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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0026900 |
| Transcript ID | LotjaGi6g1v0026900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD-finger protein; TAIR: AT5G03780.1 TRF-like 10; Swiss-Prot: sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3; TrEMBL-Plants: tr|A0A061DNH4|A0A061DNH4_THECC Uncharacterized protein isoform 2; Found in the gene: LotjaGi6g1v0026900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4734254..4741257) extracted from Lotus japonicus Gifu genome v1.2.
TGGAAATAAATTTTGGAAGTCTGCACTGTCATATCGGAAATTCATTTTCCATTACGATATCGGAAAATCATTTTCCATTA TCATATCGGAATTTGATTTTCCGATATTACAGTGAACCCAGAAACAGACCCAAATGCACCCCACTCGTGCCCGTACTCAT TTCATGGAATTTCAGGCAACAAAACACAACAAAACCTACCTCTAATCATCAATCAACTACCCTAGTGTTCAACCATTGAC CTAATTCAAACTTGAAATGTGAAAATCATTGAAATCAAAACTTACCTTTTGAATGTAATGGAATGGGTCTTTGTGGGAGC TTTGATGATGATTAGAACCGACCTTTGAGATGATTGAAGTGGTGGAACCGAGCTTTGAGAGAGATTGAAGAGGGTGTGAT TTGGGGAGAGAAATTTGGGTTTTGAAAATAATGGGTTTTAAAACCCAAACTGTCAAGTTTATATGTCACGATCGGTAAAT GATTACCCGTTATAGTGTCGGGTAATCATTTACCGTTATTAATCCTGGTTTTTTAGTAATTTCGCCCCTTCAGGTGGGGC GTGGGGCCTAAGGGGTGGGGTGTTAAACCCAAATCCCGTCACACTCTCTGGGGGATTGGGGTTTGTAATCGGAAGTGATG AGGGAAAAACACATTGGCGCGCGTAGGCCATCACCAAACCCTTCTGCAACCGTTCCTTCCCCCTCTTCCATTCCTCTCCT CTCAACCGTTAACCAGGACCAACACACCGCAACCGTCTTCGACAGCGACGGCGACGACAACGTTCCGATGACGCCCGATC ACCGTCCCGAACCCGAACCTGTAGACCTATTTGACGAGGACATTTGCATCGGTTGCGATCAAAGCGAGGGGACATTGTTG GTTTGCAGCGAGAAGGGTTGCCCCATTGCAATCCACGCCAGCTGCATCGGTTCCGAACCCAAATTCGATGCTTCTGGAAG CTTCTACTGCCCTTATTGCTGGTACAAGCGCGCAGTTAATGACTGTCGACAGTTGAGGCAAAAGGCCATGATGGCCAAGG AAGCTCTCACAAGCTTTCTCGATAGTAAACCCCAATTAGTGCGTCAAGATGATGGCGAGGAGCACGTTGCTGAACCGGGA GTGCCTCCGGTTCCGGCTCAGGATATGAGCCGGGAGGAACCGGTAACTGTACCGGAAACGGGTGAAACTGGAGGTTTGGA AGGGATAGAACGCTGTGAGGAGCACATTGCTGAACCGGGAATCCCTCCGGGTCAGGACCTGAATAGGGAGGAACCGGAAA CTGCATCAGGAAGGCGTGAAATTGGAGGTTTGGAAGGAATAGAACGCTGTGAGGAGCACGTTGCTGAACCGGGAGTTCCT CCGGCTCAGGACTTGAATTGGGAGGAACCGGAAACTGCACCGGGAAGGCGTGAAACGAGGGGTTTGGAAGGAATAGAACG CTGTGAAACTGCACGTGAAGAGGAAGGAAAGGAGTCTTCCACGGGTAGTTTCATGAGTGAGACTAATGATTCGGATTATG