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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0055500 |
| Transcript ID | LotjaGi6g1v0055500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nudix hydrolase-like protein; TAIR: AT2G01670.1 nudix hydrolase homolog 17; Swiss-Prot: sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial; TrEMBL-Plants: tr|I3SJG4|I3SJG4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0055500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10059767..10062726) extracted from Lotus japonicus Gifu genome v1.2.
CACTTTCTCTCTCTAATCGGATTCTTATTAAAAGGGGTCCCTCTTCCTGTTATGCTATCCACTAAACACAATTTACATTC GTTCGTTCGTTTGTTGTTGTTCTTTCACTTCCTGTTTCTTGTTCCTAACACACTCTGTCTCAAAATTTCATTGAAAATGG TTGCTTTGATTTCTCAAGAGAATGCTATTGCATTGGTTTCTCGTACCGGTAGGGAGTTGCAGCGTTATAGAGAAGGTCGT CGCCAAGTTGTGGGGTTCGTCTCTTCATACTACTCTATCTTTTCTTAGTTTTTCAATTTTCATGAAAAAAATGGTACCCA TCTATGTTTTGAAGTTTGTAAACCCAAAGATTTGTGCTTTTTCTTGTGGGGTGGTTTTGATTTTGCTGAGTTCTGAAACC ATTTTGACTTCTTAGAAAGAGTGTGAGATATTGGATTTTCAGAATTTGAACACTTGTTGACTATTGGTTACTGAGTTTAT GAGTTTCTAATTGGTTAATTGATAGTGAATTTAGTTTTGGAGGCTTGGAGCTTTATTTAATGTTTACAATTTCTATTTTT TTTACCTACTAATTTGTTCCTTCTATCTTTCATGTTCATGCAGATGCATACCCTACAGATTTAAGGTTGGGGAGAAAGCT TCTCTTAATGATTCTGGTGAATTGGAAGTCCTGGTTATTAGTTCTCAGAAAGGCAAAGGGTTGCTATTTCCAAAGGTATT GACTATAGAGAATATGGTCAACAATCAATTATAAATTACACATCATTTCCATTAATTTTCCTTCATTTTCTCATTTATAA TTTTCTGGTTGACCAAACAACAGGGAGGCTGGGAATTAGACGAATCACAAAAAGAGGCAGCTTTAAGAGAGACCCTGGAG GAAGCAGGGGTTCGAGGCATTGTTGGGGTGAGCCTCTTATTCAAGACTTTGGGCTTAAAAATCAAGAGATTTCAAAAAAA AATTAAAATTACAAACTAAGTGCGTGTTTGGATCTGCGTTTTCAAAATTGATTTTAATAAAATTGATTATAGTAAAAGTA AGTTGAAACTTGAAAGTCAATGTTTATGGGAAAAATTATTTTATAGGGTCGTTGACAAATTGAGTCATTAAATTCCACAA TTGATTATGTCTAACGCGAAAACTAGTCTCTCAAGCCTCTAAACATATTATAACCACTAACCACCTAGAAGTGATTCTGG TCAATGATAACTGATTTTATGGTTCTCAAACGTGGAACCAAACAGACACTAACTGCTCCTGTTCTTTATGTTGGTGCAGG GTAGATTGGGTAAATGGAGCTTCAAGAGCAAGACCCATGATGCTTTATATGAAGGATACATGTTCCCACTACTTGTTCAA GAGCAATTGGAGTTCTGGCCAGAGCAGAACCTTCGTCAAAGAATATGGGTGAGTAAAAAGCTTTTTCAAAAAAAGATGAG CCAGATTGAATAATGTTGAAGCATTTTTAATTGATGGTTGTTGTTTTCTGAACAAGTCACTGATTTTTTGTTTGAAATTT TCTGTTTTGGTGTGTAGATGAGCGTCACTGAGGCAAGGGAAGTTTGTCAACACTGGTGGATGAAAGAAGCACTAGACAGG CTTGTAAATCGCCTCACTGGTCAGAAACTCGGTCTCGAGAAGCAAATTCATCTGTGTCCCAAGAACTGCATGGGAGACGC CAAATCTGACTTTAAGTGCATGTTTGGAAATCCCTCTACAGTTGAGTTTGAATCATAAATCAATTTTGGTGTGAGGTAAT TGATTCTGGGAAACAGAAGCTGATCCAAACATGTGATAAATAGGGTAACTTCATGAAGGGTAGAGCTCAATTTTTCTGAG TTTCTCGGGCGGCATGAATTTGAAGAGAAGAGTAGGATCTAAGGAATTGAGCCAGATGTTAGTATAATATAAATAATAGA TGGTAGATCACATAGAAGTTTGCAATTCCCCAGATTTTTTTTTCCTGAGAGAAGGAATTTTATCTGCTTGTGCGAGTCTA GATGAAATGTATTTGTGGGAATTCACTTTTATCGGTATTGCTGGGATATCTGGAAATCCATTAGATAACAAACATATTGC