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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0025400 |
| Transcript ID | LotjaGi6g1v0025400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4581421..4586683) extracted from Lotus japonicus Gifu genome v1.2.
TTCACAGCCATGGTCGAAGCTTCAAGGATCATGTACACCACCACTCTTCTTCCTAGCTTCACTCCAACAATTCACAAAAC CCATCTAGGCCACCGTCACCTCACCGTGTCACGCAAGCACCAAGTTCAATGTTCAGTCTCTGCAAGCACAGATGGTGCCA CACGAAGCCGAACCTCAGCCATTCCTTGGGGTTGTGATATGGATTCAGTAGAGAACGCTTCAGCTCTGCAGAAATGGTTG TCGCAGTCAGGGCTTCCACCGCAGAAGATGGGTATAGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCATTGAAGAA TGTTAGGAAAGGGGAGAAGCTTCTCTTTGTGCCTCCCTCACTTGTCATTACTGCTGATTCTGTAAGCCTTTCTTTCTTCT TCCTTTGTCTTAACATAGGTTGATTCAAACCATAAATAAATAAAAATATAAAATAGACAGGTGAGATTGGAATATATTAA GTGAAAAGTATGTTGGAATTGCCACCATCTAAGCCATGTTTAGATATATCTGTTAGCATAAGTAAAAATATCCCTGAAGG ATAGCTCAAGTGGTAAGAGCTAGGGACATAATTGTTGGGTGAGATGAAGGGTGAAAAGTCTTAGGTTCGAACCTGAGAGG ACTAATTTACTAACATTACTAATAACTAACATTTTCTATCAAAAGAAGAAAAAAAGCATAAGTACAAATAGCTCTGTTTG GATTTCTATCGGGTGAATGTGAAAGCACGTTCGCCCAATCCAACAAGTTCAGCCTATGTTTGGTTTTCAGTTTGGAAGTC CGTTTGAGGCAATGGAATTCGAGATTACACGTTCCAATGCACCAAACTTGAAAGAGGCTTTGGACCTCCGTTGGGTGAAA GTACTTTCAAACTGAAAACCAAACAGACACTCATTCTCCTGGGTGAATGTGCATTGGAAGTCGTGAGGTACCAAATGTTG TTTTGGTCATAAGTGCGAATAGATGTTGGTACGCGTTCCAAAGAATTCTAGAAATGAACGCGACATTTTATATGCATTGA AATGAAAGTCTGTTCATTAAACACCACTGGTTATTCAATCCAAGAAAGTTCCTTTACATATGCTTAAAAGTTGAACAAAA CATAAGGGTATTAAGTTCTGCTATATCCTATCATAAGGACGTGTTGAGCGCACATTCCAATGCAGTTTGAATGTACTTTT TGCCAATCCATGTCTCTTGTATTTGTGTCATTAGAGTGAATGTGCTTTTGGCAAATTTGAACGTAAATACAAACATACAC CGATTGATTTCATTCTAAAAGTTCATTTAACTATACAATATTTAGTAGAAGTAAAATATTTATACTCCCTTGTGTTTTCC TTCAAAATATATCTTTAAGAAATTTGCTTATTGCCTGTCAATTATATATGTAGTTATCTACTGTACTGTCTGTGTCAACA GCATTACATTATTCAGTCCACACAAAAATTTGATAAGAACCATCAAACTTGATTTGTATTTTGTATTTGTTACTTTTTTG TCTGGTGTTTTATGGTTCTGTTTGGATTGTGTTGTATGTTTTCTGGTTGTCAGGAGTGGAGCTGCCTAGAAGCTGGTGAA GTTTTGAAAAAGAATTCAGTGCCAGATTGGCCACTGCTTGCAACTTACCTCATTAGTGAAGCTAGCCTCATGAAATCTTC AAGATGGTCAAATTATATATCAGCTTTGCCTCGTCAACCTTACTCACTTCTATACTGGTAAAAGAATTGTTCTTAGAGAT TGTCTAGTAAGAGATTGTCTGAGAAGGATGAGAGAAATGAATATTGATGGGAATCGCAGTTAGGGATTGATATGCTATCT