ATGCCAGTTTGGTGAAGAAACGCCGGGCTAAACGGAAGGTTGCTGCCGTGAAGAAGTCATTAATGGAGAGTAATGTAGGT GATGAGAATGGGGAAGTTAGCAGTACCGGAACTTCAAGGAAGCCTAAGCAACAAGTGTGAGTCACTCATCATCATGTTTT TCATTTTGAGGAAAGCTAGACAAACTTGTTGACATGTTCAATTTCTTATAGAGACAGCATATGCAGAGTAAATTAATTAA TTAACTTTTAAAACTAGGTTGATTGTCTTATTTTGAAAATAAGTTTGTTGGTAATATTCCTCCTTAATGTTTTAAATTGC AATTGTGGTTACAATTGATGTTGCATTGCAGCCTAATTACAGTTGTTTGCAGTATGTAGTTTTTGAATAGTCATAGGTGA TTAAATGAATGTCTTATTTTCTCAACTGAGCACTGATAAGTGATAACTATTCTTTTAATGGAGAATTGCTTTTCTAAAGC TATGTAAATCAGTTAAATCTTTGGCTAATGGTTCTTGATTGCAGCAGGAACCGGATTTTGCTGACTGGAAAGCGAAGAAG GAGATTATATTGGACAGATGACGAAGAAAAAGCTCTCAAGGTATAAGTTTTGTTGTAAGATATATCTTTCTATAGCTGAC TGAATTGTTGATATCATGCTCTGACAATGTCAGATAGATTCAAACTTCAAATCAGTTTTGACTTCAGATATATAACCGTA GTTGAAAATAAAATGATATGTGCCTCCTTTTTTGAGTTATGAATGTGAGTTCATTAGAAGCAGACATGTCTGCATTCCAT GATTAAGAGTCTGAGTGTGTTTGGAAAATGTTTGAGGGGATGCAAACATATGCTTTGACTTGTGAGTTCCAAGAAGGAAA ATGTAGAAGTAAGATTTTGTTTCATTTACCTAGAGGTTCATTTACGTTCAACTCAATTGTTTCTCAAACACACTAAATCA AGAGCATAATCATTTTATGAAAGAAAGTTGGTACTAAATATAACTTACAATGAGATGAGTTGCTAATTTATGTTTTTCAA TACATTTTTAAGATATAAGACTGAAAAAAAAGAAGTCTTAGTTAGGTTATTCATGCAACAACATTGAAGAGGGGTTTGAC ATAGGTTGCTCATCAATTAAGCTGAAGGAGGGATGTTGTAGTTCAGCCAAAAAGGATTAGGATTCTTTTAAGTGAGGGAT TCACTTTGGAGGAAAAAATAAGGAATTACTGTCAATTGTTGTTAAGATTGTGGTTATATGCATACATATGAAGTTTTTTA AATTGAAACCATTGAAATTTCAACCAATGACCATAACTCCTTATTTTCCCTCCAAAGGATCCCTAGATTTAAGTCCTAGA ATTCATAATAGGATAGTTATGCGATAGTTTTTTAATTGTAGTTATGTGGTAAGACAATTATGCAGTAGTTGTTTAATTGT GTATTATGCAGTAGTTTCTGAACCTCAGTTTTAAAGCACAATCAATTATGTAGTGTTTTCAATTGATCTATTCTAGAATA TAAATATTTTCATCTTAGATATTATAACTGCATGAGGCCTTTATCAGCTAAAACAGTTCTTAAATACTGATTGCCTAAAT AATTGTCATGTAGTTAAGTCTTCAGAACATTACAGTTGACCGTACTATCATAGTTAAACACTTAATCTAAAACGTGGAGA CTAATTTAAACTAGCGCTTTTTTTTTTCCAGTGTGTCCAGATTAGATGTACATGGCTGCCTTTGGCACACAACCCAATTT ATTACCTCTAATTTCTAATTGATTTGGATGACATATTTATTACAGCCAGAAAAATGCAACGTCCATCTCTTCTCATACGT CCTATGTATCTTGGATTTCTTTTTCCTAATTTCCCATGTAAATATTTGGGATATTTTGAACAATTTCCAACTTTGTGATA AACATTTTAAGCTTCTGAAAAAATTGTTCTGAACTTTAAAATTGTAGAGCACATAATCAATTATGGAATGTTTTCAATTG ATGAAGGTATTAGTATTTATCTTATATATTATAACTGCACAAGGCCTTTATTTCTTTGTTAATAGCATTATCTTTGGTTC