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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0029400 |
| Transcript ID | LotjaGi6g1v0029400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G60580.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|A0A0S3S866|A0A0S3S866_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0029400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5186632..5193706) extracted from Lotus japonicus Gifu genome v1.2.
GGAATACTAGAGAATAATGGTCGAAGCAAGTTGGCGGGTGATGATAATGGTCACCACAATTTTTAAAATAATATTGCCAG CTTCATTTATTAAAGCACTGTTACCATCATTTCCCTTTCCTCTTCTCTTCTCTTTACTAATAACAATATTGTCATTCTCT TTGATCGATGCTGTCTAAGCTTAGCTCAGTGTTGGCCATTTTTGTCTCAATCTTATTCTTGATATTATCTTAATCTGGCT TTGATGGACAAGGCAGGTGCTGAAGTTCAAAATGATGCTTCTAGTTCAATGGTGTCTGCAGATCTTGCTCTTCTTCATCA CCAGGTAAAATCTCAATGCTGTGCTGCAACCCTTTTGGCTGTAGCATGGTTTTTCTTCAGATCAAATGAGTTTCCATTTT GTCTGAGCAACAGGGTTGAAGATTATGAAAATTTCAATCTTTTAGCATCTGGGTAAACAGGAAGTTCACTTTTTTATTTG TTTTCTCTCTCTATGGAGAAAAAAAGTTGTCCTTTTACATTTTTTTTTCCAGTTTTTTTGTGTTTTTTTTCCTACCAAAT TCCAATGAACTTGCTTTGATGGTTTCTTAGACATGTGGTGGAAATGGAGAAGATGACCAAACCTCCTTGATTGCTCAGTC CAGAAAACCTAGTCTGTCTTCTCTGCAAATACCAGCAAGGTCAATAGAAAGTGCATTATCTTCTTTTACTAGGACAGATG GTCCCACATTGTCAAGTCCAGGTTCCACTAGAGGACTTCCCCCAAGGCCAAATTCTGCAAAAGTCAAGTCCTCTATGAGA AATTTACTTTCGGCGAGGAGCTTTCGGGCGAAAACTAGTTCACAAGATTGTGAAAGGAAAGTTCTTATTGTTCCTGACAC TTTGCCATCAGATGGCGGTGCTCTGGATCATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGGTTGTGTTCCCTG CATCAACAAAAGCAGCACATTCGTTGCCGGTTACTCCAAGTGAAAATTCAGGTGGAGAGAATGTAGATGGAAGACATCCA AGGAGTGATTCTGATTTTAGTGTAGGTTTCTGCTGTTCATTCTTGATTCGTGATCACTGCATCTATGGAAGTCACTGTTT TTCTGCATTTCTTTTTATATGAAAATGACTTGTGATTCTTAAAATATGCAACATTAATTAATGTTTTCGTTTTGTACAGA AAATGAAAGTTAATCAACATATGACTCGATCATTTTCAGTTCCGGTTAATGTTCAAACCACTATTTCAAAGCCTACAGAT TCTAGGCGCCTGATTCGTGTAATTTCAGCTAGACCAAATCTACCAACTATTGATGACATTTCAAGTCACAATACTTCAGT TTCAGATATTGGTAAGTCACTCTTCATTATATAGGGGACATAAATTACTTTCTTCAACGTATCTCGTTTAAATTTCTTGA TCAAAGAATATGGTTAATCAGAAACTGTCAGTTGTTTTGGCACGCAACAATTTTTTAATATCAGGCACTGAACCATACAT AAAAGGTCACAATGAGAATGCATTGTTTAAAAGACTCTGAAGAGGAAAGATAAGATAGAAGTTATTATTTATCACCTCAT