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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0018900 |
| Transcript ID | LotjaGi6g1v0018900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein; TAIR: AT4G33260.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q9S7I8|CDC22_ARATH Cell division cycle 20.2, cofactor of APC complex; TrEMBL-Plants: tr|K7LIT2|K7LIT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0018900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3406526..3410187) extracted from Lotus japonicus Gifu genome v1.2.
AAACAAACACAACTGAGTCTGAGAACAATTAAACCCTCATTCGAATCTTGTTCTTGTTCTTGTTCTTGCTTCTTGTTGGA GAAGGAAGCGATTTCAATTTCAAACTCGTTCAAATGTGGAGTCTTGATCGTGATTGGTACTCTCCCAGAAGCCTTCTCAG TCCTCCAACCCATTACCATTTTCCGGTAACGCACGCACGCAATTTTCCTCACTTTTCGTTTCAATTTTTGTGACTCAAGG GTGATCGGTTCATACCCAACAGGAGCTTGATGGATCTTGATCAAGCCCACACATTGCTCACCAACAGGTTCAACGTAACT CCTCACAACCCATCATTCAGTGTATGTAATTCTACTTCAATTCTCTCTTTCTTTCTTTATTTCTTTCTTTCTTTTCAAGA ATTGGCATGTGTTGATTCTTTATCTCTTATAATAACTTAACAGGAATCGTACAGACAGAAACTGGATGAGACACTCACTT TGGGTTCAGATGGAAAGCCATTTAGGATGTTAGTTTTCAGAGGAAGTTCTAAATCAACTACGAAATCTATTCGTCACATC GATCAGATGCGAGAAGCAGAGGCAGCCGCACTTCAAAACAGTATCAATCAGCCCCGCCCTCGTGCAATGCCTAAGGTGAT TGAATGCATATCTGTCTATTCAAAAAAACTACTTTTATTTGTCATTGGTGTTAACCTTGTTTAAAGTGTTTCTCAATTTT AACTGTTTCAACTGAATGTACTGTCTAAGGTAGCACTATAGCAGTATAAATACTTCAATAATTCATTGCAGTGTGATTGA ATACAGTAGTCAATTTACTTTTTTTGTCTTCTGATTCTGTTTTTCTTGTTTCCTTTTTGTTTGAGATAATGTAACGTTTA TAAGATCATGCAATGCAAGTTTTATCATTTTGTTAGTAAATCCTAAGTTTGCCTCCTGCAATCTGCTTCCTCTTGGAGGA ATCAATGAACAAGCGTTGTAAACTTGTAATGGGTGATGAGAAGAATCATTTATGATTTCTAACCATTTGTATTTTCTTGC TGTACACTGATTTGAAAAACTGAATAACTATGCATGCAGAAGGAGGAGAAGGTCTTGGATGCACCCAATATTAGAAATGA CTACTATTCAAACATTATGGATTGGGGGAAGAACAACATTCTTGCTGTTGCTTTGGGACCAGAAATGTACCTTTGGAACT CCGTGAACAACAATGTACATCGGTTGTTTGAAGCCACTGACAATGATTGTCCCACAAGTGTTGCCTGGTCACAGGATGCC AAACTTTTCGCAGCAGGATTTATGCACTCTAAGCTTCAACTCTGGGATGCTGAGACTTCTAAGCCAGTATGTATCTCTCT ATTTATCTGCTTCTCTAATTATACAATATGAACGTCTGGACTCAATTCCTAGTTTTTAACTTTCAGATAAGAGTGCTAGA AGGTCATCGTCAAAGGATAGGAACCATTGCATGGAGTGGCAATACTTTAACTTCTGGAAGCCATGACAAATCTATAATCA ACCATGATGGTATAGTTCTTTTTAACCCTTTAGATATATTTTGAATACAGAAAGCTATTGATGAAATGAGATGATATAAC ATCTTGCTTTATTATGTTACTGTGTGCAGTTAGAGCAAGAAGAAATGTCATTTCACGGGTAAAAGCACACGGAGCAGAAG TTTGTGGCTTAAAATGGTCCAAAAGGGGAAATATGCTGGCAAGTGGCGGCAATGACAATCATATCTACATATGGGAATCA TCTAAAATGAATTCATCGAGTTTCTTGCATTGTTTTAAGGACCATTCTGCTGCAGTCAAAGCCCTTGCTTGGTGCCCTTA