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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0036200 |
| Transcript ID | LotjaGi6g1v0036200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitinyl hydrolase 1; TAIR: AT1G04860.1 ubiquitin-specific protease 2; Swiss-Prot: sp|Q8W4N3|UBP2_ARATH Ubiquitin carboxyl-terminal hydrolase 2; TrEMBL-Plants: tr|I1MY83|I1MY83_SOYBN Ubiquitinyl hydrolase 1; Found in the gene: LotjaGi6g1v0036200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7232246..7236951) extracted from Lotus japonicus Gifu genome v1.2.
AAACATTTTCTTCCTAAAATTTGATTAGGGTATATATATATACTGTGGTTGGATCGGGCAGTGACCCGACTCCATTGGTA AACAAACCTTGCACGGCTCTCTCTCTCTCAGAGAAGAGGGAGGAGCATCATCCTTCACTCTCCGCACCACACCACACCAC ACCACACGGTGATTCCTGTGTTCATCTTCTTCCTCAACACTACCTCGCTCGCTTCACATCTTTCAATCTCATCTCTCCGA TTCTCTCACCCAAATCCCATCAAAGCTTGGAGTCTCTACTCTTCCATTTCCACACACACACACAGGTACTCCTTTTTATC CCTTGTTGTCATTCATTCACTCACTCACAGTTGATTGATGATTGATAATAATTGCTTGCTTTTTTGTCCCAAATTTCTGG GTTTCACTTTTCGATCTGATGCTGCTTTCAGCTTCTGCATCGATGAACTTCATCACTAGGGCCTGAGCAATATATCTAAG TTCATGTTTGTTATTATATTATTAGCAAATTCAACTTTTGAAATTCAGCACTAGAAATTGACCCTGCTGCTTAATTTCTA TTGGGTTTGGATTTCATGGTGATGACAATATGGTTGCAAAGGTTAATGTTTTGCAAACCCCTAAACCTAAACAAATGTTA GCATTGTTTTAGTTTGCTGTCTTAATATGTTTAACTGATTACTTGCAAGCAATTGCTTCTACTTCATTAAAGTTTTCAAA ACATCTTGGATAAGATTTTATGTCTTACAAACTGTCCTTACACTACAGGATTGGATTGCATTGGGACTTTCCTGGATCTA GCTAGTGAAGTGTCAATTCCTTGAAGATCCTTGGCCTCCTGATTTTCAGGTAAACAAATTTGAATGTTTTTTTTTTAATT TTGCCTCATTTTTTTTTTCAGGTTATGTGTCTATATGAGCAATGTATGTTGGTATTTTGATGTTAGAGGGTCTGGATATA TGTTCTTCTGTCTGTTGTATGCTGGTGGAGTTCATTGATTTGTTTTGGATTGCAGGAACTGATGGCGAAGAAAGTCAGAA AGAAGACCCGAGGTTCTGGTAAGGAGAATGGGGTTGCTACCCCTTCGCCAAAAAAAGTTGTGGAAGTGTCCAAGCCTGTT GAGTCTGTTGATGAGGTGGTTTCGGTTCCAAAAGAGACGATTTCTTGCCCTCATCTTGTAAAAGGTGTTAATTTAACTAG ATTGACTGAGAAGATTGGGTCTTCTGGATCCATAAGGTGTGAAGATTGTAGGGAAAGCGCGGCTGATAGGAGGGGCGGTA AAGGAAAAGGCAAACATGGGAAAAAGAAAGGTGGTGCGTCAGTAGATTCGAAATCCGAGTCAAAGTCTATATGGGTTTGT TTGGAGTGTGGTCAATATACATGTGGAGGTTTGGGGCTACCAGTAATCCCAAAATGCCATGTGGTTGGGCATTCGAGGAA AAATAGGCACCCCTTAGTGGTTCATTCTGATAAACCTCAACTCTGTTGGTGTTTTCCGTGCGATATGCTTATTCAGGTTG ATAAAATTGATAAAACGGATGAAACAAGTAATCTTCTATCTGATGTTGTAAAATTGTTGAAAGGGCGATCATCTGAAAAA