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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0066700 |
| Transcript ID | LotjaGi6g1v0066700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G01610.1 cell division cycle 48C; Swiss-Prot: sp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C; TrEMBL-Plants: tr|A0A151TYW4|A0A151TYW4_CAJCA Cell division control protein 48 isogeny C; Found in the gene: LotjaGi6g1v0066700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:12666397..12671155) extracted from Lotus japonicus Gifu genome v1.2.
TTACAAACAAACGACCCATGCATCGTTCTGGTTAGGGCTTGTGATTACAACGGAGGATGAGGAGAAGAAACGCGCTGCAA GAAACCCTTCGCCGCCGCGTTGAGGCCTGCAAATCCACACACGCCACCGCCGCCGAAATCGTGAAACATCTCCGCTTTAC TTACTCTGCTGATTACCACCGAACCAAGCGCCAAACTCTAACGCGACTTGTTCACGAAGCTCTTCAATCCACTACCACCG CGGCCGCTGCCGCCAACACTCCTACAACACGGAAGCTCGTTCATGACGACGACGGAGTTGATGAGTGTCGAAAGAAGCGG AGGAAAACAGATGAAGGTGAAGTGCGATTGCAAATTGTGGAAGCGAGTGTGCCGCGCGATTCGGAACGTGGTTTGGTCAG GCTGAAGACAAATTTACGGGAGTTATATAAGGGTACAGTTACAAAGAATGTTGAATTGGAGATGGGTAATAGTAGAAAGG CAACTAGTACTGTGAATGAAGGTGAGGTTGAGGTGAAGGGGAAGAGGTTTAGGGATTTTGGTGGGATGAAGAAGGTTTTG GAGAGATTGAAGAGGGAGGTGTTACTGCCACTGTGCCATCCCAAGGAGTGGAGAATGTTAGGACATAAGCCAGAAGTATC GGGGGTTTTGTTGCATGGACCTCCTGGCTGTGGGAAGACTGAACTGGCTCATGCTATTGCTAATGAGACTCGTCTTCCTC TCTATCCCATTTCAGCTACTGCCTTGGTGTCTGCAGGCTCAGGTATTGCATGAATTTCAACTTTAACTAACTTATCATTT ACTCCAATTTATATACACAGTCTTAGATATTTTTTCAAGAATGAAGTTCGGAATGATTGTTGGACATTGTTATGATGGAT CATACTTCTCTTTCTTAATTAGGTTCATCTGAAGCGAATATTAGAGACCTTTTCTCTAAAGCATACAAAACTGCTCCCTC AATTATCTTTATTGATGAGATTGACGCAATTGCTTCAAAAAGAGAGAATTCACAGCATGGGATGGAGAATCGAATGGTTT CACAGTTACTTACTTGCATGAATCAATCAGTTCTTGATTCGGAGAGTAGTAGCTCTGTTCTTGTAATTGGAGCTACAAAT AGGCCAGATGCTGTTGACCCTGCCCTTAGAAGGCCTGGTAGATTTGATTGTGAGATTAATATAGGCATTCCTGATGAATC TGCTAGGGAGGACATACTTTCCGTGCTAACTCGCGGTCTTTTAATCGAGGGTCCGATTGATCTAAAAAAGTTAGCTAGGT CTACGCCAGGATTTGCTGGCGCAGATTTGGTGTGTCTAGTTAAAATAGCGGGCAAGTTGGCGATGTTAAGAATAGTTGAT GAAAGGTATGTCATGAGGGAGTTTCTTGAAGATTGGTTGATGGAGTCTTGGTCACGTGAAGAAAGGGATAAGCTTGCCCT CAAAATGTCTGATTTCGAGGTGCTTTAGATTGTTCCTAGCCTTTTTCAAAATTTGCATTGCATGTCATGTATTTGCTCAT ACCTACTTTTACTATTCTATTTTTAGGAGATATTTCTTCTCTTTAGTAAAACATTGGATAAAGTTGTTTCAAGTCTTCTA TTGTAGTCTTATAGCTATTTTAAAACATTGAGTATTTATGCAGGAAGCTATCAAAGTTGTACAACCGTCAACAAGAAGAG AAGGGTTCTCTTCCATTCCAAATGTAAAGTGGGAAGATGTTGGTGGGCTTGATTCGTTAAGAGATGAGTTTGAAGACTTT