TTTCTGTCCTTGTCATCAAGGCAGTGAAACTATTCTTTGTATTTTGTTACACCTAGCTTAATTGGATCTATAAATTAGGG ATGGCTTCAAAGTACATAAATTTTTTGGATGGTATCTTTTTAGCACCACCCTTTTTTCAACCAACACCTCCCCACTCGTT CTGGAAATTAATTTACCGAAGCATAATTGGATGGTGTGGTAGAACCATACTGGTGCTAAAAGTAATCCCCAATGTTTTGA AGGACATCCTTAACCTATTAGCATCCCCCCCTAGAGCCTTTTGCAAGCCGTAAGTTTGTTGTTGTGCCTTCTTATAAACT TAAGTTCTGATTGTAAGTTAAAGTTATACGTAAGCAAAGACGAGTATGCTATGGATCATATTTTCTTTCGTTATATTGTA AAGCAAGTTTTAATTAAAATAAAACATGTATTAAGAAAATTAGACCAAACCATGAAGAAAGTCAGTTTATGTCCTTCCCA ATTGACACACATAGGGAAGCATTAATCAAACATTGTTAAGTATTTGAAGAAAGCTCTGGGAAAGTGTATTATACAAGGAT CATGGACACATGCAGGTGGAGGCTTTTTCAGATGCTAATTAGGCGGGGTTCCCTATGGATCAACTATTCACAGCATATTG TGTTTATCGTGGAAAAGTAAGAACTAAAATGTGGTGGCATGATCAAGTTACAAGTTGAAATGCTGAATACTAGGCTATGA TTCAAACTATTTGTTAACTTATGTGGGTAGATCATTTCTTGGGCAAGATGGGATTTGAGAGCGCATCCACAGTAAAATTG TGGTGTAATAACCAGGCTGTCATACATATTTCATGAAATCATGTCTTTATGAAAAAAGTAAATATATTGAGATGAGTTAT CACTTCATCTAAGAAAAGCTTCAATAAAATTTATATAGGGCTGTCATAATCAGCCCAGACCAATGTAAGGAAGGAAAAAC CAACTCAATCAGTACTAAAATCTATCTCCTATAATCTGATTCAGAATCAGATTTTATTAATCTTGTCCTAATACAAATTT AATTACAATATCAGAAAATATCAATCTAATGCTTACTCTAATAACTCACTGATTAAAACATTGTATAGTGTCTTTCTTTT TATTTTGGATTCAAGGTTTGTATACTGTCAGTGTAAATTTTCTTTAGATAGACTTCCAATTGATTTCCGCCAAATCAGTA AATACATTTTTATTTTAATTAAAATTAAAAATGAAGGTAATTGTTTCTCCTACATACCGTTATATGATTGGATGTCAGTG TAAAACTGGTGCATCATAATGAAACCATTTTATTTTTATCTTACATTATTTTGTTGTCTTTATATTTGCATTATCAATGA TAACTACTTTGAACTTCAGAAATAATATACTTAGTAATTTTTTTGCTTAAAAGTTTACTTACTATATCATTGTCCTTGGT TATCTTGTTAGCCCCAATCTCATATTCCTTCTCCTCTTTATGCGTTTTGTCACTTTGTTTCCTTTCCAGTCATTGAAGAT GCTTCTGAGGATATTCCTGAGGAAGAAGCAGTCTGTAGGATTTGTTTTGTAGAGCTTGGGGAAGGAGGGAATACTCTTAG GATGGATTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATA AGACCTGTGATGTCTGCAAGCAGGATGTCCGAAACCTTCCAGTAACGCTCTTGAAAATTTCTAATCCTGTAACTGTTGCT TGGCAGCCATTGAATGTACCACAGCAGAGAGAAGTTACTTCCTACAGGTAAGTTTAATTGTTTCCAGTCATGTGCTAATC ATTCTTTGTGTTTCATTTCCCTCTGAAACTAACATGTAAGATACCTACAATGTTCTTGTTGTGCTTATTTGTAGGACTAT AAGTTCAAAGACCAACAAGTTTCATACTTTATTTTATTTTATGCTGATACTAAGTCTTGTCTTAATATTGCATATGTCTG ATCTGGGGCTGTTCAGAACTAACTTTATGCATTCAAACCTTGAAAAATTAATGTATTTAATGAAGAGAAACTGCTCCAAC