TGATTCAAATGTGCTTGCTTCTGGAGGTGGTACAAATGATAGGTGTATTAAGATATGGAATATTCAAAAAGGAACTTGCA TTCGCAGCATAGATACTACAGCTCAGGTAAGATACTTATTGTTTGTTTTTGGAGAATTAATAATTTCCATTCACCACAAA TAATTAATCACCATTGTTTTAATTGATTACTATTTAGTCTTTTGGACAAATGCATCCATTGTTTACTCTTGCTGAATGAT AGTTTGGCATTATGTGCAGGTTTGTGGATTAGAATGGAATAGGCATCACAAGGAGATATTAAGTGGCCATGGATTTAGCA CAAGTACATCCCACAACGAACTTTGCTTGTGGCGGTATCCAACCATGAATAAAGTGGGAGGCTTGGACCCTCATGCTTCA AGAGTCCTCCATCTATCTCAGGTATATATGCTTCCTATAAGTAAAAACTTTAACAGTTTCTTTACTCCCTCCGGTCCTAT TTATAAGCATGAAAGAGAAGAAAAATCTTGGTCCTTTTTATAAGAACCAAATGAAAGTTTGAGCTATATTAATTAATTTT TTCCAATGATGCCCTTATTAATTCTAACTTGTAAAATGTGTCTCATTAATTATTCTCTCTCTTTTCCACTTTCCAACACT AATAACAAAGGGTAATTTTGGAAGTTCATTTTAATTTAAGACAAATTTAATGCATTTTATCTAGTTTAACTACATTTCTT AAACTATGTGAATTTCTCTCTTCTTTTCCTATCACACCACTCATCATATATCTCACTTCTCTCTCTTTTATTCCAATGTG GTGTGGGGTGGAATTGGGGTGTCAAAGTATTATTTTCCATAACTTAAACTCTAGAACCTGGTCCAATTATAAATATTTAA AGCATGTAATGTAAGGTATGCAATCAGGAAGAGCATCTTATGTAGTACCTGTATTTGTTTGAACACTAGTGCCATATTAT GCTGATGACTCCAATGAATTAATCCATTTAAACTCAATCCTGGCAATTATTTCTTTCAAGTTAACACTAGGTTCTTATCT CTTGCAGAGCCCAGATGGTTTAACAGTGGTGTCAGCTGGGGCAGATGAAACTCTTCGCTTTTGGGATATTTTTGGGCCAC CTGCTACTGATACATCAAAGATCTCACATCTGGATAACCTTTTGTCCCTGAAGATATCCGCATTAAGATAACATTTCCTT TTACGAGCTTGTTTGGTTGCGGACCAAAGAGCACATGTTGGAGCTTATCTAACTCATTTTTTAGTAGCTCCAATAAGTGC TCTTTAGTCCGTATCCAAACGCGCTCTATATATTTTTTCTCATTTTGCTTCCTCACTTTTCACTCTAATTTGTTTTAATT TTTCTGTTTTGTGAAGGGTGATCGTTTCATACCCAACAGCCGTGGGGCTACTAAACTGATATGATCTTGTTGCATGCAGT TGGGAGGAAACGGCCTTTGGAAGTTCTATTGAGCCAGCAGAGGGAGGGTGTTGATTATCATCAAGACAGACAGGCCATTG ACAAGAGACTTTGGCCTATTAGTTTCATTGGATGCTATTATGCATATTATCACAGTTTCCAATTATTAAAGACAATTTGT ATAGATTAGCAGTGACTAGGCATAAATTGCTAATTAGTACTAATGCAAGACATAAATTGCTACCCATCAGTAGCATCATT TGCCTTAACAGCAATTGAAACAGGATGCTTCAATTAGTTAATGATATTCTGTCTGTTATCTTCTGTTTTCGATATCAGTA TGCCATAGTATTATTGGGTTTGTTAAGCTAAGTTGTTACAGATCAGCATGTATGATGTATGG
CDS sequence (LotjaGi6g1v0018900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTGATCAAGCCCACACATTGCTCACCAACAGGTTCAACGTAACTCCTCACAACCCATCATTCAGTGAATCGTA CAGACAGAAACTGGATGAGACACTCACTTTGGGTTCAGATGGAAAGCCATTTAGGATGTTAGTTTTCAGAGGAAGTTCTA AATCAACTACGAAATCTATTCGTCACATCGATCAGATGCGAGAAGCAGAGGCAGCCGCACTTCAAAACAGTATCAATCAG CCCCGCCCTCGTGCAATGCCTAAGAAGGAGGAGAAGGTCTTGGATGCACCCAATATTAGAAATGACTACTATTCAAACAT TATGGATTGGGGGAAGAACAACATTCTTGCTGTTGCTTTGGGACCAGAAATGTACCTTTGGAACTCCGTGAACAACAATG TACATCGGTTGTTTGAAGCCACTGACAATGATTGTCCCACAAGTGTTGCCTGGTCACAGGATGCCAAACTTTTCGCAGCA