TTGCATAGCAGGAAGGAGTGTTAAAGTTCTCATTGGAAAATCAGAATATCCCTTGGAGGAAAATCTTAGAATTTGGTTGT GGTACATTTGATAAGACTCGTGCTCCTTCTGATCTCAAAGATAAATGGAAGAAAATGATCTCCAAGCAAGGTAAATTTAC CCGTTGTAGTTATTTTATTATTATTTATAATAAGTGAATTTTTGGTATGTATTGCATTCGTGTTCTTTCTTGTATGCTCT TGAAACTTTCAGTTTTCTTCTGCAAAGTAGCTTATAGGAAATTTTATGGACAAAATATATGAAAGAATTCTTCAAATAGA AATTATGGCTAATTCTTTTCATCTCCCTTTGGTAAGGGTTATTCCAATATTCTCTTAGATAAATTGTTCCTAATCTTATC TTTGCTTATATGTCCACTCATCCATCTTACTATTCTGATCTATGTTACACTTTTTGCTCTTGTTTGCATATGACTGTCCA ACACAAACTTACACTGCCATAAAGCATCTTTTGGTCCTGTTAACACTTGACAGGATTAGTTCTCATGGCTAGCTACTTAC TACCATAGTTGTTAATAGTGTGCTACAGTAGCACTATCACAGTGGAGCATTTTCTTTTTCTTCAAGGTCACATTGTAAGA CCACATCTGTTGCTATAGCAGCTGAAATCGTGGAAAATTGCTGTTGAGGACCCAACTTTGATGCTCGTGTATAAACTTTT TTTCCTAGGTATGAATGTTACGGGAGAGTGAGTTTTTTTTTTCTCGAGGATAAAAATGGGATTCTGTAGTGCTTTGTCCA AAGATAAGGTTTCGAAAGCCTTGTTATGTTCTCATATACAAAAGCACACGCCTTTTTCCTTCTCTTTGGATGAAAATCCT CTGGCCCACTGCTCGCTGATGTCTTTCTGGCCAAATAACTGTTTTCCAGCCAACTCCTGCATTTCCAAGCCAGGCCCTGC CACTCATCTGCTTTGTTCTCGTTCAGGTCTTCTGTTCTGCATCCTTATATTCTGATCTTCTTTCTTCTATTCTTGTTTTC ATCCATTCCTAAAAACCTATGGGTTTTGAATATTAGTTATGATTATGATGATACATATATCTTTAATGTTGATTTTTCTT GAGTTTTTATATATTTGTAATAAATACATTATTTAACGTGTGTAAATTTTAATTAGTAGTGGTCCCCCTAATTTTCTATC CCACAAAAGTTATTTTAATGTTGGCCACTACACCCCCACTATCATGGATTGATAACTGTGGTTGCTGCCTATAGGGTTGT ATTGTGCGCTATAGCAGCGCATAGCTGTCCGTGGACACTTTATATACATTGTTTCGTAATCCTAGTCAAACTAAATAGGG AAACAAACTAACAAACTATAAGGCAACAAGGAAAAATAACAATTATCTCCAATCCTAACAGAATTATCTCAATAAACTAA ATCCTTACTGATATCTCAACCAGGGTTGTTAATGGCGGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCGAG CGCTATTGCGGCGCTATAGCGGAAAATAGCGCAAATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCCAGGCCGCTACGC TACAGGCTATTGCGCCGCTATAGTGCGCTATTAACAAGCCTGATCTCAACACAGAAGTTGGGCCCATTTTCCCTATTGGG TCGGGTCCATCATTCTCTAGGTAACTTCAAGCCCAAAGTAATGATCTTGACTCTCTATTTGCTGTGCCCTTACACTTTAT TAGGTAAATTGATTATAACATACCTTCACCTTGTGGACAAGGTGAATACCTTCCCTGTTTAGTTAGTAGCTTAGTTAGTT AGTTATAGGGAGGGAAATATTATAAATAACATTGAGTTAGTGAGGGATTTCAACTTCGGGAGCATTGTAAGGCAAACTTG GGAGAGCCCTACCAACATTGATTCCCAATGCTGATGTGAGGGCTCTGGTGGTGCATGATTGTCAGTACCTCTGCATGGGA