TACTACAAGTGAAAGATAAAATTAGAACATGACATGTATTTAATATTTATGCATTACAAGGCTTCTAAAAGTATAATTTC ATTTTGAAGCTAGAACATGACATGTATTTAGTATTTATGCATTATTCTTCTGGATTTCTGATTTCTTAATTTTTCCCCCT TTATTTTCTTCCTGTCTTAATTTTGGCCTCAATCAGAATATCCCAATCGATTATTTCCATAAAAACTTTTAGGGTCTACT CATATTCACTTCTGTCGTTTCAGGTCACAAGAAGAACTGGATCGCTACTTGGAAGCTTCTCCGATTAGGGAGAGAGCAAT TGAGAGGATTAATAATGTCATTGGAACGTATGGACCAATTGTTTCTACCTTATATTTCTTCAGGGATTTATTGTCTGTTC ATTTCTCTTTTTGGTATATAGCCTCAATCTAATGAGCTTTCTTGATTGAATAATCCTGTCTCTTGCTATAATTAACACAC TTCCCATTTCATCACCAGATACAATGATTTGAGGCTCAGAATATTTTCCAAATACACTGATTTATTCCCTGAAGAGGTAA ATTCCTCCCATTGAGTACAGGATGAAGTTAATAGTTCATGAAAACCAGACTTTTGAAGAAAGAAACGAAAAGTGAATTGC CACAGACATGTAGTAGGACTACATGTTCTTTTGTTTTAATTTCTAAATTTGGTTCTTCCTGATTATGTTGGCGACAATTG GTTTCAATACATAGTATGGCTTTGAAAGTTCCTAACAAGATATTATTTGTCATTTTCTTTTGTAAATATTTGCATTGACA TATTATTGCATTTTAAGCATCTTGTTTCAGTCAGGTGATTATGATCTAAATCGGTTACTTGTAACTTTCAGGTGTTCAAC ATGGAGTCTTTCAAGTGGTCATTCGGCATTCTTTTCTCTCGCATGGTGAGTCAATGTGGTAGATAAAATGAAACAAAATT ATGTTGCCGCCTCTTCTGTTAAACACAAGTCTAGCTACTAAGGATTTCCATCTTGTCTTTGTAATGACATATGAATTCAT AACAGAGCTGATATTGAAAGAAAGTTAAGGTCCAAAACTAAACAAATGATGAAATGTGTCATGTCTGAGAAAACATAGTT CTCAAAATCGCAACATTTCAACACTAATTTAGGGGAGAGTAAATAGTTGTATTTGCGATGTTTGGTTCATAGAAAAATAT CTTTCTTGTTTTTCTGTCTTCGTGTCTGTAGGCATTTCAATCAATTAATTCAATGAGACTTCGTTTTGTTGTTTCATATT TAAGACAAATGGCAGTCTGGCGGGACATATAATTCATAATCTTTTTACCATGTAGGTTCGTTTGCCCTCAATGGATGGAA AGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGATGTATGTTCTCTTCCAAACAAGATTCCTCCATGT TTTTCCTCAGTTATTTTAATTCTAACATGCTTTCAATGGTATAGGTGGAGACATTTTTAGATTATGATAAACAGTCAAAG GGGATTGTCTTTACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTAAACATAAGTTGATGGATTGGAATTTGTTAGAC TAACTGAAGAGAAAACAAACAAGGGCCTAAGAAAATGATATGCAGATTCCTTGTGCCTGCCAAAATGCATTGTATATGCA AGAGTAAAACAACTATGTCTCTACCGTTTTAAAGTTTTCCTCAAAAATAAAATGTTAATTAATTGGAGCTGTGTTTGATG GTATTATTCTTCAGTCTTCACCACTTAGGCCTCGTCATAGTCATTTGATTTAAATCCAGATATCACAATTGATTACTTGC ATCAAATTACACAGGTTTTTATTTCATATGGGAAAAAATCTAATGGGGAGCTTCTGTTATCATATGGATTTGTTACAAGG GAGGGTGCTAATCCTAGTGATTCAGTTGAGTTGTCACTATCACTCAAGAAATCTGATGGGTCCTACAAGGAGAAGTTAGA ACTGCTGAAGAAGTATGGGTTATCAGGGTGAGTACCCAAAATTTCATAATTTTACCTATACATATATGGATGAAGTTCCT