CTATGGAGGAAAACCCAATATTCATAGAACAAGTCAAAATGACTTATCCTTATGTAATTGGCTGCTAGGCTGTGTAACAA ACTTGAAATTATAGAGTGTGCTAAATTGTGTGTCATTTGAAGAGTTGTGGCATCTCAAGCCCAATAGAAGTGAGTGACTC TTTAAGCATGTGTGAGTGATCACTTGTGTAAATTTGTGCATAAAGCAAGATAGAAGATGTGAATCCGATAACTTCTCCCT CATTGGCCACTCCATCCAAGTTTCGACCATTGAGAGTCAACAAAAAAAACGGGACAATGGGTTGATGCAAGTTGATGATA CAGGTAGGGTGACAGGGTGTTTATGTATGTGATACGAGTAGGGGTTTTGAATTTTAACAATAAATCAAAATGATGTAGTT TTGGTTATGTATATGCACAATGAGTACCCAATTTTTGTTTGAGAAGTTATTTCGATACGTATCCGATGCATACCTACGAA TACCCAACGCGTACAGGGCATGTACTGCTGCAAGAGAAGAATGCCCATGATTTAGAGATTCTGAATTTGAATGTCTCATG TCTCGCAATTATCAGTAGACAGTGCTTTGTTAGGTCTACATACTTGTGACAAATCACTAGACAATCACGGTCGTTCTAAT TTTAGTTTACTCTACAGGATCTGGCAGGATGTACCAGTACTCGTCTTGGTCAGCATGCTGGCATACTTTTGCTTTCTAGA GGAACTATTGGTAGGCTTACCTTGTCAACACTATGACAAAAAATGTTAGACCATTTTACTTGCATATTATAAATAAAATG ATCTGAAGCGGGCAGTCACTACGTGGGAGCTGATTCAAAATTATATGGTTGAACTGACAATTGAACAACTGGCATAGCTA TAGTTTCATATGGACCCTTTGAACTACTGGCATTACTATAATTTTATTAATATGTTTTGAACGTAACATTTTGAAAAGTG ATTACAATTTTTTAAGGTCAGACATGTAAATCCCCAAAACTAGATTGCTCTTAATTTTATGATCAATTCCATTATTAGCT TGCTTGGAATTGGCCCCATGTATGTCTGCTTCACTAATTGGACAAAGAAAGGGTTGGTGGAGTAAATTTCATAGATAAGG TCTCAAGTGCTGTTTGTTGCTGCTGAGTATAAATAGGATGAATCAGAATGAAATGAACAAATAGAAACACTAGATAGAAT ACTTGAAAGGGACAGACGGCATGAATGTGACTTGGAAGATTTATGAAAAATGTATCAGTGTGGACCTATCAATAATATGT AAAATTGCAAATGATTAACTAATTTTAGGAAGGTATTTTTCTCCATTTTGCAACTTTTATCCAAGTCACTTTAATGAATT ATGCCATGCCGTACTTTGTTGCTCATAAGTGAGTTTATTTTTGGGAGAAAATGAGATAATGTTTCTTTGAATATTTCGTT ACTAGAAGGCCATCTTATTAATGTTGTTTATATGAAAAGTGCAGTATAATGTTATATACTCCTCTTGTTAATTATTTCTT TACCTTTATTCTTTGAAATTGGTTTGTACCAGGTTTCTGATTTGGGCTCTCGCGCTCTTGCCATTTCATTACCTTTCTCC TGCGTTTTAGGAATCCTTTCATCTATGATTGCATCAGCCATGGGTAAACTTGCTTCCTTTTGTTTGGCTTATTAAAACAG TAAATTTAGTTCCCGTGATTTTATCCTTTTCTTTTCCTTTTCTGGCTGGTAAGCTTTATTTCCATGGATATTGTTTACAT TGAATGCTCCAGAGAATTTTGTCTAGCCATTAAAAGTATCTAGTCATGGTATTTGGGTCTTTAGATGAAACCATAACTAT ATCTTCAATGAATTGGATGTAGAAATTTGAGATATGTCAGTCAAATTAGATAGAATTGGAAGCAAGGTACAATCTATGTT TAACCTTACAATGAATGTCTAATTACAGGTTGGCATGCTGTTCAAACTTGTCATAATGCATGATTGTTTAGCCTGTACTG