GGATTTATGCACTCTAAGCTTCAACTCTGGGATGCTGAGACTTCTAAGCCAATAAGAGTGCTAGAAGGTCATCGTCAAAG GATAGGAACCATTGCATGGAGTGGCAATACTTTAACTTCTGGAAGCCATGACAAATCTATAATCAACCATGATGTTAGAG CAAGAAGAAATGTCATTTCACGGGTAAAAGCACACGGAGCAGAAGTTTGTGGCTTAAAATGGTCCAAAAGGGGAAATATG CTGGCAAGTGGCGGCAATGACAATCATATCTACATATGGGAATCATCTAAAATGAATTCATCGAGTTTCTTGCATTGTTT TAAGGACCATTCTGCTGCAGTCAAAGCCCTTGCTTGGTGCCCTTATGATTCAAATGTGCTTGCTTCTGGAGGTGGTACAA ATGATAGGTGTATTAAGATATGGAATATTCAAAAAGGAACTTGCATTCGCAGCATAGATACTACAGCTCAGGTTTGTGGA TTAGAATGGAATAGGCATCACAAGGAGATATTAAGTGGCCATGGATTTAGCACAAGTACATCCCACAACGAACTTTGCTT GTGGCGGTATCCAACCATGAATAAAGTGGGAGGCTTGGACCCTCATGCTTCAAGAGTCCTCCATCTATCTCAGAGCCCAG ATGGTTTAACAGTGGTGTCAGCTGGGGCAGATGAAACTCTTCGCTTTTGGGATATTTTTGGGCCACCTGCTACTGATACA TCAAAGATCTCACATCTGGATAACCTTTTGTCCCTGAAGATATCCGCATTAAGATAA
Protein sequence (LotjaGi6g1v0018900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLDQAHTLLTNRFNVTPHNPSFSESYRQKLDETLTLGSDGKPFRMLVFRGSSKSTTKSIRHIDQMREAEAAALQNSINQ PRPRAMPKKEEKVLDAPNIRNDYYSNIMDWGKNNILAVALGPEMYLWNSVNNNVHRLFEATDNDCPTSVAWSQDAKLFAA GFMHSKLQLWDAETSKPIRVLEGHRQRIGTIAWSGNTLTSGSHDKSIINHDVRARRNVISRVKAHGAEVCGLKWSKRGNM LASGGNDNHIYIWESSKMNSSSFLHCFKDHSAAVKALAWCPYDSNVLASGGGTNDRCIKIWNIQKGTCIRSIDTTAQVCG LEWNRHHKEILSGHGFSTSTSHNELCLWRYPTMNKVGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDT SKISHLDNLLSLKISALR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 403 | 403 | 7.2E-210 | – | |
| PANTHER | 1 | 403 | 403 | 7.2E-210 | ||
| Gene3D | 44 | 394 | 351 | 9.3E-107 | ||
| SUPERFAMILY | 112 | 392 | 281 | 1.43E-57 | ||
| SMART | 131 | 171 | 41 | 1.4 | ||
| Pfam | 133 | 194 | 62 | 2.1E-4 | ||
| ProSiteProfiles | 139 | 400 | 262 | 32.298 | ||
| ProSiteProfiles | 147 | 180 | 34 | 8.737 | ||
| SMART | 174 | 211 | 38 | 0.005 | ||
| SMART | 215 | 254 | 40 | 4.5E-7 | ||
| Pfam | 221 | 253 | 33 | 9.6E-6 | ||
| ProSiteProfiles | 222 | 254 | 33 | 12.915 | ||
| ProSitePatterns | 241 | 255 | 15 | - | ||
| SMART | 260 | 302 | 43 | 1.1E-5 | ||
| Pfam | 263 | 302 | 40 | 3.8E-4 | ||
| ProSitePatterns | 289 | 303 | 15 | - | ||
| SMART | 305 | 349 | 45 | 63.0 | ||
| SMART | 352 | 391 | 40 | 3.3E-4 | ||
| Pfam | 358 | 391 | 34 | 0.003 | ||
| ProSiteProfiles | 359 | 392 | 34 | 12.881 | ||
| ProSitePatterns | 378 | 392 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi6g1v0018900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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