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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0081600 |
| Transcript ID | LotjaGi6g1v0081600.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:15619929..15622459) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAGCACAACTCAACACTTCACTCACCGTCCGATCCCAAGCAGAGAAAACATACGGAGAGTGAATTGTACGCATTCAA ACATTGACCCACACCCCCACTATATATAGGCCCTCATCACCAAACCTCGCAAAACTTTAGATCCTTTTCCCCCTTCAATT CAATTCGAAGAAGAACGAATCAACGTCTTTCGAGGTTAGTGTTTTCTTTCCTTTCAGGATTTTGGAAATTAGGGTTTACT GAGTGTTCGTTATCGTAATTTGTTTTACACAATTGTTCTCTATATGAAGATTTGATGTGTTTCAAATTTCGTAACAATTG AATTGTTTGATTCTGTATTCAAATTTGGTATTTTTCAATTTGTTCCACTTTTAGGGTTCTATCTTTTCTAGATTTAGGGA GTTAGGGTTTATTGATTCTTCAGTTGTGATGATTTGCTATTCATTATTGTTATCTATTTGAATTTGAATTATTAGATGTT GTTCAAATTGTGTCACGATTCGATTATTTGATTCTTCTTTTCTAATTCTCGGGTTCTCTATGCCTTTATCTTGGAGTCGA CGATAATTTTATTTGCCAAATTCATCGTTTTTATTCACATTTTTTATTTATATAAGAATTAGGTTACAATTATGTTTCAC CGGTAGCCATGATTGTTTTGATTGAGGGGACGAGAATGTCCATGATCTTTAAATGTTGTTATCTGGTTGTGTTTGTTGTT TTACTTTCTTGTGTTTTTCTGAATTTATTTTTTTGGCCGTTGACATATACAGATGGCTCGTACCAAGCAAACTGCCCGTA TGTCAACCGGTGGAAAAAGACCCAGGAAGCAGCTTGCAACCAAGGTTTGTTATGGAATCATCACATAAATCCTTATTCTC TTAATTTGTATTGGGTGCTTGAAATTTTGGCCAGCGGTTTCATGATTTTGTTTTTTCTACTTTAGGCTGCTCGTAAGTCT GTACCAACCATCGTAATTTGTTTTACATAATTGTTCTCTATATGAAGATTTGATGTGTTTCAAATTTCGTAACAATTGAA TTGTTTGATTCTGCATTCTAATTTGGTATTTTTCAATTTGTTCCACTTTTAGGGTTCTGTCTTTTCTAGATTTAGAGAAT TAGGGTTTATTGATTCTTCAGTTGTGATGATTTGCTTTACATTATTGTTATCTATTTGAATTTGAATGATTAGATGTTGT TCAAATTATGTCACGATTCAATTATTTGATTCTTCTTTACTAATTCTCGGGTTCTCTATGCCTTTATCTTGGAGCCAACG ATAATTTTATTTGCCAAATTCATTGTTGTTATTCACATTTTTTATTATATAAGAATTAGGTTACAATTATGTTTCACCGG TAGCCATGATTGTTTTGATTGAGGGGACGAGAATGTCCATGATCTTTAAATGTTGTTATTTGGTTGTGTTTGTTGTTTTA CTTTCTTGTGTTTTTCTGAATTTTTTTTCGGCCGTTGACATATACAGATGACTCGTACCAAGCAAACTGCTCGTATGTCA ACCGGTGGAAAAGCTCCCAGGAAGCAACTTGCAACCAAGGTTTGCTATGGAATCATCACCTCAATCCTTATTCTCTTAAT TTGTATTGGGTGCTTGAAATTTGGCCAACGGTTTCATGATTTTGTTTTTTCTACTTTAGGCTGCTCGTAAGTCTGTACCA ACCACAGGTGGGATCAAGAAGCTGCATCGTTACCGTCCTGGAACCGTTGCTCTTCGGTTAGTGACCCTTTTTCTGGAATC CTTTATATTTGATTGTTTTACTGGGGTTTCCATTTTCTTGATTTTGTTATGTTTACTAATAATTAAATTGTTGTTGATGG AACAGTGAGATTAGAAAGTACCAGAAGAGTACTGATGTGTTGATCAAGAAACTCCCTTTCCAGAGGTTGGTTCGTGAAAT TGCTCAGGACTTCAAGGTAATGTGTAATTACTGATGTGAGATTCAGGTCTTATGTTTTTTTTTCTTAATCATTGTCACTA