CTTGTAGTCCCGGAGGCATGCCATTACCAGTGGTGGTGACTAAAGCTGAACCTACCCAAACTTTTTTCTGCAAAAGAACT TGGGAGATCCCTAGATCTCTTGAATATCATGGAATTCATTGTAGTTTCATAGCTTTCTTTCAATAAAATAGTCTTCTTCC TATGTTGTTAAACGCTACGTAATCGCGTCGTGACCACTCACTGCGACGGTGTGTCCCATCATGGTTCACTTCATTGTCAC GTCTGTATGCTGATTTTACAAATTTTTGCGTAAGATAGTGGCGTGACAGGGAAGGCCAGCTGAACTTACCAAAATGCCCT TCACTTGAAATGTTATTAATGTTTGAACAGTATTAGAACAATCATAGGGTGTGATTGATAGGATTAGAAGGTGAGAGTTG AATTGAAACTGAGGAATGTAGTTGGAAATTGGCATACATTCTACCCAAATATTTGCTAATTATTCTCTCCATTTTTCTCT ATCATTTACCAAGCACACCATCGTCTTTGAGCCCAGTAATGAAAGAAGCAATGAAGTTAGAGAATTTATTTACACATTTC GGTTAAGTATAGCCATTAGACTAGGACATTGATATCTATGAACTCGTTTTAGGTTATTTGAAATAATAACTGATGTTTTG TTGTGCAGGATGCAAGTAGAACCGGTGCATATATATATCCTTCTCAGAATAACTCTCTGTGGAAACCTGGTTTCTTACAT GTAACTGAGTGTCTTTGGTCTTAGTAATATATATTTTAGCAAAATGTGGGGCAAGGATAGAAGGTTCTAATGAAATCTAA TGACCATGCATGTAATTTAGTTCTATGTATATAATTGCTGTCACCAGTTATTTGAGTTTACCTTGCCTAGGGTAATTGTA AAACCAGGATAGTTATGTGACCAGATGTTATATCATTGCCAATGGCAGTGAGGGCAAAAAATTGTATGCAGAGTTTGGCG AAAGACATTTGCAAAGTCATTGTTGACACCTTGGAGTTTTTTCAAGTTAGAAGGGAGATATGTGGCTAGTGATGTGATGG AAAATGAATAATAAGATACAGAGAAATGTAATTAAGGTAAAATAAAGGTGTCAAAAATTAATGTTGGAATGTTCACATGA ATCATCCTATTATCCATTTCTTACTTACTATTCATATTAAAAAAAAAGGAATACAGTACTTGCTGTTGGAGATAAGGAAA GTGAAGTATAAATTGCCGTGCATATAAACGGAGTATTAAGCATTAGACAGGAAAGGTAGACGGTAAAAGTAAAAAACTAA CTTTTCATATTTTCAATATAAAAAAGCTGAAAAATTAGACAGGAAACCGTAACAAGAATGAAAAAGAATTCATGGAATGA TGGGGAAAAAATATAAGACAGTAAATGAACAATGCTACATGATC
CDS sequence (LotjaGi6g1v0026900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGAAAAACACATTGGCGCGCGTAGGCCATCACCAAACCCTTCTGCAACCGTTCCTTCCCCCTCTTCCATTCCTCT CCTCTCAACCGTTAACCAGGACCAACACACCGCAACCGTCTTCGACAGCGACGGCGACGACAACGTTCCGATGACGCCCG ATCACCGTCCCGAACCCGAACCTGTAGACCTATTTGACGAGGACATTTGCATCGGTTGCGATCAAAGCGAGGGGACATTG TTGGTTTGCAGCGAGAAGGGTTGCCCCATTGCAATCCACGCCAGCTGCATCGGTTCCGAACCCAAATTCGATGCTTCTGG AAGCTTCTACTGCCCTTATTGCTGGTACAAGCGCGCAGTTAATGACTGTCGACAGTTGAGGCAAAAGGCCATGATGGCCA AGGAAGCTCTCACAAGCTTTCTCGATAGTAAACCCCAATTAGTGCGTCAAGATGATGGCGAGGAGCACGTTGCTGAACCG GGAGTGCCTCCGGTTCCGGCTCAGGATATGAGCCGGGAGGAACCGGTAACTGTACCGGAAACGGGTGAAACTGGAGGTTT GGAAGGGATAGAACGCTGTGAGGAGCACATTGCTGAACCGGGAATCCCTCCGGGTCAGGACCTGAATAGGGAGGAACCGG