TCATCAGTGGATGTTGAGGATGCTTCCTTTAAGGACGACAGTCTTACTTCAGAAATTAAGTCAGGAATTCTTGTCACAAG CGATTCACAAGGACAAGGTGGTTATGTAGTTAGAGGTATGGCTAATCTTGGGAACACCTGCTTTTTCAATTCAGTCATGC AAAATCTGCTTGCTATGAATAGATTGCGTGACATCTATATAAAGTTAGATGCTCCTGCTGGGCCACTGATTAGTTCTTTG AAGAAGCTGTTCACTGAAACAAACCCAGAATCAGGATTGAAGAACATTATAAATCCTAGATCCTTTTTTGGATGTGTATG TACTAAGTCTCCGCAATTCCGAGGATATCAGCAGCATGACAGTCATGAATTGCTCCGTTGTTTACTGGATGGGTTGAGTA CTGAAGAACTAGCTGGAAGGAAACAGAATGGTTCTCTCAAGAGAGATGGGACCTCTTCCAGTACTTTAGTTGATGCTTTA TTTGGGGGTCAGATATCCAGTACTGTATGTTGCATTGAATGTGGGCATTTCTCAACAGTGTATGAGCCTTTTTTAGATCT TTCCCTCCCTGTTCCAACTAGGAAACCTCCACCTCGGAAGGCTAAACCCGTAACTCAAACCAAAAAAGCAAAGCTTCCAC CAAAAAAAGGCGGAAAAGCTCGAGTCAAAGTTCTCAAGGAAGCTGATCCCTTACCTGTTCAAAGTCCATCAAACACATCA ACCAACCATCAACCATCCTGCCCTGATCAGTCCACTATATCAGCTGCAGGAGAAATGGTGGCTTCTTCTAGTGATTCTAC AGCATTAGTTTCTGAAGAAATAAACAGTGGGGGTAATAAAGAGGACTTGTCTTTGCCTAATTCGGTTACTGTTGAAGAGC CTAAACAGATACAGGTGGTTGACAATGGGGCAAAGGAAATGTCAGCTTCATCAGATGATTTTGCATGGTTGGATTTTGTG GACGCTCAAACCGATGAACGTGCTTCCATTTCCCAGAATGAGGATGCACCAGAGGTACAGGATACTGAGAGCAAGGATGA ATGTTCAAATGAATTTCCTAAACAGGCTAGCTGTGAAACTAGTGGTCCTGTTTATTCTGTTGATGAGGATCAAAATGTAA GACCAGATTCTTCTTCAGCAAATGGGTGGGAAGATGAGGCTCCATTACAAGTTCAAGGTTCAGAAGTGCTGTTACTTCCG TACAAAGAAGAAAGTTCCTCGGCTGGTGAGATCATTGGAAGAGATGGCGAGGCCTCATCAGCAGTTTTGGATGGTGGTCA AGAAGATTTGGAGTTTGATGCCTTTGGTGGGTTATTCAATGAACCTGAAGTTGTTGCTGGGCCTGCTCCTAGACCTTCTT CAAGTAGTGACATGGATGTTAGTTTCATCGGAAACAGTGAGTCTGATCCAGATGAAGTAGATGACGCTGATTCTCCAGTG TCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCTGAACTTCTCACAGATGAAAATGCTTGGCATTGTGAGAACTGTTC AAAAATTCTCCAACGTCAAAAGTTGGAAGCAAGAACTGTATCCGATGGAAATGAGACTAGTAATCAGGATGAACCATGTC ATGCATCTAACTCTTGTTCTGTTCAAGTCAGAAGCACTGGAAATGGTGATATTAAAAACGACAAGAACATAGAAAATTTG GACTCTCATGTTAAACATGGAGGAGAGGTTGAAAATGGTCAAACAGGTGAGCTGAGTTTAATTGTTAATGAAAAGGATCG CGTGGCATTTAAGGTGGAGAATGCTTGCAATGAAGAAAGGTTCAACCATTCAGCTGCTGATAACAATGACTCAAAAGAAT GCAGCGAGAAAGAAACCAACTCCAAAAGTGTGAAAGTGAAGAGGGATGCAACTAAGAGAGTCCTCATATATAAAGCACCA CCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCCCGTGGACGCTTAAGTAAATTAAATGGTCATGTCATTTT CAGAGAAACAATAGATCTTAGATCATACATGGACCCCAGGTATTTCGATGGATCCTGTTTTGAAGTTTCAACAATTCATT AATGCCTAATGCTTGCTTTTATTTCATAAATTCACCCTTTCCTTACCTTTTGGTTTAATCATAAGAAAAATGTGAGACAT