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LotjaGi6g1v0038600.1

Overview

Field Value
Gene ID LotjaGi6g1v0038600
Transcript ID LotjaGi6g1v0038600.1
Lotus japonicus genome version Gifu v1.2
Description Protein SAWADEE HOMEODOMAIN-like protein 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|A0A151SH36|A0A151SH36_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0038600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:7528787..7533478) extracted from Lotus japonicus Gifu genome v1.2.

ATTTAGCGGTTTAGACTGATGGTGCTGCACCTAAACCACCTTGTTTTTCATTTTGGGTTCCTCTACACCCAGCTTTACGG TGTTCACTGACCGGCGACGGCGACGGCGACGAGGTCAACATCCTTGCCCACTCATCTCTCTGATTCTCAAGGAACCTTTG AATTGAAACAATGGTTGAACTGAGCTTAATCGATTCTCCATTTCCGAAGCTCTCTACTGACCAGGTACATTCTGTTCTGT TCAGTGTTCACTAGGGTTTGGAATTGGAGTGTGTTATCTTCCATTTTCATTTCTGACGAATGTTCTTGTGTGCTACACTT TTTGCTTCACAAACCCTTGCATTGCATTGCACTCTTCAATTCATGTGCTGCATCCCCATTCATTCACAGATGCTGGAATT GGAGAGAATCTACAATGACATGGGAGAAAATGCATTTGATCAGAATCTCTGCCAGGAGATTGCTGCAACTTTGAGGTGAA TTGGAAATTTTTCCTTTGAAGAGCTCTGGCTTTGTGTGTTTTTTTTTTCCAATAATTAACCTAACCTGCTTTAATTTAAT TTTGATTTTTTCCCTATGGAACAGTGCTGCTAATACATCCATATCATGGGAACAGGTTGGTACATACAGCTAACAGCTCC TTTATCATTTAGACTCATTTTCATATGTATTTCGAGAGTGAATGCATGTTATAATGCTGCTGCATTGGTTTTACTTTTAC TGGGTTTCAGGTGCAGCAGTGGTTCCAAAATAAGCTTCACGAGTCACAGGATCGAGCTGCTTCACTGAATCAACTTGTTG ATATTTCAGATACACCCAGTTTAAGAAGCTCTACAGTTCTACAAGGTTGTCCTTTTCCCTTACCATTTGGAAATACAATT ACATTCCTTGATTTATATAATCTCTTGTTTCCTTCAATTACCATAGAAGGTGATGATGATAACAGTTGTATAAAGTTTAA AATGATTTTAGTAGGCCACAGGATGTAATGACAAGCAATACAGAACTTATAAATTATGATAAGCATAGTCATGTTCTGAG ATCAACTTGTCTTTCAAATTTCCACAATATAATTAAACTTCTTATCATAATGTCAGGTAATCGAGGTGCAGTTGTTTCAG ACTTGGCATTTGAAGCAAGATCTACGAAAGACTTAGCATGGTGAGGAATAAGCTTCTTACTAAGCAGTAGGGCCATTTTG ACTTTTGAAGTTTAGCCATGATATGCAATGTGGCTTTTTGTCAACTCTTTGGGTTATATTATTTTTTAAAGGTGTGGCCT GATTTTTGTTTGTGAATTCCAATCTGAACAAGACTGAAGATGATGTCTTCCCCCCACTCCCCCCCCCCCCCCACCGGGAA AAAAACCCAAGCACCCTCTCCTCTTATTACAGAGAAAACCTTTATTGTTACTTTTTTATAGGCTGTGCACCCAACCTCTC ATATTTATTTCCATCTACAGGCATGATGTTTCAATGCTTCTTAACTACAGAGTTCTGAGCACTGGCGAACTTGTAAGATT CTTTCAGATTGTAACTTTTTTATTTTCGGTCTATAAGAAATTTAGACATCTCCTTTAGAATATATAATTATTAATCAACA AAGGAGTGATAGTTCTTGTCGCACCTGCTATACTTGTCTGATTTTAAATATTTATCTTCAAAGAGCTGCTCACATTTTAG CTGTGTGAATGACATTGACACACACTTGGTAGATATGATGTTATAATTTCTTATCTTGATTTGTGCTTAAAACACTATGA AACTTAATTTTTCTTTCATTTGAACTTGCATGTTTACTATGCAATAGTGTATGTAGCCTATTTGTTCTCCTTCAGATGAT