TTTGGTTGACATGCCTAGGTAAATAATGTGCTAAGAATTCAGAGAGAGGACTTATATTAGGGAATGAGGATACAGTAAAA ATTGGTTAGTTCAAAGAAACAGATTTGTTAACAGCAAGTAATTATTATTTATTCATTGGAAAACTCAATTTCTATTCTTG TTAATTGGATTTAGGATTTCATAAAAATCGATTATGTTATGATCAAATGTTGAAATGTTATTTTGTTTCTGATATGGTAC CCTGTAGTTTTCCTGTTCCTTAGACTCTAAAACTTCTACCAAATGTTATGTGGCAACAGCCACGATATGTTTAGATACAC AGTGGAAAACTACGGTGAGCCAAAATCACGGTGGACAGAAGTAGCTTCTCTTAGCTTTTGGGGCTGTACTCCGTGATTTT GGATTTATCGTGGTTTTCCACCTGTATCCAAACACGCACAATCTTGACCTATTGATTTCTTGTTAACGTAAGCATCTGCG AGCTAAAAATGATTGATATATCTATTAAATTTTAAATCCCATATGTGGCTTGGTGGCAGTGAGCAGGAGTTACATATGGG CTTATGCTTGCTTCCAGTTTGCATTTGTCATCCTGCTTGCTCATGTATTCTATTCTATAGTAAGATTATCCTCTTTATGT TGTGCTTGTCATGTTTCTTCATTTCAATTTAATGGAGGTGTCACTTTGGGAGCAAAAGTATAAATATATCTTAACACACT TCTATTTCTACTTGTAGCTTAATGTTAACGCGATTCTATCGGTCATTCTTTCGTCAATCAGTGGATTTGGGATTTCAATC AGTATGAACTCTCTCCTAATGGAATCTATTAAATGGAGAACGAGTAGGCAGATTCAATCTTCGAATCAGAATGTTAACAC GTCGCAGCAGCAGCGCCAGGATCATGCCCCACGGCATCAAGAACCTCAAAGACAGCATCCTCAGCTGCAAATGTTGTAGC AAGAGCAGCACCAATGACAGCAGACCAGTCTTTCACATCTATGAAGAATTGTGTTGTTTCAGTAACGTATTTTTTACACA AGCTTTTTTTTTTCCTACCGAGGTTGGCATTTCACTTGGTTTTGTATCAAAATATTTCAATCCCACATGAGCAGCTATGT GAAAACTGCAGGCAGTGTAGGAACGTTTTGTTAAATATATTTAGAGTGGAAACTTTTATGTGCTTACAATATATGGTTCT CTTACATCTTAAGGCACCGTTCCAAGTTAAGAGGAATCATACTGTAGATTGGATTTTTTTTTTCTATTGTATTTAAATGG GGTATCATGTAAGGACCATAGGTTTTGGTAGGGTGATGCCATTGTCTCCTAAACTCTAATTATTTAGAGTAGCTGAAATT GCTGTTCTATTAATCAATGTTTTACCTTTATTTTG
CDS sequence (LotjaGi6g1v0029400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGCAGGTGCTGAAGTTCAAAATGATGCTTCTAGTTCAATGGTGTCTGCAGATCTTGCTCTTCTTCATCACCA GACATGTGGTGGAAATGGAGAAGATGACCAAACCTCCTTGATTGCTCAGTCCAGAAAACCTAGTCTGTCTTCTCTGCAAA TACCAGCAAGGTCAATAGAAAGTGCATTATCTTCTTTTACTAGGACAGATGGTCCCACATTGTCAAGTCCAGGTTCCACT AGAGGACTTCCCCCAAGGCCAAATTCTGCAAAAGTCAAGTCCTCTATGAGAAATTTACTTTCGGCGAGGAGCTTTCGGGC GAAAACTAGTTCACAAGATTGTGAAAGGAAAGTTCTTATTGTTCCTGACACTTTGCCATCAGATGGCGGTGCTCTGGATC ATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGGTTGTGTTCCCTGCATCAACAAAAGCAGCACATTCGTTGCCG GTTACTCCAAGTGAAAATTCAGGTGGAGAGAATGTAGATGGAAGACATCCAAGGAGTGATTCTGATTTTAGTAAAATGAA