ACTTTCTATTCATTAGGAACAGTTAGGGTTTGTAAATTCTGCTTCTACTGTAGATATTTCTTTTTTATATACTTGTGTTA ACCAGTGGCATGTAATTCATTTCCAATTCTGCTCAAATAGGTGCATCAATGAAGAGAAGTATGAATACCACTTGGTTGGT GTTGTGGAGCACTCAGGAACTATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGGCAAAGGAACAAAGGAAATGC TGATAAGGAGAATGAGAGGTCCACATGGTATCACGCGAGTGATGCATATGTGCGTCAAGTTTCTCTTGATGAAGTTCTTC GCTGTGAGGCATACATTTTATTCTATGAAAAAAATTAAGTGTACCCATTTTCTTTCTATTTTTTGATATTTGAGGTAGAG ATAGAGCCTTACCAAATTTAGAGGAGACACCATTGCAGGTGAGTGTAAAAGCAATTGCCGCATACTGTATACCATTTTTT TCAACATGCTATGAGGTCTTGAATGTACAATGCGATATCATACAATCAAAAGTCAATTTTTCCCCTTACCATCTTCTGAT CCAACTATCAAGCAAAGTTTAGGTATTATTTTTTTTTGAGTGGCAATTAGAGCCAGATTCAATGGTTAATAATAAGAGCT ACCCATTATGAGTAGGTTATTTATCCATTAAATGGTCTTAGTCTGAATCTGGATTCGGATATTACTTGTAATTTTTATGG GTTGCCTATAAAAAAATGGATAAATATCTAACACTACTCATATCTGCATGATATTTATTAGGAAAAAATTGCACTGACCT CTCTTGACCTCCTTTCGATTTTTCACAATGCTCTAGCAGCGATCTTTCAGTTTGAATTGCATGAAGCAAAAAAAAAAAAG TGAATAGAACTTGATCAAAAATCGTTTCAAGTTTTATAAATCAATTACAAATCAAACCAGTTTCTC
CDS sequence (LotjaGi6g1v0036200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAAAGTCAGAAAGAAGACCCGAGGTTCTGGTAAGGAGAATGGGGTTGCTACCCCTTCGCCAAAAAAAGTTGT GGAAGTGTCCAAGCCTGTTGAGTCTGTTGATGAGGTGGTTTCGGTTCCAAAAGAGACGATTTCTTGCCCTCATCTTGTAA AAGGTGTTAATTTAACTAGATTGACTGAGAAGATTGGGTCTTCTGGATCCATAAGGTGTGAAGATTGTAGGGAAAGCGCG GCTGATAGGAGGGGCGGTAAAGGAAAAGGCAAACATGGGAAAAAGAAAGGTGGTGCGTCAGTAGATTCGAAATCCGAGTC AAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAATATACATGTGGAGGTTTGGGGCTACCAGTAATCCCAAAATGCCATG TGGTTGGGCATTCGAGGAAAAATAGGCACCCCTTAGTGGTTCATTCTGATAAACCTCAACTCTGTTGGTGTTTTCCGTGC GATATGCTTATTCAGGTTGATAAAATTGATAAAACGGATGAAACAAGTAATCTTCTATCTGATGTTGTAAAATTGTTGAA AGGGCGATCATCTGAAAAATCATCAGTGGATGTTGAGGATGCTTCCTTTAAGGACGACAGTCTTACTTCAGAAATTAAGT CAGGAATTCTTGTCACAAGCGATTCACAAGGACAAGGTGGTTATGTAGTTAGAGGTATGGCTAATCTTGGGAACACCTGC TTTTTCAATTCAGTCATGCAAAATCTGCTTGCTATGAATAGATTGCGTGACATCTATATAAAGTTAGATGCTCCTGCTGG GCCACTGATTAGTTCTTTGAAGAAGCTGTTCACTGAAACAAACCCAGAATCAGGATTGAAGAACATTATAAATCCTAGAT CCTTTTTTGGATGTGTATGTACTAAGTCTCCGCAATTCCGAGGATATCAGCAGCATGACAGTCATGAATTGCTCCGTTGT TTACTGGATGGGTTGAGTACTGAAGAACTAGCTGGAAGGAAACAGAATGGTTCTCTCAAGAGAGATGGGACCTCTTCCAG