TAAGAATAGAGAAACCACTGAACGTTTTTATGCAATGGAAAACTAAGCAGTGAAAGGTGAAAGATAGTGAAATCTAGCAA CTTGAGGCAAGAGCCACCAAAACTAATTTGCCTGAGCAAAGTAGGATCTAATGTTTTGGAAATGAAAAATAAAAATTGAC AACAATGTAATTTTAATCAATGTAACATGTTTTAGCATACAATTATTTACTCAAGCATGCCTTGTTATAAAATGGTTACA TAATGAAAATAAAGTATGATACCTGGCAAATCACAAGGTTTAAGTTCCCAACAAAAAAAGGTGTGCAAGCCCCTTAATTT AATGACAAATGGAGATAATTAGTCTTAAATAGCCCTACGTGGTCAGGGACTTTTCATAAAGGAAAGAGCCAATAGCACTA GAGTTCATCAATGGAATGATCTGATTTAGTTCAATCATTGACAATTACTTCACTTTCATATCATCCTTGATTTAGTTATA TCGTTCAACATTTTGTGTCTTGCATGAAGCAGCCTTAGTCTCTTCCATATTAGGAATGGAATTTCAACCTTTGATTTATA ACTCTGCTGAGTTGTTCTTGAGTTAGATTGGCACTGATTTCTATTAGTTGCGTCTCCATTACCTGCTGGGGATCTCTGAT ATGGTTTCAATACAAAACTGTCACTAAAACTTACTTTTTCTTTTCTACACTATTGACCACTTTACATTGAGCTGGTATCA GAGCCAAACAGTTAAACAGGTTCTATTTTCAAGTCAAAGAAAACAAAAATGATTGTGCACATTGGTAATGTGTGAAAGTC TGCTCAGAAGAAATTAAAACGTTCAGAGGTGATGGTCCTTCTGGCACCTTGACTTAATGCCTTAGGCAGAACTCCTTTGA CATCACTGAAGAAATTTAACCAATACATTTGTGAATGATCACTAGATGTTTGCATGCTATTTCTTAGGTTATGTTTATTC ATTGAAAAAAGAATGGAAAAGTAAAATATGGACTATGCAACATATATTGCCATACTTTTGAATATTGTAAGTTATCCTAC CGTCTTATGATAGTTGTACAGGCTTAGTGGATTTATTTTTTGGATATTGTAGACGATCGATTAAAAGTTAACGGATCTTG TCACATACAAATTATAGGAAGCTCGTGTACGATATGCTGGATTTGGCAAGGGGGAGGATGAGTGGGTGAATGTGAAATAC GGGGTGCGAGATAGATCTATCCCATTGGAACCTTCAGAGTGCCACAAGGTGAAGGATGGAGATCTTGTACTATGTTTCCT GGTAAGAGATTCTCGCCCCTTTTATTCTACTACAATTTATTTACCTAATTTGTTGTCCAGTGTGATTGATATGTTTGCAA AGTCACATGACTTGTTTCTAATGTGTTAACCAAAATGGCTTTTGATTTTCTTTTGGGGCTTTTAGCTCCTCTAGAATTTC CCTAACTATTAGTACTCTTTTGGGCCTTCATTGGTGTTTCTCAGGAAAGGGATGATTATGCCCTCTACTGTGATGCTCGT GTATTAAGCATCCAGAGGAAGCAACACGATGAGACAGATTGCAAGTGCATCTACACTGTTCGATTTCTCCATGACAACTC TGAGGTGACCTTTGATATATATTTTCCGTGTCACAAAAATCATGTCATGTTATCATCTTTGGTACTTTGTTAGGCAAATC CTTTGATGTTGTCTCTACTTGATGTCAGGAAGCAATTCATTGGAAGAGGGTATGCTATAGGCCTACACAAGAGGAATCTG TTGTCTACCATAACTCACCAGAACCTACAATAGAACCCAGCATGAGTGCCATAGAGAACTTGTGGGGATGAAAGATCTCA TTCTTCTTTCGTACTTCCCTTTTATCTTTCTGGAGTTAGTATTTCTAGTTTGTTACCATGTGAGATAGTGAGGTACATTT GGTACAGACAAGAGAACAGGTTTTGTTCTATAGTAGGTACATTTCAGTATAAATCTTACTTTTGGAAATATTTTCAACAA AATGTTTCTAAAACTCTAAGAATTTCTCTACCATTTTTTAAGTGAACATAAAAACATGAAATAAGAAAATCATCATGCCG TTAGTTTTCTACCATTTTCTGCATATAATCTAGGTGGCTTTTAGGGTATCACTTCTAGGGTGAAAGAGAGTGGTGGGTTT TTCGCATATGAAATGCCAAAATGACCTGATATAGCAAGTGGTAGTGATCGGTAGAAAAAGAATTTGAATAAAATTAAAAT GTGGTGTTACAAAAATGCACTCCTCTCTCCATCTCTATTCCCCCTCACCCCTCCGTCTCTCTATTCTTGTTTGTGAGATC