CACATTTAGTTCTGATAAAAACAAAATTCAGAAGCATTCCTAGTTAAGAGGTGGTGTACTGGTGTATGGTTCCTAACTTA TTGAACTTAGTTAGTAACTATGTAAAATAGAGCCTTGTAATTTGTCACCAGCAGTGTCACTTTTATGCTAGAGAAGAGGA TTGAGAAGTATGTGATATGGTTGCGTGTTTTAGACTTTTAGTAATAAGTTACACATAATTATAAACAAACTCAATAAGTT ACAAACGGTGTACCTGTATGTTAGATCACAGTAGTTTCATCTAGAAGTGCAGAACAATGCTGATAGCCTGATATATTTCC AAAATATCAATTTCCAAGCTTTGAAAAACAGATAACAGAATGTTACTACCTTCACAACTTTCCATGCTTCAAAATAATTA TATTTACTTGAAACTTATTGGTCCAACAAATTTTAATCCAACTTCTATTTTAACTGATACAGTTTCAATTATCATAATAG CCATGAGTCCATAGCCAATTGTCACTTAACTTCCCTCCTGGTTGATTTAAGATTTTAATCTTCAGGAAGAAAAGATCATT ATTTCCTTTTGGTCGGATTTTCCTTCAAGATATCATTGCGATGTGTACTTTTAGTTGAACTTGAAAATAACTTCAATGCC CTGTCTTTATCAGATCTCAGTGTTTTCCTATCCGAATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTACTTAGCT GTTAGCCCTTCAAGCATGAGAGGACAATTTGAGAAGGTCTGATTCTTACTATATTTGCAAATTACTCTCTGGGTGTTGTA TAACCCTATGAATGGTTCTCTTTCCAGATGGCTGCTGCAGCATCGAATAAAATTACTTCCACTAAGGACTTCAAATATCC TGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAACAAGTTCTTACAGG CAAGGAAAAATTTCGATACAAAATTTCATCCCTTTTCAGTTCACCTTTACAATAGCTATGGTTTTGAAAAACTGAGTTAT CTAGTTGTTAGCTTCAAATGAGATAATCCTACCCTTTGACCTGCATGGTAATCACAGTTATCATGAATGATGCATTTATA TGATTTTTGCAGGCAAGTGGATCACTGGATTTGGATGTGACCTCTCCAAAACAACTCAATCGAAGACTCTTTCTAAAGCA GCTAGCTGTGGACTTGTGTACCAGCGAACGAAGGATATTATACCGTGCTCAATATGTAAGATTATAAAGCACGTTATTTA ATTTACGCATATATTTAAAGTTCATTTCCTAGTGCTGATCTTGATTCCATAGCAGCAGCATAG
CDS sequence (LotjaGi6g1v0025400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCGAAGCTTCAAGGATCATGTACACCACCACTCTTCTTCCTAGCTTCACTCCAACAATTCACAAAACCCATCTAGG CCACCGTCACCTCACCGTGTCACGCAAGCACCAAGTTCAATGTTCAGTCTCTGCAAGCACAGATGGTGCCACACGAAGCC GAACCTCAGCCATTCCTTGGGGTTGTGATATGGATTCAGTAGAGAACGCTTCAGCTCTGCAGAAATGGTTGTCGCAGTCA GGGCTTCCACCGCAGAAGATGGGTATAGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCATTGAAGAATGTTAGGAA AGGGGAGAAGCTTCTCTTTGTGCCTCCCTCACTTGTCATTACTGCTGATTCTGAGTGGAGCTGCCTAGAAGCTGGTGAAG TTTTGAAAAAGAATTCAGTGCCAGATTGGCCACTGCTTGCAACTTACCTCATTAGTGAAGCTAGCCTCATGAAATCTTCA AGATGGTCAAATTATATATCAGCTTTGCCTCGTCAACCTTACTCACTTCTATACTGGTCACAAGAAGAACTGGATCGCTA CTTGGAAGCTTCTCCGATTAGGGAGAGAGCAATTGAGAGGATTAATAATGTCATTGGAACATACAATGATTTGAGGCTCA GAATATTTTCCAAATACACTGATTTATTCCCTGAAGAGGTGTTCAACATGGAGTCTTTCAAGTGGTCATTCGGCATTCTT