TACTTTAGTTGATGCTTTATTTGGGGGTCAGATATCCAGTACTGTATGTTGCATTGAATGTGGGCATTTCTCAACAGTGT ATGAGCCTTTTTTAGATCTTTCCCTCCCTGTTCCAACTAGGAAACCTCCACCTCGGAAGGCTAAACCCGTAACTCAAACC AAAAAAGCAAAGCTTCCACCAAAAAAAGGCGGAAAAGCTCGAGTCAAAGTTCTCAAGGAAGCTGATCCCTTACCTGTTCA AAGTCCATCAAACACATCAACCAACCATCAACCATCCTGCCCTGATCAGTCCACTATATCAGCTGCAGGAGAAATGGTGG CTTCTTCTAGTGATTCTACAGCATTAGTTTCTGAAGAAATAAACAGTGGGGGTAATAAAGAGGACTTGTCTTTGCCTAAT TCGGTTACTGTTGAAGAGCCTAAACAGATACAGGTGGTTGACAATGGGGCAAAGGAAATGTCAGCTTCATCAGATGATTT TGCATGGTTGGATTTTGTGGACGCTCAAACCGATGAACGTGCTTCCATTTCCCAGAATGAGGATGCACCAGAGGTACAGG ATACTGAGAGCAAGGATGAATGTTCAAATGAATTTCCTAAACAGGCTAGCTGTGAAACTAGTGGTCCTGTTTATTCTGTT GATGAGGATCAAAATGTAAGACCAGATTCTTCTTCAGCAAATGGGTGGGAAGATGAGGCTCCATTACAAGTTCAAGGTTC AGAAGTGCTGTTACTTCCGTACAAAGAAGAAAGTTCCTCGGCTGGTGAGATCATTGGAAGAGATGGCGAGGCCTCATCAG CAGTTTTGGATGGTGGTCAAGAAGATTTGGAGTTTGATGCCTTTGGTGGGTTATTCAATGAACCTGAAGTTGTTGCTGGG CCTGCTCCTAGACCTTCTTCAAGTAGTGACATGGATGTTAGTTTCATCGGAAACAGTGAGTCTGATCCAGATGAAGTAGA TGACGCTGATTCTCCAGTGTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCTGAACTTCTCACAGATGAAAATGCTT GGCATTGTGAGAACTGTTCAAAAATTCTCCAACGTCAAAAGTTGGAAGCAAGAACTGTATCCGATGGAAATGAGACTAGT AATCAGGATGAACCATGTCATGCATCTAACTCTTGTTCTGTTCAAGTCAGAAGCACTGGAAATGGTGATATTAAAAACGA CAAGAACATAGAAAATTTGGACTCTCATGTTAAACATGGAGGAGAGGTTGAAAATGGTCAAACAGGTGAGCTGAGTTTAA TTGTTAATGAAAAGGATCGCGTGGCATTTAAGGTGGAGAATGCTTGCAATGAAGAAAGGTTCAACCATTCAGCTGCTGAT AACAATGACTCAAAAGAATGCAGCGAGAAAGAAACCAACTCCAAAAGTGTGAAAGTGAAGAGGGATGCAACTAAGAGAGT CCTCATATATAAAGCACCACCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCCCGTGGACGCTTAAGTAAAT TAAATGGTCATGTCATTTTCAGAGAAACAATAGATCTTAGATCATACATGGACCCCAGGTGCATCAATGAAGAGAAGTAT GAATACCACTTGGTTGGTGTTGTGGAGCACTCAGGAACTATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGGCA AAGGAACAAAGGAAATGCTGATAAGGAGAATGAGAGGTCCACATGGTATCACGCGAGTGATGCATATGTGCGTCAAGTTT CTCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTATGAAAAAAATTAA
Protein sequence (LotjaGi6g1v0036200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKVRKKTRGSGKENGVATPSPKKVVEVSKPVESVDEVVSVPKETISCPHLVKGVNLTRLTEKIGSSGSIRCEDCRESA ADRRGGKGKGKHGKKKGGASVDSKSESKSIWVCLECGQYTCGGLGLPVIPKCHVVGHSRKNRHPLVVHSDKPQLCWCFPC DMLIQVDKIDKTDETSNLLSDVVKLLKGRSSEKSSVDVEDASFKDDSLTSEIKSGILVTSDSQGQGGYVVRGMANLGNTC FFNSVMQNLLAMNRLRDIYIKLDAPAGPLISSLKKLFTETNPESGLKNIINPRSFFGCVCTKSPQFRGYQQHDSHELLRC LLDGLSTEELAGRKQNGSLKRDGTSSSTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLPVPTRKPPPRKAKPVTQT KKAKLPPKKGGKARVKVLKEADPLPVQSPSNTSTNHQPSCPDQSTISAAGEMVASSSDSTALVSEEINSGGNKEDLSLPN SVTVEEPKQIQVVDNGAKEMSASSDDFAWLDFVDAQTDERASISQNEDAPEVQDTESKDECSNEFPKQASCETSGPVYSV DEDQNVRPDSSSANGWEDEAPLQVQGSEVLLLPYKEESSSAGEIIGRDGEASSAVLDGGQEDLEFDAFGGLFNEPEVVAG PAPRPSSSSDMDVSFIGNSESDPDEVDDADSPVSVESCLAHFIKPELLTDENAWHCENCSKILQRQKLEARTVSDGNETS NQDEPCHASNSCSVQVRSTGNGDIKNDKNIENLDSHVKHGGEVENGQTGELSLIVNEKDRVAFKVENACNEERFNHSAAD NNDSKECSEKETNSKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVIFRETIDLRSYMDPRCINEEKY EYHLVGVVEHSGTMRGGHYVAYVRGGQRNKGNADKENERSTWYHASDAYVRQVSLDEVLRCEAYILFYEKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 3 | 418 | 416 | 8.4E-256 | – | |
| PANTHER | 3 | 418 | 416 | 8.4E-256 | – | |
| Gene3D | 44 | 183 | 140 | 1.7E-19 | ||
| SUPERFAMILY | 47 | 165 | 119 | 3.18E-12 | – | |
| Pfam | 73 | 166 | 94 | 8.2E-12 | ||
| MobiDBLite | 81 | 102 | 22 | - | – | |
| ProSiteProfiles | 95 | 166 | 72 | 13.108 | ||
| SMART | 101 | 154 | 54 | 0.0041 | ||
| Gene3D | 214 | 400 | 187 | 1.4E-41 | – | |
| SUPERFAMILY | 230 | 950 | 721 | 4.12E-88 | ||
| ProSiteProfiles | 231 | 951 | 721 | 46.512 | ||
| Pfam | 232 | 948 | 717 | 1.3E-49 | ||
| ProSitePatterns | 232 | 247 | 16 | - | ||
| MobiDBLite | 383 | 483 | 101 | - | – | |
| MobiDBLite | 425 | 483 | 59 | - | – | |
| MobiDBLite | 519 | 581 | 63 | - | – | |
| MobiDBLite | 531 | 545 | 15 | - | – | |
| MobiDBLite | 546 | 578 | 33 | - | – | |
| MobiDBLite | 640 | 671 | 32 | - | – | |
| Gene3D | 644 | 712 | 69 | 1.1E-5 | – | |
| PANTHER | 668 | 949 | 282 | 8.4E-256 | – | |
| PANTHER | 668 | 949 | 282 | 8.4E-256 | – | |
| MobiDBLite | 713 | 749 | 37 | - | – | |
| MobiDBLite | 713 | 746 | 34 | - | – | |
| Gene3D | 717 | 951 | 235 | 1.0E-41 | – | |
| MobiDBLite | 796 | 818 | 23 | - | – | |
| CDD | 823 | 949 | 127 | 2.36501E-50 | – | |
| ProSitePatterns | 882 | 899 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi6g1v0036200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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