ATTATAGGCCGTATTAAAGATCCTGAACTTTACGAGGTAACTTACAAAAATTATACTTTTTTTACATTGCAAATTCTTTT GACTTAAAGTCTGCTCATGCATTATGCAGTTTAGAAAAGTAAAATATTCATTCAGTTGAGTTAACTTTTATATCTTTGTG ATCCTCTCCTTTGTATAGCCTCATCATTCAGTTGGGTTTTTCTTTTTATAAGCAAATGCAAACATGTAAAAACTTGCAGC ATGTAGCTGCACTGCTGTAGTAACAAGGTAGGTTATGGAGGATATTTAACTCCTATGTTTTGGATTTTAGAAAAGGTAAC ATTCGGGCAGTCTATTTGTTAGGAGTTAGGACCCCAATTGAGTGAAAGATGTATGGAAGAAAGAAATTCTATGGGACCAA AGCAGCTAGATGAGAGACCATCTGTGTGCAGGTTTTAGTGGGAGAAAGTGAGCCGACTAGGAAATCTGTTTTGTATTGTT AAGGATTATATCTGAGGCTCAGGACTGGATAATAGTCTTTCTCTCTACTACGAACAGAAACACTGAGGAATCCGGATCTT TTGGTTTATCTTTTGTGTTGCTGAAAACTGTAATCATCTAATTTCTGCAATAATTTGCTTTTCACGCTTTCTCTGTCACT ATTTCATTCTCTGTCATAGGCCGCTGAAACTCAATCCCCTGGAGAAGGTTGTCCATACTGGAAAGCTGGGATTGGGTGAT TACCATCTTCGGCTCTTGATGTGCACCATATTTTGCATGGAAGTCAGCACAGAAGTTGCCTTCTTTGAGTGTGCACATCA AGGGTGCTGGTTAGCGTTCTCTTTTATTAATTGTACTCCTGGTCCAGCAGTAGAGCCAACATGATTGTAAAAGCACCATA ATCAATTTTAATTCTCTTGTTTCTCAAGTCAATATTCATTTTACAATGGCCGTGAAATTTGTCAGTCAAACTTGTTGTCA AAATCTGAGTGAAGAACACCTGTATCCGTTTACATCAATGAGCCCGTTTTGTCATATGCGGAGTTTCTAGAGCATTAGAT GAGCTTCCTTATCTACCATATAGTTGACAAAATCTCTTGATCATTAGTTTGGTATATGAATTCTCCAATTCTCTTACTAT ATTCTATGTCCTTATTGTAAAAATTGAGTTATTGATTTGTCTTTCACTTTTTCATGAAAAAGTACAAGTTAAATGTCGCT TGATGATCACTAATCAATATTTATTGGATTTGTTCAGTGCTTTGGGTCCGATCATCTTGAGACTGGATTTTTGCTTTATG GACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGCAGCAGGAGCTAATTTCATTTATATTCAGGCC TGACTAAACTTTCATCCTTTTCTTATTTGTTTTGGTTTTTAGTGTTCCTGATTTTAATAAACCATTGTTAATTGATGTTA ATTGCTTTTGTTAAATGTTTAGGGACCTGAACTACTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGGACATTGT TTAGTCGTGCAAGGACATGTGCACCTTGTATACTTTTTCTCGATGAGGTTTATGGTTCTATCTTCTTAAGAATGTTTGTT AACTCTAATATTTGATCATGGCATAATCATGTGATTTCAATTTTATAAACTATAATTTTTTTTCTGGAATTTTTTTCTTC GAATGCACTATCCTCACATTCTTTTTGCCATTTTCAGGTGGATGCTTTGACAACCAGACGTAGTTTAGAAGGTGGACGGG TTACTGAAGGACTAGTGAACCAGGTCCAACAACTGCTAATATTTTGAATGATTATAATTACTCTTTAGAGCAACATGAAT AATATGAGATAATTATATGAAATTGCAGTTGCTGACCGAGTTAGATGGAAAAGAGCAGCGGAAGGATGTTTATGTGATTG GTACAACAAATAGGTACATTTTGTTCATCATCTATATTCCCTAATTAATTATTTAACCTCTTATCAGGCTGTATCACACT AAGTTTCTCATTTTTGCTCTCTTTTGCTGCAGGCCTGAGGCGGTGGATCGCGCTATTTTACGGCCTGGTAGGCTTGGAAA ACATCTTTATGTTCCTCACCCAAGTCCAGAAGATCGGGTTAAGATATTGAAAGCTCTTGCAAGAGATACGCGCCTTGATG CCGGTGTGGATTTGAATGTCATAGGAAGAATGGAAGCTTGTGAAAACATGAGTGGTGCTGAACTTAGGGCACTGGTTTGT ATCCCCACTCTATTTTGATGTTGTCTATTTCATCCTTATTTTACTAGTAGTGCATGTGATGTGTATGAGTACATGTTTGA