AAACTGCATCAGGAAGGCGTGAAATTGGAGGTTTGGAAGGAATAGAACGCTGTGAGGAGCACGTTGCTGAACCGGGAGTT CCTCCGGCTCAGGACTTGAATTGGGAGGAACCGGAAACTGCACCGGGAAGGCGTGAAACGAGGGGTTTGGAAGGAATAGA ACGCTGTGAAACTGCACGTGAAGAGGAAGGAAAGGAGTCTTCCACGGGTAGTTTCATGAGTGAGACTAATGATTCGGATT ATGATGCCAGTTTGGTGAAGAAACGCCGGGCTAAACGGAAGGTTGCTGCCGTGAAGAAGTCATTAATGGAGAGTAATGTA GGTGATGAGAATGGGGAAGTTAGCAGTACCGGAACTTCAAGGAAGCCTAAGCAACAAGTGAACCGGATTTTGCTGACTGG AAAGCGAAGAAGGAGATTATATTGGACAGATGACGAAGAAAAAGCTCTCAAGGAAGGAGTGTTAAAGTTCTCATTGGAAA ATCAGAATATCCCTTGGAGGAAAATCTTAGAATTTGGTTGTGGTACATTTGATAAGACTCGTGCTCCTTCTGATCTCAAA GATAAATGGAAGAAAATGATCTCCAAGCAAGGATGCAAGTAG
Protein sequence (LotjaGi6g1v0026900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREKHIGARRPSPNPSATVPSPSSIPLLSTVNQDQHTATVFDSDGDDNVPMTPDHRPEPEPVDLFDEDICIGCDQSEGTL LVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQLRQKAMMAKEALTSFLDSKPQLVRQDDGEEHVAEP GVPPVPAQDMSREEPVTVPETGETGGLEGIERCEEHIAEPGIPPGQDLNREEPETASGRREIGGLEGIERCEEHVAEPGV PPAQDLNWEEPETAPGRRETRGLEGIERCETAREEEGKESSTGSFMSETNDSDYDASLVKKRRAKRKVAAVKKSLMESNV GDENGEVSSTGTSRKPKQQVNRILLTGKRRRRLYWTDDEEKALKEGVLKFSLENQNIPWRKILEFGCGTFDKTRAPSDLK DKWKKMISKQGCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 54 | 54 | - | – | |
| MobiDBLite | 21 | 39 | 19 | - | – | |
| PANTHER | 39 | 413 | 375 | 4.0E-79 | – | |
| PANTHER | 39 | 413 | 375 | 4.0E-79 | – | |
| Gene3D | 64 | 137 | 74 | 9.0E-8 | ||
| SUPERFAMILY | 66 | 120 | 55 | 3.54E-8 | ||
| SMART | 69 | 115 | 47 | 2.7E-4 | ||
| Coils | 116 | 136 | 21 | - | – | |
| MobiDBLite | 149 | 186 | 38 | - | – | |
| MobiDBLite | 198 | 222 | 25 | - | – | |
| MobiDBLite | 236 | 304 | 69 | - | – | |
| MobiDBLite | 251 | 281 | 31 | - | – | |
| MobiDBLite | 318 | 338 | 21 | - | – | |
| MobiDBLite | 321 | 338 | 18 | - | – | |
| Gene3D | 335 | 413 | 79 | 7.0E-14 | – | |
| ProSiteProfiles | 347 | 407 | 61 | 7.178 | ||
| SUPERFAMILY | 349 | 407 | 59 | 5.72E-7 | ||
| CDD | 355 | 407 | 53 | 8.62865E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0026900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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