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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0040700 |
| Transcript ID | LotjaGi6g1v0040700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp|O23254|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr|I3SEQ9|I3SEQ9_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0040700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7887546..7889843) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCCGGTGAACGACTGGGGCAACACGCCGCTATCAACGGTGGACCCGGAGATCCACGACCTCATCGAGCACGAGAA GCGTCGCCAATGCCGCGGCATCGAGCTCATAGCATCGGAGAATTTCACCTCCTTCGCCGTCATCCAAGCTCTTGGCAGCG CCCTCACCAACAAATACTCCGAAGGCATGCCCGGTAACCGCTACTACGGCGGCAATGAGTTCATCGACCAGATCGAGAAT CTCTGCCGCTCTCGCGCTCTCCAGGCCTTCCACCTCGACGCCGCCGCGTGGGGTGTTAACGTCCAGCCTTATTCCGGTTC TCCGGCGAATTTCGCCGCCTACACCGCCGTGCTCCAGCCGCATGATCGTATCATGGGGCTGGATCTTCCTTCCGGCGGGC ATTTGACTCATGGGTACTACACCTCCGGCGGGAAGAAGATCTCGGCGACTTCGATTTACTTTGAGAGTTTGCCTTACAAG GTGAATTTCAGTACTGGGTATATTGACTATGATAGGTTGGAGGAGAAGGCTTTGGATTTCAGGCCAAAGTTGATTATCTG TGGTGGTAGTGCTTACCCTAGGGACTGGGATTATGCCAGGTTTAGACAGGTTGCTGATAAGTGTGGTGCACTTCTGCTAT GTGATATGGCTCACATTAGTGGCCTTGTTGCTGCTCAGGTACCTTCATGCCAATTCTCTTCTTCTCTCTTTGTGATGTGT AATTGTTTGTTGATTGAGTTGAGAGTGTACAAATTCTTATTTGAAAGGAGTGAATGTGTATTTGTTTGTGTTTGGTTTTG GTTTTATAATCATTTTTAGATAGAATTGTTTCAGCATTTCAGAAAGAAGTCACAAAATAGTTTCTGGATTGTTTTGCATT TATGTGACTACTGCCAATTTGGGTACGCCGTGTTAAACGTAACAATTAGGATCCTCTCGTGTCACATTACATTATGGATA AAGGAAGCTAGCAATTAAGATTGTGTTTGGTTTTCAGTTTGAAAGTCCGTTTGGGGCATTGGAAATTAGAATTCAAGATC ACACGTTCCAATGCCTCAAACTTGAAAGAGGCTTTGGACCTCCGTTGGGTGAAAGCACTTTTAAACTGAAAATCAAACAG ACACTGAGTTTAATTAAGAGATGTGATACCAGTGTTTTTTAATTAATATTATGAGTGTTTCTCTTTTTGGATTGTGGATA CAGGAAGCAAATAACCCATTTGAGTACTGTGACATTGTCACAACAACAACACACAAGAGCTTGAGGGGGCCCAGGGCGGG TATGATCTTCTACCGGAAGGGACCTAAACCGCCCAAGAAGGGCCAGCCGGAGAATGCAGTGTATGATTTTGAAGACAAGA TCAACTTTGCAGTCTTCCCCTCCCTTCAGGGTGGTCCTCACAACCACCAGATCGGCGCCCTTGCTGTCGCTTTGAAACAG GCCATGACACCTGGGTTCAAGGCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCTATTGGAAATTACTTGATGAGCAA AGGTTACAGCCTTGTCACTGGAGGAACTGAGAACCATCTTGTCTTGTGGGATCTTCGACCTCTCGGATTGACCGGTAAAC TAAACCCCATCATAGCTAAGAACAAAATAGCTAGCTCATAGGGTCTAAAGTTGGCATCAATTTGTTGATGCAATTTCTAT ACTCTTGCAGGCAATAAGGTGGAGAAACTTTGTGACCTCTGCAACATTACTGTGAACAAAAATGCTGTTTTTGGTGATAG CAGTGCCTTGGCTCCTGGGGGAGTAAGAGTTGGTAAGAACTCCTGAATGAACTTAAATATTGTTGTTGTTTGTGATCTTT CATGGTACAGGCATTCTTAGAAAGTTATGCTGGGTTATTTTTGGAAGGAAATTCAGGGTTTTGATTCATTCACTCTCAAT TTTCTCTTCCATCTCATTTCCACGCACGTTCTCGTCTCTAATTCCTATATCTCTCTCAGTGTGTGGGTGGAAATGAGGTG TGTATGAAGTATTTTCCTTTTGCATGAGTACTGACTAGAGTTTCTGTTGACAGGAGCCCCAGCTATGACTTCCAGGGGCT TGGTTGAGAAGGACTTTGAACAGATCGGAGAGTTCCTTCACCGTGCAGTGTCTCTCACGCTGGAGATCCAGAACGAGTAT GGCAAACTTTTGAAGGATTTCAACAAGGGCTTGGTGAACAATAAGGCTATTGAAGAACTCAAAGCTGATGTTGAGAAGTT CTCAGCCTCATTCGATATGCCTGGATTCCTAGTATCTGAGTTGAAGTACAAGGATTAG