AGTTAATCAACATATGACTCGATCATTTTCAGTTCCGGTTAATGTTCAAACCACTATTTCAAAGCCTACAGATTCTAGGC GCCTGATTCGTGTAATTTCAGCTAGACCAAATCTACCAACTATTGATGACATTTCAAGTCACAATACTTCAGTTTCAGAT ATTGTCATTGAAGATGCTTCTGAGGATATTCCTGAGGAAGAAGCAGTCTGTAGGATTTGTTTTGTAGAGCTTGGGGAAGG AGGGAATACTCTTAGGATGGATTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTA GTATCAAAGGAAATAAGACCTGTGATGTCTGCAAGCAGGATGTCCGAAACCTTCCAGTAACGCTCTTGAAAATTTCTAAT CCTGTAACTGTTGCTTGGCAGCCATTGAATGTACCACAGCAGAGAGAAGTTACTTCCTACAGGATCTGGCAGGATGTACC AGTACTCGTCTTGGTCAGCATGCTGGCATACTTTTGCTTTCTAGAGGAACTATTGGTTTCTGATTTGGGCTCTCGCGCTC TTGCCATTTCATTACCTTTCTCCTGCGTTTTAGGAATCCTTTCATCTATGATTGCATCAGCCATGGCTTAA
Protein sequence (LotjaGi6g1v0029400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKAGAEVQNDASSSMVSADLALLHHQTCGGNGEDDQTSLIAQSRKPSLSSLQIPARSIESALSSFTRTDGPTLSSPGST RGLPPRPNSAKVKSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGALDHKPSTSRSLSLNKVVFPASTKAAHSLP VTPSENSGGENVDGRHPRSDSDFSKMKVNQHMTRSFSVPVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSD IVIEDASEDIPEEEAVCRICFVELGEGGNTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISN PVTVAWQPLNVPQQREVTSYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGSRALAISLPFSCVLGILSSMIASAMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 341 | 341 | - | – | |
| MobiDBLite | 27 | 94 | 68 | - | – | |
| MobiDBLite | 31 | 83 | 53 | - | – | |
| PANTHER | 33 | 396 | 364 | 9.9E-166 | – | |
| PANTHER | 33 | 396 | 364 | 9.9E-166 | – | |
| MobiDBLite | 155 | 183 | 29 | - | – | |
| Gene3D | 243 | 314 | 72 | 4.1E-16 | ||
| ProSiteProfiles | 249 | 311 | 63 | 19.204 | ||
| SUPERFAMILY | 253 | 308 | 56 | 1.06E-13 | – | |
| SMART | 256 | 305 | 50 | 1.8E-18 | ||
| CDD | 257 | 305 | 49 | 2.69665E-14 | – | |
| Pfam | 257 | 304 | 48 | 1.4E-11 | ||
| TMHMM | 342 | 361 | 20 | - | – | |
| Phobius | 342 | 361 | 20 | - | – | |
| Phobius | 362 | 372 | 11 | - | – | |
| TMHMM | 373 | 395 | 23 | - | – | |
| Phobius | 373 | 395 | 23 | - | – | |
| Phobius | 396 | 396 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0029400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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