TCATATAGATGGTGAGTGGGTTTGAGGGTTGGAGTATAATAAGAACAAGGAGTAAATTGTGGTATTAACTTAATTTTTTC TTAATCAGATGGGCGAAGTGGAAAGGGATGCTCGTAGAGAGGTAAGGGCCGGAACTAATACAACCCGTACCATCAAGACA CATCATTTTGATGCAGCGTTCAGTAAAATCTCTGCCTCTAAGTCAGACAAGGTATGGCTAATTCTGCTTTTTTTATTCAC ACACAGAGATTCTCATGGTGAAAATTTAGTTTTAGATCTTAATGTTGGAATTATTTTATTTTTTTGGAGCAGCAAAGGTT TTTTTTCACTACCGGTAATGGTCAAAGAGGTTAACAATAGCATGAGCATGAGTATGGCAATGACTTGGTATATGTTTTTG TTTAAAGAGTTGAAGATTTTCAATGTGAATTTGCGGCTTTCTAAGGTAAAATACCACACGGAGCTAGTAGAAGCCAACGG TATTTAAACACGGTGATTATATTACTTTGAGGAGAGGGTGAAAGAAACTATTTGTTAGAATTGAGATCAGTTAACAGTTG CTTTAGCCAGTTCTTAGGAGTTTTTTTTTACTAAAAACAATTTTTTTCTCTGCTGTATTAATAATTCATTCTCTCTCCTA ATGAAGTACAAATAAAAATAAAAATATATGGGTTGCTTA
CDS sequence (LotjaGi6g1v0066700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAGAAGAAACGCGCTGCAAGAAACCCTTCGCCGCCGCGTTGAGGCCTGCAAATCCACACACGCCACCGCCGCCGA AATCGTGAAACATCTCCGCTTTACTTACTCTGCTGATTACCACCGAACCAAGCGCCAAACTCTAACGCGACTTGTTCACG AAGCTCTTCAATCCACTACCACCGCGGCCGCTGCCGCCAACACTCCTACAACACGGAAGCTCGTTCATGACGACGACGGA GTTGATGAGTGTCGAAAGAAGCGGAGGAAAACAGATGAAGGTGAAGTGCGATTGCAAATTGTGGAAGCGAGTGTGCCGCG CGATTCGGAACGTGGTTTGGTCAGGCTGAAGACAAATTTACGGGAGTTATATAAGGGTACAGTTACAAAGAATGTTGAAT TGGAGATGGGTAATAGTAGAAAGGCAACTAGTACTGTGAATGAAGGTGAGGTTGAGGTGAAGGGGAAGAGGTTTAGGGAT TTTGGTGGGATGAAGAAGGTTTTGGAGAGATTGAAGAGGGAGGTGTTACTGCCACTGTGCCATCCCAAGGAGTGGAGAAT GTTAGGACATAAGCCAGAAGTATCGGGGGTTTTGTTGCATGGACCTCCTGGCTGTGGGAAGACTGAACTGGCTCATGCTA TTGCTAATGAGACTCGTCTTCCTCTCTATCCCATTTCAGCTACTGCCTTGGTGTCTGCAGGCTCAGGTTCATCTGAAGCG AATATTAGAGACCTTTTCTCTAAAGCATACAAAACTGCTCCCTCAATTATCTTTATTGATGAGATTGACGCAATTGCTTC AAAAAGAGAGAATTCACAGCATGGGATGGAGAATCGAATGGTTTCACAGTTACTTACTTGCATGAATCAATCAGTTCTTG ATTCGGAGAGTAGTAGCTCTGTTCTTGTAATTGGAGCTACAAATAGGCCAGATGCTGTTGACCCTGCCCTTAGAAGGCCT GGTAGATTTGATTGTGAGATTAATATAGGCATTCCTGATGAATCTGCTAGGGAGGACATACTTTCCGTGCTAACTCGCGG TCTTTTAATCGAGGGTCCGATTGATCTAAAAAAGTTAGCTAGGTCTACGCCAGGATTTGCTGGCGCAGATTTGGTGTGTC TAGTTAAAATAGCGGGCAAGTTGGCGATGTTAAGAATAGTTGATGAAAGGTATGTCATGAGGGAGTTTCTTGAAGATTGG TTGATGGAGTCTTGGTCACGTGAAGAAAGGGATAAGCTTGCCCTCAAAATGTCTGATTTCGAGGAAGCTATCAAAGTTGT ACAACCGTCAACAAGAAGAGAAGGGTTCTCTTCCATTCCAAATGTAAAGTGGGAAGATGTTGGTGGGCTTGATTCGTTAA GAGATGAGTTTGAAGACTTTATTATAGGCCGTATTAAAGATCCTGAACTTTACGAGTGCTTTGGGTCCGATCATCTTGAG ACTGGATTTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGCAGCAGGAGCTAA TTTCATTTATATTCAGGGACCTGAACTACTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGGACATTGTTTAGTC GTGCAAGGACATGTGCACCTTGTATACTTTTTCTCGATGAGGTGGATGCTTTGACAACCAGACGTAGTTTAGAAGGTGGA CGGGTTACTGAAGGACTAGTGAACCAGTTGCTGACCGAGTTAGATGGAAAAGAGCAGCGGAAGGATGTTTATGTGATTGG TACAACAAATAGGCCTGAGGCGGTGGATCGCGCTATTTTACGGCCTGGTAGGCTTGGAAAACATCTTTATGTTCCTCACC CAAGTCCAGAAGATCGGGTTAAGATATTGAAAGCTCTTGCAAGAGATACGCGCCTTGATGCCGGTGTGGATTTGAATGTC ATAGGAAGAATGGAAGCTTGTGAAAACATGAGTGGTGCTGAACTTAGGGCACTGATGGGCGAAGTGGAAAGGGATGCTCG TAGAGAGGTAAGGGCCGGAACTAATACAACCCGTACCATCAAGACACATCATTTTGATGCAGCGTTCAGTAAAATCTCTG CCTCTAAGTCAGACAAGCAAAGGTTTTTTTTCACTACCGGTAATGGTCAAAGAGGTTAA
Protein sequence (LotjaGi6g1v0066700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRRNALQETLRRRVEACKSTHATAAEIVKHLRFTYSADYHRTKRQTLTRLVHEALQSTTTAAAAANTPTTRKLVHDDDG VDECRKKRRKTDEGEVRLQIVEASVPRDSERGLVRLKTNLRELYKGTVTKNVELEMGNSRKATSTVNEGEVEVKGKRFRD FGGMKKVLERLKREVLLPLCHPKEWRMLGHKPEVSGVLLHGPPGCGKTELAHAIANETRLPLYPISATALVSAGSGSSEA NIRDLFSKAYKTAPSIIFIDEIDAIASKRENSQHGMENRMVSQLLTCMNQSVLDSESSSSVLVIGATNRPDAVDPALRRP GRFDCEINIGIPDESAREDILSVLTRGLLIEGPIDLKKLARSTPGFAGADLVCLVKIAGKLAMLRIVDERYVMREFLEDW LMESWSREERDKLALKMSDFEEAIKVVQPSTRREGFSSIPNVKWEDVGGLDSLRDEFEDFIIGRIKDPELYECFGSDHLE TGFLLYGPPGCGKTLIAKAVANAAGANFIYIQGPELLNKYVGESELAVRTLFSRARTCAPCILFLDEVDALTTRRSLEGG RVTEGLVNQLLTELDGKEQRKDVYVIGTTNRPEAVDRAILRPGRLGKHLYVPHPSPEDRVKILKALARDTRLDAGVDLNV IGRMEACENMSGAELRALMGEVERDARREVRAGTNTTRTIKTHHFDAAFSKISASKSDKQRFFFTTGNGQRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 703 | 693 | 6.8E-249 | – | |
| PANTHER | 11 | 703 | 693 | 6.8E-249 | – | |
| SUPERFAMILY | 152 | 434 | 283 | 9.72E-54 | ||
| Gene3D | 157 | 432 | 276 | 1.4E-79 | – | |
| CDD | 192 | 330 | 139 | 1.8757E-24 | – | |
| SMART | 193 | 333 | 141 | 8.1E-20 | ||
| Pfam | 197 | 330 | 134 | 2.0E-39 | ||
| ProSitePatterns | 301 | 319 | 19 | - | ||
| Gene3D | 332 | 429 | 98 | 1.4E-79 | – | |
| Pfam | 354 | 397 | 44 | 5.7E-8 | ||
| SUPERFAMILY | 440 | 697 | 258 | 2.47E-57 | ||
| Gene3D | 440 | 700 | 261 | 1.2E-79 | – | |
| SMART | 479 | 615 | 137 | 3.3E-19 | ||
| CDD | 482 | 612 | 131 | 6.86108E-22 | – | |
| Pfam | 484 | 612 | 129 | 8.7E-43 | ||
| ProSitePatterns | 583 | 601 | 19 | - | ||
| Gene3D | 614 | 692 | 79 | 1.2E-79 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0066700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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