATGCACATGGTGGCTGGATAAGGCTTATAAGGTTTTCAATG AAATGATTGCTTCTGGGTTTTTGCCCTCGGTTGCTACATACAACAAGTTCATTACTGCATATCTCTCTTCCGAGAGGGTT GAGCAGGCTTTGGGGATTTTTAGTGCCATGGCTGAGAGGGGTTTGTCCCCTGATCTTGTTAGTTATAACGCTGTAATTTC TAAGTTTTGCCAAGACGGTGAGCTGGAGAAGGCACTTGAAATCAAGGCGGAGACAGTTGAGAAGGGCATCTTGCCTGATG ATGTCACTTACTCGGCCCTTATACAGGCCCTGTGCCTGCAGGGAAGCCTGCCAGAAGCTTTTGACCTCTTCCTAGAAATG CTGCGAGGGGATGTGTCACCCAGTAATTCTACTTATACTAGATTGATGTATGCTTATTGTCTTGTAGGTGAATTCAGTAT GGCTTTTCATTTGCATGATGAAATGAGACACAGGGGTTTTTTGCCTGATTTTGTTATTCAGTTTTCACCATCTCTTGTTA CATTCAACGCCCTTATTCATGGGCTTTGCTCTTTGGAGAGGGTTGACGAGGCTCTGGGTATTTTGAGAGGCATGCCTGAA ATGGGTTTGTCCCCTGATGCTGTTAGTTATAACACTGTTTTATTCGGCTTTTGCCAAATCAGGGAGTTGAAGAAGGCGTA TGAATTGAAAGTCGAGATGGATGAAAAGATTATCTGGCTGGATGAATACACATATGAATCACTTATGGAAGGCCTGTCAG ATGAGGTTACTTATTCTAGTTTGTTGAATGATTATTTTGCTCAAGGTAACATGCAAAAGGTTTTTAAATTGGAACGAGAA ATGACACGTAATGGTTATTTGCCAGATAGTGTTACCTTAGGTGTGTTTATTAATGGACTTAATAAGAAAGCTACGACAAG CATTGCTAAGGGGATTCTTTTGCGGATGATTTCTTCTCAGTGTTTGACTATGCCATCTTATATAATATATGATACTCTGA TAGAGAACTGCAGTTATGTTGAATTTAAGAGTGCGGTAGGGCTTGTCAAAGATTTCAGCACCAGGGGTTTAGTGAATGAA GCAGCGATAGCTCATGAAAGAATGCATAACATGAGTGTTAAGCCAGATGGAGCAGTCTATAATTTATTAATATTTGATCA CTGTAGAAGAGGCAATGTTAATAAGGCGTATGAAATGTACAAGGAGATGGTGCATTATGGTTTTTTTCCTCATATGTTTT CTGTACTTTCTCTGATTCATGCTCTATATTACGATAGAAAGAACAGTGAGATGGGTTGGGTAATTCGAAACACATTGAGG AGCTGTAATCTCAATGATTCTGAACTACATCAAGTACTTAATGAAATTGAAGTCAAGAAGTGTAAGATTGATGCTCTTTT GAATGCGCTAGCTAAAATAGCCGTGGATGGCATGTTGCTTGATCGTGGAAAGTGTTCATATGCTTCTGACCGCTTCACTC CTGCCACCATTATCGTCTTCTCGATTTTCATCTTAAAAGGTAAATCTCGCTTCTTCTTTTCATGCTTGAGTCTTTTGGTG ATGGGATTTTGGCTCAGGTTTCTGTCGTTATTGATTGGAGATTCGGGAATTTGATTGTGTTATGGGATTTCTCTTTATTA CCCAATGGTCGGAACTTCTTCTTTTTTTCCTGAAACTTTTTTCTGACTGTAGAACCAGTTTGGTATGCTGATATCATTTG TTTTCTGTTAGTAACTTACAGTCCTGCTTCAGTTTGATTTTTTAAAACACATCTACGAATTAAAATATTTTGCTTCTTTT TTACTTTTAGCTGGCATAATGCTTATGTCTTGTTTCATTGTCATTGAAAACAGGTCTCCAAGATGTCTTCTCGTTCTTCT AATTGACCATTTAACAGCAGATTTAGATTCTATGTATGTGGTGGCTTTAGACAGACAATTATTGACTCTGTATGTTTAAG ACCTATTTTTATTCGTTTGTAAGACCTATTGTTATTGCTACAGCTTTGGACCTGTTTGTTTGTATGTTGAAGCTTAGTTT GTATATTGAAGCTTAGTTTTAGTGGTGTTTGTTTCCAATTAGATGCAGGTTTATGGTTTATTCTTGGAAATGCAATGATA TGCAAGTTATGTTATTGGGAATGGAATGCAATGATATGTAGAAAGACCTTTTTGCTGCTCGCCTTACCTATTGGCTTCTC TAAGAGGGCATTTTTCTTTTAAA
