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LotjaGi6g1v0081600.5

Overview

Field Value
Gene ID LotjaGi6g1v0081600
Transcript ID LotjaGi6g1v0081600.5
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:15620260..15620972) extracted from Lotus japonicus Gifu genome v1.2.

ATGACTCGTACCAAGCAAACTGCTCGTATGTCAACCGGTGGAAAAGCTCCCAGGAAGCAACTTGCAACCAAGGTTTGCTA TGGAATCATCACCTCAATCCTTATTCTCTTAATTTGTATTGGGTGCTTGAAATTTGGCCAACGGTTTCATGATTTTGTTT TTTCTACTTTAGGCTGCTCGTAAGTCTGTACCAACCACAGGTGGGATCAAGAAGCTGCATCGTTACCGTCCTGGAACCGT TGCTCTTCGGTTAGTGACCCTTTTTCTGGAATCCTTTATATTTGATTGTTTTACTGGGGTTTCCATTTTCTTGATTTTGT TATGTTTACTAATAATTAAATTGTTGTTGATGGAACAGTGAGATTAGAAAGTACCAGAAGAGTACTGATGTGTTGATCAA GAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGGTAATGTGTAATTACTGATGTGAGATTCAGG TCTTATGTTTTTTTTTCTTAATCATTGTCACTAAAGTTATGTATTTTTTCCTGTGCTTGCAGACTGACATGCGTTTCCAG AGTCATGCTGTCCTTGCATTGCAAGAAGCTGCTGAGGCATACCTCGTTGGACTCTTTGAGGACACCAACTTGTGCGCCAT CCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCCAGTTAGCAAGGAGGATTCGTGGTGATCATACTTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0081600.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTCGTACCAAGCAAACTGCTCGTATGTCAACCGGTGGAAAAGCTCCCAGGAAGCAACTTGCAACCAAGGTTTGCTA TGGAATCATCACCTCAGCTGCTCGTAAGTCTGTACCAACCACAGGTGGGATCAAGAAGCTGCATCGTTACCGTCCTGGAA CCGTTGCTCTTCGTGAGATTAGAAAGTACCAGAAGAGTACTGATGTGTTGATCAAGAAACTCCCTTTCCAGAGGTTGGTT CGTGAAATTGCTCAGGACTTCAAGACTGACATGCGTTTCCAGAGTCATGCTGTCCTTGCATTGCAAGAAGCTGCTGAGGC ATACCTCGTTGGACTCTTTGAGGACACCAACTTGTGCGCCATCCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCC AGTTAGCAAGGAGGATTCGTGGTGATCATACTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0081600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTRTKQTARMSTGGKAPRKQLATKVCYGIITSAARKSVPTTGGIKKLHRYRPGTVALREIRKYQKSTDVLIKKLPFQRLV REIAQDFKTDMRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGDHT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11426:SF224
1 142 142 2.3E-92 –
Pfam
PF00125
1 140 140 2.2E-48
IPR007125
PANTHER
PTHR11426
1 142 142 2.3E-92
IPR000164
SUPERFAMILY
SSF47113
2 141 140 2.58E-51
IPR009072
Gene3D
G3DSA:1.10.20.10
2 144 143 5.3E-72
IPR009072
PRINTS
PR00622
3 17 15 4.2E-54
IPR000164
ProSitePatterns
PS00322
15 21 7 -
IPR000164
SMART
SM00428
42 144 103 4.5E-72
IPR000164
PRINTS
PR00622
66 83 18 4.2E-54
IPR000164
ProSitePatterns
PS00959
75 83 9 -
IPR000164
PRINTS
PR00622
88 106 19 4.2E-54
IPR000164
PRINTS
PR00622
106 122 17 4.2E-54
IPR000164
PRINTS
PR00622
122 143 22 4.2E-54
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0081600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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