CDS sequence (LotjaGi6g1v0040700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCGGTGAACGACTGGGGCAACACGCCGCTATCAACGGTGGACCCGGAGATCCACGACCTCATCGAGCACGAGAA GCGTCGCCAATGCCGCGGCATCGAGCTCATAGCATCGGAGAATTTCACCTCCTTCGCCGTCATCCAAGCTCTTGGCAGCG CCCTCACCAACAAATACTCCGAAGGCATGCCCGGTAACCGCTACTACGGCGGCAATGAGTTCATCGACCAGATCGAGAAT CTCTGCCGCTCTCGCGCTCTCCAGGCCTTCCACCTCGACGCCGCCGCGTGGGGTGTTAACGTCCAGCCTTATTCCGGTTC TCCGGCGAATTTCGCCGCCTACACCGCCGTGCTCCAGCCGCATGATCGTATCATGGGGCTGGATCTTCCTTCCGGCGGGC ATTTGACTCATGGGTACTACACCTCCGGCGGGAAGAAGATCTCGGCGACTTCGATTTACTTTGAGAGTTTGCCTTACAAG GTGAATTTCAGTACTGGGTATATTGACTATGATAGGTTGGAGGAGAAGGCTTTGGATTTCAGGCCAAAGTTGATTATCTG TGGTGGTAGTGCTTACCCTAGGGACTGGGATTATGCCAGGTTTAGACAGGTTGCTGATAAGTGTGGTGCACTTCTGCTAT GTGATATGGCTCACATTAGTGGCCTTGTTGCTGCTCAGGAAGCAAATAACCCATTTGAGTACTGTGACATTGTCACAACA ACAACACACAAGAGCTTGAGGGGGCCCAGGGCGGGTATGATCTTCTACCGGAAGGGACCTAAACCGCCCAAGAAGGGCCA GCCGGAGAATGCAGTGTATGATTTTGAAGACAAGATCAACTTTGCAGTCTTCCCCTCCCTTCAGGGTGGTCCTCACAACC ACCAGATCGGCGCCCTTGCTGTCGCTTTGAAACAGGCCATGACACCTGGGTTCAAGGCATATGCCAAGCAAGTTAAGGCC AATGCAGTTGCTATTGGAAATTACTTGATGAGCAAAGGTTACAGCCTTGTCACTGGAGGAACTGAGAACCATCTTGTCTT GTGGGATCTTCGACCTCTCGGATTGACCGGCAATAAGGTGGAGAAACTTTGTGACCTCTGCAACATTACTGTGAACAAAA ATGCTGTTTTTGGTGATAGCAGTGCCTTGGCTCCTGGGGGAGTAAGAGCATTCTTAGAAAGTTATAGTTTCTGTTGA
Protein sequence (LotjaGi6g1v0040700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRYYGGNEFIDQIEN LCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK VNFSTGYIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTT TTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMTPGFKAYAKQVKA NAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRAFLESYSFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 390 | 390 | 1.2E-261 | – | |
| PIRSF | 1 | 393 | 393 | 5.8E-165 | ||
| PANTHER | 1 | 390 | 390 | 1.2E-261 | ||
| SUPERFAMILY | 7 | 389 | 383 | 3.1E-159 | ||
| Pfam | 12 | 389 | 378 | 1.6E-175 | ||
| CDD | 15 | 389 | 375 | 0.0 | ||
| Gene3D | 16 | 389 | 374 | 1.7E-189 | ||
| Gene3D | 41 | 316 | 276 | 1.7E-189 | ||
| ProSitePatterns | 236 | 252 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi6g1v0040700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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