CDS sequence (LotjaGi6g1v0016900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACTCCTCCGTGCCACCCTCAAATCTTTTCGCCACATGGTCCGAATGAACGTAATGATCCGTGGCTTCGCCACAGA ATCGGTGATGAGTTGCAAGGAGAAGAAGGTGGGAGAAACGTTTGGGTTATTGAGGATGGAGCCATATTTGGTTTCGTTCA AAGGCGTTATTAAGGAATTGTGTGAGAAAGAGAGGATGGAAGAGGCTAAGGAGGTGGTTAGGGAGATGAATCGGAAGGGT TTGGCCCCTGATTGTGAAACTTACAACGCCTTGATCTGTGGCATGTGTAAGGTTAGGAATATGCTTTGTGCTGTTGAGCT TTATGATCAGATGCGTGTGAGGGGGTTGAGTCCCAACGAGAGGACTTACATGTCTCTGATTGATTTGTTATGCACATGGT GGCTGGATAAGGCTTATAAGGTTTTCAATGAAATGATTGCTTCTGGGTTTTTGCCCTCGGTTGCTACATACAACAAGTTC ATTACTGCATATCTCTCTTCCGAGAGGGTTGAGCAGGCTTTGGGGATTTTTAGTGCCATGGCTGAGAGGGGTTTGTCCCC TGATCTTGTTAGTTATAACGCTGTAATTTCTAAGTTTTGCCAAGACGGTGAGCTGGAGAAGGCACTTGAAATCAAGGCGG AGACAGTTGAGAAGGGCATCTTGCCTGATGATGTCACTTACTCGGCCCTTATACAGGCCCTGTGCCTGCAGGGAAGCCTG CCAGAAGCTTTTGACCTCTTCCTAGAAATGCTGCGAGGGGATGTGTCACCCAGTAATTCTACTTATACTAGATTGATGTA TGCTTATTGTCTTGTAGGTGAATTCAGTATGGCTTTTCATTTGCATGATGAAATGAGACACAGGGGTTTTTTGCCTGATT TTGTTATTCAGTTTTCACCATCTCTTGTTACATTCAACGCCCTTATTCATGGGCTTTGCTCTTTGGAGAGGGTTGACGAG GCTCTGGGTATTTTGAGAGGCATGCCTGAAATGGGTTTGTCCCCTGATGCTGTTAGTTATAACACTGTTTTATTCGGCTT TTGCCAAATCAGGGAGTTGAAGAAGGCGTATGAATTGAAAGTCGAGATGGATGAAAAGATTATCTGGCTGGATGAATACA CATATGAATCACTTATGGAAGGCCTGTCAGATGAGGTTACTTATTCTAGTTTGTTGAATGATTATTTTGCTCAAGGTAAC ATGCAAAAGGTTTTTAAATTGGAACGAGAAATGACACGTAATGGTTATTTGCCAGATAGTGTTACCTTAGGTGTGTTTAT TAATGGACTTAATAAGAAAGCTACGACAAGCATTGCTAAGGGGATTCTTTTGCGGATGATTTCTTCTCAGTGTTTGACTA TGCCATCTTATATAATATATGATACTCTGATAGAGAACTGCAGTTATGTTGAATTTAAGAGTGCGGTAGGGCTTGTCAAA GATTTCAGCACCAGGGGTTTAGTGAATGAAGCAGCGATAGCTCATGAAAGAATGCATAACATGAGTGTTAAGCCAGATGG AGCAGTCTATAATTTATTAATATTTGATCACTGTAGAAGAGGCAATGTTAATAAGGCGTATGAAATGTACAAGGAGATGG TGCATTATGGTTTTTTTCCTCATATGTTTTCTGTACTTTCTCTGATTCATGCTCTATATTACGATAGAAAGAACAGTGAG ATGGGTTGGGTAATTCGAAACACATTGAGGAGCTGTAATCTCAATGATTCTGAACTACATCAAGTACTTAATGAAATTGA AGTCAAGAAGTGTAAGATTGATGCTCTTTTGAATGCGCTAGCTAAAATAGCCGTGGATGGCATGTTGCTTGATCGTGGAA AGTGTTCATATGCTTCTGACCGCTTCACTCCTGCCACCATTATCGTCTTCTCGATTTTCATCTTAAAAGGTCTCCAAGAT GTCTTCTCGTTCTTCTAA
Protein sequence (LotjaGi6g1v0016900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLRATLKSFRHMVRMNVMIRGFATESVMSCKEKKVGETFGLLRMEPYLVSFKGVIKELCEKERMEEAKEVVREMNRKG LAPDCETYNALICGMCKVRNMLCAVELYDQMRVRGLSPNERTYMSLIDLLCTWWLDKAYKVFNEMIASGFLPSVATYNKF ITAYLSSERVEQALGIFSAMAERGLSPDLVSYNAVISKFCQDGELEKALEIKAETVEKGILPDDVTYSALIQALCLQGSL PEAFDLFLEMLRGDVSPSNSTYTRLMYAYCLVGEFSMAFHLHDEMRHRGFLPDFVIQFSPSLVTFNALIHGLCSLERVDE ALGILRGMPEMGLSPDAVSYNTVLFGFCQIRELKKAYELKVEMDEKIIWLDEYTYESLMEGLSDEVTYSSLLNDYFAQGN MQKVFKLEREMTRNGYLPDSVTLGVFINGLNKKATTSIAKGILLRMISSQCLTMPSYIIYDTLIENCSYVEFKSAVGLVK DFSTRGLVNEAAIAHERMHNMSVKPDGAVYNLLIFDHCRRGNVNKAYEMYKEMVHYGFFPHMFSVLSLIHALYYDRKNSE MGWVIRNTLRSCNLNDSELHQVLNEIEVKKCKIDALLNALAKIAVDGMLLDRGKCSYASDRFTPATIIVFSIFILKGLQD VFSFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 532 | 532 | - | – | |