TGCTTTCTTCTCGGCTTCCATGTTGAGATCTGTTTGTTTTTCAATTCACCTTTGAATTTAGCCTCTTGTTTTCTTACTCT TTCAGTTTGCTACTAAAGTTGGTTGAGAATCTGTGCATACTCGGCTTTCCTTGAAACATGGGATGTTGTGGTTGAGGAAG GGAAGAAGCGAATGAGGCCTAAAGCATTTACCTTTAGTTGTGATACTGGTTTTCGTTGAGGATTGAAGGGTGGGGGTGAA TCTTGTGGGTATATTTAGATTTAAATTGAATTTTTGTGAAGGAGAGTAGAGCACAAAATTGCTTGTGTTTTCGTGGGGGT GTCATTTTTTGAGAATTTTGTTGCTTAATTAGTCTACTTAGAGAGTGTTTTGAAAGTTGCGGTAGATCTGGTGGTCATGA GTGGAGCTTGATGTTATGTTGTTGGTGAAGAAGAGAATAAACAAGTACAATGAGTAGATAACAATAATGACATAATTGAT ATTTTAAAGTAGTTTAAGGGTAAATTTATAACTTTCAATCGTAAAAAGTCTT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0038600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGAACTGAGCTTAATCGATTCTCCATTTCCGAAGCTCTCTACTGACCAGATGCTGGAATTGGAGAGAATCTACAA TGACATGGGAGAAAATGCATTTGATCAGAATCTCTGCCAGGAGATTGCTGCAACTTTGAGTGCTGCTAATACATCCATAT CATGGGAACAGGTGCAGCAGTGGTTCCAAAATAAGCTTCACGAGTCACAGGATCGAGCTGCTTCACTGAATCAACTTGTT GATATTTCAGATACACCCAGTTTAAGAAGCTCTACAGTTCTACAAGGTAATCGAGGTGCAGTTGTTTCAGACTTGGCATT TGAAGCAAGATCTACGAAAGACTTAGCATGGCATGATGTTTCAATGCTTCTTAACTACAGAGTTCTGAGCACTGGCGAAC TTGAAGCTCGTGTACGATATGCTGGATTTGGCAAGGGGGAGGATGAGTGGGTGAATGTGAAATACGGGGTGCGAGATAGA TCTATCCCATTGGAACCTTCAGAGTGCCACAAGGTGAAGGATGGAGATCTTGTACTATGTTTCCTGGAAAGGGATGATTA TGCCCTCTACTGTGATGCTCGTGTATTAAGCATCCAGAGGAAGCAACACGATGAGACAGATTGCAAGTGCATCTACACTG TTCGATTTCTCCATGACAACTCTGAGGAAGCAATTCATTGGAAGAGGGTATGCTATAGGCCTACACAAGAGGAATCTGTT GTCTACCATAACTCACCAGAACCTACAATAGAACCCAGCATGAGTGCCATAGAGAACTTGTGGGGATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0038600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVELSLIDSPFPKLSTDQMLELERIYNDMGENAFDQNLCQEIAATLSAANTSISWEQVQQWFQNKLHESQDRAASLNQLV DISDTPSLRSSTVLQGNRGAVVSDLAFEARSTKDLAWHDVSMLLNYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDR SIPLEPSECHKVKDGDLVLCFLERDDYALYCDARVLSIQRKQHDETDCKCIYTVRFLHDNSEEAIHWKRVCYRPTQEESV VYHNSPEPTIEPSMSAIENLWG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33827:SF2
9 237 229 9.5E-93 –
PANTHER
PTHR33827
9 237 229 9.5E-93
IPR039276
CDD
cd00086
13 65 53 8.55012E-4
IPR001356
Pfam
PF00046
15 65 51 5.4E-5
IPR001356
Gene3D
G3DSA:2.40.50.40
102 163 62 1.5E-26 –
Pfam
PF16719
104 231 128 6.9E-37
IPR032001
Gene3D
G3DSA:2.30.30.140
164 236 73 1.1E-29 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0038600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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