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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0025900 |
| Transcript ID | LotjaGi6g1v0025900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger family protein; TAIR: AT2G04240.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SI09|XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO; TrEMBL-Plants: tr|I3S4J2|I3S4J2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4653445..4655364) extracted from Lotus japonicus Gifu genome v1.2.
ACTCCAACACAACATGAGATGATGAAACTCACATCATATGGAACCTGATAACAAGCTGTTCCTTCTTCTGATACATTTTT CACTTCATCAACATTACACCAATCCTCATACCCTCTTTTGGTAAGTTCCAAAAATGCATTCTTTTTTATCTTTCTCAATT GGGTGTTTAATTTTTTTATCCTAATTTAGCATCTTATCTTGTAGATATATCATTCTTTTGTCCTCTGTTTTTTTTTTTTT GCTTCATAAAGTTTTTGTTTTTGGTAGATTTTGTTGATGAAGAAGCTACTCAATGCTTAAAATTTTACCTTGTTTGGTCA ATTTGCAATCTCAAAACCTTTACATCAAATTACAAGCTGGTTAGGTTTTCAGAAATTGTTGTGCAGTGTGTTGTTTGATT ATGCTTGTTTTCTGTCTTATAGGAAAGACACAGAAAGCATGTTCTTTGTTTTAATTATCTTAGATTTTGGGGATTGGTTC TCTAATTTAGGTTTGTAGGGGTGCATACTTTCACCCTAATTTTCTCTCTATGTTGTAGCTAGTTCATCCTTGGTAAAAAG AGACAGCTTTTCATGTTGAACAACAAATTGAATTTCCCCTTTTACTTTCAATGGAATCATGTGCCTATTTCCTTATCCAA ATTTCTGGTATCTTGGAAATTGTTGTTTCATTCTTCTTCATCCATAATTTATTTTAGTAGGAAACTTGTGAACTATGGAT CCCAAGAAAACCAACTAGTTACTCAGGATTTAAGCGCCTGCAGTCGGGAATCCCTACATTCACCTAGTCAGCTAAAAAAA ATTTGAAGCCATGTCTAGCGTTCGATTTTGATAAAAAAGTATGAGTTGATTGATCTTAATTGTACGGCCCAGATATTGTG AACTCGTGAATGTAGGGTATTCTCGACTCTTCAGGTAACCCAAATCCGATTTAAGCTTGCTCTTTTTGTTCAATCTATGA TTGATTAATCAACATGTGATTTGTTTTTGCAGGTAACACATCAATCAAAAAGGGACTTGCATAGTTTCCACTTTCCATTG GTAAAATTTGACATAGAAATTCTTTCTTCCTATATCCCTTATTTCCTTGCATTGTTGACTATTTTGAGCCACAACATTTG CAACACAATTTGTTTAAGTGACCAAAATGGGCCTATCAAGTCTCCCAGCACCTTCTGAAGGAGTGTTATGTATAATTCTG GTGAACACTGCAATGTCAATATCTATAGTTAAAGCCATTTTTAGGACATTCCTTCACATTGTTGGTATCCATGTTTCATC ACCCTCCCCTCCAACAGAAAACTCCCAAAACCCACCTGATCCATCTGAGTTCCAATATCTCAGTCCCTCAGAGGGTTTCA TTGAAGACTTCAGAAGCAAGACACCAACGCTTAGGTTTGAGAGTGTGTGTAGCAGTTGCAAACAACAACCTGAACATGAG TGTTCAGTGTGTCTCACTAAATTTGAACCAGAATCAGAGATAAACTGTTTACCTTGTGGCCATCTCTTCCATAAAGCATG CTTGGAGAAATGGTTGGACTATTGGAACATTACGTGCCCACTTTGCAGGACTCCCTTAATGCCTGAAGATGATGCATCTT GCTTTTGGTAAGCAATGAGTGATCATGCTAAATAGAATAAGAGAGTTTAATGTACAGTGTAGGGTGTACATATTTGTGAC AATTTTGATGTTCTCATGGAGCTGACTTATAGAGTCAATTTAACCTTTTGCTCTTTATGATGTAGAGCTTGTAGAGGGTT TTGTTCTTAGTTTCTCTGTACCTGGTGGATATAATTTCTGGTTGGTTAGTTGTGTTTGATTCTGGTAAGTAGACATTGTA GCAATACACGTGGGATTCAAGTGAGAGGATTTCATGTTCAGTTGTTTACCGATTAGTGTGAATATCTACGGTAAGGGAGT
CDS sequence (LotjaGi6g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCCTATCAAGTCTCCCAGCACCTTCTGAAGGAGTGTTATGTATAATTCTGGTGAACACTGCAATGTCAATATCTAT AGTTAAAGCCATTTTTAGGACATTCCTTCACATTGTTGGTATCCATGTTTCATCACCCTCCCCTCCAACAGAAAACTCCC AAAACCCACCTGATCCATCTGAGTTCCAATATCTCAGTCCCTCAGAGGGTTTCATTGAAGACTTCAGAAGCAAGACACCA ACGCTTAGGTTTGAGAGTGTGTGTAGCAGTTGCAAACAACAACCTGAACATGAGTGTTCAGTGTGTCTCACTAAATTTGA ACCAGAATCAGAGATAAACTGTTTACCTTGTGGCCATCTCTTCCATAAAGCATGCTTGGAGAAATGGTTGGACTATTGGA ACATTACGTGCCCACTTTGCAGGACTCCCTTAATGCCTGAAGATGATGCATCTTGCTTTTGGTAA
Protein sequence (LotjaGi6g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSSLPAPSEGVLCIILVNTAMSISIVKAIFRTFLHIVGIHVSSPSPPTENSQNPPDPSEFQYLSPSEGFIEDFRSKTP TLRFESVCSSCKQQPEHECSVCLTKFEPESEINCLPCGHLFHKACLEKWLDYWNITCPLCRTPLMPEDDASCFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 153 | 153 | 1.7E-65 | – | |
| PANTHER | 1 | 153 | 153 | 1.7E-65 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 154 | 122 | - | – | |
| Gene3D | 75 | 150 | 76 | 1.2E-16 | ||
| ProSitePatterns | 88 | 140 | 53 | - | ||
| SUPERFAMILY | 90 | 146 | 57 | 3.53E-18 | – | |
| Pfam | 98 | 141 | 44 | 2.3E-11 | ||
| SMART | 98 | 141 | 44 | 0.004 | ||
| SMART | 99 | 140 | 42 | 8.7E-7 | ||
| ProSiteProfiles | 99 | 141 | 43 | 13.315 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0025900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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