| Gene3D | 2 | 133 | 132 | 2.6E-21 | ||
| PANTHER | 48 | 131 | 84 | 2.2E-106 | – | |
| PANTHER | 48 | 131 | 84 | 2.2E-106 | – | |
| PANTHER | 48 | 162 | 115 | 2.2E-106 | – | |
| PANTHER | 48 | 162 | 115 | 2.2E-106 | – | |
| ProSiteProfiles | 49 | 83 | 35 | 10.063 | ||
| Pfam | 51 | 81 | 31 | 0.0091 | ||
| TIGRFAM | 52 | 85 | 34 | 1.2E-4 | ||
| Pfam | 83 | 131 | 49 | 4.4E-13 | ||
| ProSiteProfiles | 84 | 118 | 35 | 11.729 | ||
| TIGRFAM | 87 | 120 | 34 | 2.0E-9 | ||
| ProSiteProfiles | 119 | 152 | 34 | 8.133 | ||
| Gene3D | 134 | 239 | 106 | 2.1E-30 | ||
| PANTHER | 136 | 295 | 160 | 2.2E-106 | – | |
| PANTHER | 136 | 295 | 160 | 2.2E-106 | – | |
| ProSiteProfiles | 153 | 187 | 35 | 11.06 | ||
| Pfam | 156 | 185 | 30 | 0.0059 | ||
| TIGRFAM | 156 | 188 | 33 | 2.6E-5 | ||
| Pfam | 187 | 235 | 49 | 7.7E-14 | ||
| ProSiteProfiles | 188 | 222 | 35 | 11.63 | ||
| TIGRFAM | 190 | 223 | 34 | 3.7E-6 | ||
| ProSiteProfiles | 223 | 257 | 35 | 11.762 | ||
| TIGRFAM | 225 | 258 | 34 | 1.9E-6 | ||
| Gene3D | 240 | 384 | 145 | 1.8E-33 | ||
| ProSiteProfiles | 258 | 292 | 35 | 11.279 | ||
| Pfam | 260 | 290 | 31 | 8.0E-5 | ||
| TIGRFAM | 261 | 293 | 33 | 4.4E-7 | ||
| PANTHER | 300 | 467 | 168 | 2.2E-106 | – | |
| Pfam | 300 | 349 | 50 | 1.2E-12 | ||
| PANTHER | 300 | 467 | 168 | 2.2E-106 | – | |
| ProSiteProfiles | 301 | 335 | 35 | 12.134 | ||
| TIGRFAM | 303 | 337 | 35 | 2.7E-8 | ||
| ProSiteProfiles | 336 | 366 | 31 | 8.901 | ||
| ProSiteProfiles | 384 | 418 | 35 | 10.819 | ||
| Pfam | 384 | 431 | 48 | 5.5E-9 | ||
| Gene3D | 385 | 472 | 88 | 2.7E-9 | ||
| ProSiteProfiles | 419 | 453 | 35 | 6.029 | ||
| PANTHER | 459 | 553 | 95 | 2.2E-106 | – | |
| PANTHER | 459 | 553 | 95 | 2.2E-106 | – | |
| ProSiteProfiles | 471 | 505 | 35 | 5.831 | ||
| Gene3D | 473 | 606 | 134 | 1.2E-10 | ||
| Pfam | 502 | 534 | 33 | 1.6E-6 | ||
| ProSiteProfiles | 506 | 540 | 35 | 11.257 | ||
| TIGRFAM | 509 | 540 | 32 | 4.8E-5 | ||
| Phobius | 533 | 553 | 21 | - | – | |
| Phobius | 554 | 645 | 92 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0016900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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