AAGTTATGTATTTTTTCCTGTGCTTGCAGACTGACATGCGTTTCCAGAGTCATGCTGTCCTTGCATTGCAAGAAGCTGCT GAGGCATACCTCGTTGGACTCTTTGAGGACACCAACTTGTGCGCCATCCATGCTAAGCGTGTCACTATCATGCCTAAGGA TATCCAGTTAGCAAGGAGGATTCGTGGTGATCATACTTGATGTGGTACATTTGGTGCATGTCATATGGGGTGGTTGTGGA AGTGTTTTGTTATTTAGATTTCTTTTTGTTGAAGCTTATTAGTGGTATAGTTGCTTACTGGTAGTCTCATCAATTGTGGT AGGAAAATACTGCCATATTTTGTGAAGCTCGAATTATTAGTAATTGTGGAGTTTGGTTCTCTGGTTTTGTGAATTGCTAT CGTAATTTCTTGACAGGCCTCCAATCTTCTTAACCAAACATGGTAAGAGTCTCCCCTCCTCTCCCCAAAAATAAGACTCT TACCCTTTTGGGTTAAATGTTTTTTGTCCCTGGACTTTCAATGAGTGTTGG
CDS sequence (LotjaGi6g1v0081600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTACCAAGCAAACTGCCCGTATGTCAACCGGTGGAAAAAGACCCAGGAAGCAGCTTGCAACCAAGATGACTCG TACCAAGCAAACTGCTCGTATGTCAACCGGTGGAAAAGCTCCCAGGAAGCAACTTGCAACCAAGGCTGCTCGTAAGTCTG TACCAACCACAGGTGGGATCAAGAAGCTGCATCGTTACCGTCCTGGAACCGTTGCTCTTCGTGAGATTAGAAAGTACCAG AAGAGTACTGATGTGTTGATCAAGAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGACTGACAT GCGTTTCCAGAGTCATGCTGTCCTTGCATTGCAAGAAGCTGCTGAGGCATACCTCGTTGGACTCTTTGAGGACACCAACT TGTGCGCCATCCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCCAGTTAGCAAGGAGGATTCGTGGTGATCATACT TGA
Protein sequence (LotjaGi6g1v0081600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTKQTARMSTGGKRPRKQLATKMTRTKQTARMSTGGKAPRKQLATKAARKSVPTTGGIKKLHRYRPGTVALREIRKYQ KSTDVLIKKLPFQRLVREIAQDFKTDMRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGDHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 25 | 25 | 2.7E-104 | – | |
| MobiDBLite | 1 | 54 | 54 | - | – | |
| PANTHER | 1 | 25 | 25 | 2.7E-104 | ||
| PANTHER | 25 | 158 | 134 | 2.7E-104 | – | |
| PANTHER | 25 | 158 | 134 | 2.7E-104 | ||
| Pfam | 25 | 156 | 132 | 2.9E-51 | ||
| Gene3D | 26 | 160 | 135 | 9.8E-75 | ||
| SUPERFAMILY | 26 | 157 | 132 | 3.26E-54 | ||
| PRINTS | 27 | 41 | 15 | 1.1E-79 | ||
| ProSitePatterns | 39 | 45 | 7 | - | ||
| PRINTS | 41 | 55 | 15 | 1.1E-79 | ||
| PRINTS | 58 | 79 | 22 | 1.1E-79 | ||
| SMART | 58 | 160 | 103 | 4.5E-72 | ||
| PRINTS | 82 | 99 | 18 | 1.1E-79 | ||
| ProSitePatterns | 91 | 99 | 9 | - | ||
| PRINTS | 104 | 122 | 19 | 1.1E-79 | ||
| PRINTS | 122 | 138 | 17 | 1.1E-79 | ||
| PRINTS | 138 | 159 | 22 | 1.1E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi6g1v0081600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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