CTTGTTTTTTAAGCAACACAATTGTGCTAATGAAAGCCAGGGGCCATATGAATATTTGTATGGAAAATGATCGTTTAACA GCTCTGGGTGTATTTACCTCAAAAGATAGGAGAGAAATGAGAAGAAAGAAGTGAAAGGGAGAGATGCGATGAAGAACAGA AGAAGTAAAAGAGATAAAGAAAAATTGAAGCGTGATCTAAAAAAATAGGTAAAATAGACTGGATTGATATTTGAGGACAG CATTCGGTGTGTATCCATAAGTTAATTAATAGTATAAGACATATCCAAAACATTACTCTTGATTCACCATAAAAAGTAAG AACACAATTTTTTTTTGAAAGTCCCAACTAATACATAGTCATTACTTAAAAGCAAAACCCAAAAACAGAAAACAAAAGCC CCAATCCCTTTACACAAGAGATCATAAACCCACCGCAGGCACAAAACTATAGCCCCAAAAGCAATTAGTAGTACTTATGC ATGCGGCAAGGAACATAAAACAAACCAACCAAAATACATGTTAACCTCATTAAATGGGACATAACGAACAGATGAAGGCC TTATGCAGCAAGGAAATCATGCCCTTGAATCACATAACAAACCACAACGTAGCACTGGAGGAGGCACATGACAAAATTAA AACATGTCAGCTCCAAGCAAAGGCACAATTTACACCACTAAACAAGAATGGGAACATAAACAACACCGTTTCAGTTTCAC CGTTTCACTGTTACTAATTCAAAATAGAACTAGGGTTTGAAATGGGTGGGTAAATGGGTATTGACTATTGGGTAAATTAG TGGGCCAAACCAGAAAAAAGTTAAAAAAAATTCAATTAAAATCTGATCCATTAAAAGTACGATCGGATCGAGATCCGAAG
CDS sequence (LotjaGi6g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATCCACTAAACACAATTTACATTCGTTCGTTCGTTTGTTGTTGTTCTTTCACTTCCTGTTTCTTGTTCCTAACAC ACTCTGTCTCAAAATTTCATTGAAAATGGTTGCTTTGATTTCTCAAGAGAATGCTATTGCATTGGTTTCTCGTACCGGTA GGGAGTTGCAGCGTTATAGAGAAGGTCGTCGCCAAGTTGTGGGATGCATACCCTACAGATTTAAGGTTGGGGAGAAAGCT TCTCTTAATGATTCTGGTGAATTGGAAGTCCTGGTTATTAGTTCTCAGAAAGGCAAAGGGTTGCTATTTCCAAAGGGAGG CTGGGAATTAGACGAATCACAAAAAGAGGCAGCTTTAAGAGAGACCCTGGAGGAAGCAGGGGTTCGAGGCATTGTTGGGG GTAGATTGGGTAAATGGAGCTTCAAGAGCAAGACCCATGATGCTTTATATGAAGGATACATGTTCCCACTACTTGTTCAA GAGCAATTGGAGTTCTGGCCAGAGCAGAACCTTCGTCAAAGAATATGGATGAGCGTCACTGAGGCAAGGGAAGTTTGTCA ACACTGGTGGATGAAAGAAGCACTAGACAGGCTTGTAAATCGCCTCACTGGTCAGAAACTCGGTCTCGAGAAGCAAATTC ATCTGTGTCCCAAGAACTGCATGGGAGACGCCAAATCTGACTTTAAGTGCATGTTTGGAAATCCCTCTACAGTTGAGTTT GAATCATAA
Protein sequence (LotjaGi6g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSTKHNLHSFVRLLLFFHFLFLVPNTLCLKISLKMVALISQENAIALVSRTGRELQRYREGRRQVVGCIPYRFKVGEKA SLNDSGELEVLVISSQKGKGLLFPKGGWELDESQKEAALRETLEEAGVRGIVGGRLGKWSFKSKTHDALYEGYMFPLLVQ EQLEFWPEQNLRQRIWMSVTEAREVCQHWWMKEALDRLVNRLTGQKLGLEKQIHLCPKNCMGDAKSDFKCMFGNPSTVEF ES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| TMHMM | 15 | 34 | 20 | - | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 242 | 213 | - | – | |
| PANTHER | 36 | 227 | 192 | 8.4E-101 | – | |
| PANTHER | 36 | 227 | 192 | 8.4E-101 | – | |
| SUPERFAMILY | 57 | 202 | 146 | 6.77E-20 | ||
| Gene3D | 57 | 201 | 145 | 6.4E-27 | – | |
| ProSiteProfiles | 62 | 199 | 138 | 14.077 | ||
| CDD | 65 | 192 | 128 | 9.03745E-46 | – | |
| Pfam | 83 | 196 | 114 | 6.5E-10 | ||
| ProSitePatterns | 106 | 127 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0055500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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