TTCTCTCGCATGGTTCGTTTGCCCTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTG TGATGTGGAGACATTTTTAGATTATGATAAACAGTCAAAGGGGATTGTCTTTACGACAGATCGGCCCTATCAACCAGGTG AGCAGGTTTTTATTTCATATGGGAAAAAATCTAATGGGGAGCTTCTGTTATCATATGGATTTGTTACAAGGGAGGGTGCT AATCCTAGTGATTCAGTTGAGTTGTCACTATCACTCAAGAAATCTGATGGGTCCTACAAGGAGAAGTTAGAACTGCTGAA GAAGTATGGGTTATCAGGATCTCAGTGTTTTCCTATCCGAATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTACT TAGCTGTTAGCCCTTCAAGCATGAGAGGACAATTTGAGAAGATGGCTGCTGCAGCATCGAATAAAATTACTTCCACTAAG GACTTCAAATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAA CAAGTTCTTACAGGCAAGTGGATCACTGGATTTGGATGTGACCTCTCCAAAACAACTCAATCGAAGACTCTTTCTAAAGC AGCTAGCTGTGGACTTGTGTACCAGCGAACGAAGGATATTATACCGTGCTCAATATGTAAGATTATAA
Protein sequence (LotjaGi6g1v0025400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEASRIMYTTTLLPSFTPTIHKTHLGHRHLTVSRKHQVQCSVSASTDGATRSRTSAIPWGCDMDSVENASALQKWLSQS GLPPQKMGIEKVDVGERGLVALKNVRKGEKLLFVPPSLVITADSEWSCLEAGEVLKKNSVPDWPLLATYLISEASLMKSS RWSNYISALPRQPYSLLYWSQEELDRYLEASPIRERAIERINNVIGTYNDLRLRIFSKYTDLFPEEVFNMESFKWSFGIL FSRMVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKQSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVTREGA NPSDSVELSLSLKKSDGSYKEKLELLKKYGLSGSQCFPIRITGWPLELMAYAYLAVSPSSMRGQFEKMAAAASNKITSTK DFKYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILYRAQYVRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 475 | 472 | 4.4E-151 | ||
| PANTHER | 24 | 473 | 450 | 8.3E-232 | – | |
| PANTHER | 24 | 473 | 450 | 8.3E-232 | – | |
| Gene3D | 31 | 314 | 284 | 5.2E-60 | – | |
| SUPERFAMILY | 69 | 316 | 248 | 2.35E-53 | – | |
| SMART | 85 | 307 | 223 | 1.8E-14 | ||
| ProSiteProfiles | 85 | 301 | 217 | 12.423 | ||
| Pfam | 97 | 301 | 205 | 4.4E-17 | ||
| Gene3D | 318 | 475 | 158 | 3.6E-22 | ||
| SUPERFAMILY | 331 | 472 | 142 | 4.97E-20 | ||
| Pfam | 335 | 467 | 133 | 1.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. | ||
| Molecular function | [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine. |
Expression pattern of LotjaGi6g1v0025400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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