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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0090000 |
| Transcript ID | LotjaGi6g1v0090000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G05200.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6; TrEMBL-Plants: tr|G7J371|G7J371_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0090000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:19241633..19242971) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGTGTTAATGCTACTACCCATTCCATAACCATTTCCAAGTACCTCCATCTCCCATTAATTACCATTTTCATTACTA CTACTACAAATACAATTGAAAAGAAAAACATGGAATGTTGGCCCCACATGGTGGTCCTTGTGATATCATCATCATCAATG TTGCAATATTCAGGTGTTGTTGATGCACAAGGAGCCATAACAACAAACCCTGCTCCTTTAGGAATCACATTCACCACCTT CAAGGACAACCTCAAGGCAACAATGAGTATCATGCTGCTAGCCTTCTTCTCCGTCTTCCTCATCATGGGCTTCATCTCCC TCTACCTCCGCCACTGCTCCTACGCCTACGGCGGCGGCGCCCGAAGCCCAATCACCACCGCGGCTGACCTCTGCTCCCGT GGCATCAACCGCCAGCTCATCGACAAGTGCCCTGTCCTCGCCGTGAAGGACCTCAGAATCGGAGAGGGTGGCAGCTGCAT CGAGTGCGCCGTGTGCCTCGCCGAGTTCCAAGACGGCGACAGCATCCGCTTGCTCCCGAAATGCCACCACGTTTTCCACC CTGATTGCATCGATTCGTGGTTGCTCTCTCACATGAGCTGTCCCGTTTGTCGCGCCACGCTCACCTCCGATGATGTTCCC GACGACATTGTCATCATCCCCATCTCCGACACCACCACAACCACCACCGCCACCGCCACGGAACCTGAACCACCGGCTAA CGGAAGTAGCAGTAGCACTATTAGTAGCAGCGTTACGGTTACAGAGATAGAGGAAGTTGTAACGGCACCTGAAGAAGAAG GTGAAGGTGAGATCAGCAATAGTATTGTTTTTCTTGCACGCGAATCGAGAATGATGGTGAGGTCACATTCAACTGGTCAC TCTTTGGTGGGGCCCGAGGAGAAGGTTAAGGTGTGGGACAGGTACATGTTAAGGTTGCCAGAGCATGTGAGGAGGAAACG GATTCTTCGTGAGAATGCGGTTTTTCCGGGTGAGTGGAGTGCGAAGAGAGCATGGGAAGGAGGTGGTGGAATTGGTAATA ACAATGTTGAACGGTGGTGGTGGTCTTTGTCGATGACTCCACCTTTGGGATTTCGTTCGGGTGGCGGCACTAGTGGAGGC GATTGTAACGGTGGTAATTTTTTAGGGGCATGTTGGACGCCAGTTAGAGTATCTCCAATTCAAGGTTCTTAGTTCTTATT TTTGAGTTAAGAATTAAGAATTAAGAGCTTTACCATTAGAGGTGCTGAGATGAAGTTCTTAGTTCTTTAAAATAAGAACT CAGTTCTTATATAAGGAATTTTACTTTTTGAGTTATTAACTTAAAATATTAATTATTTC
CDS sequence (LotjaGi6g1v0090000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATGTTGGCCCCACATGGTGGTCCTTGTGATATCATCATCATCAATGTTGCAATATTCAGGTGTTGTTGATGCACA AGGAGCCATAACAACAAACCCTGCTCCTTTAGGAATCACATTCACCACCTTCAAGGACAACCTCAAGGCAACAATGAGTA TCATGCTGCTAGCCTTCTTCTCCGTCTTCCTCATCATGGGCTTCATCTCCCTCTACCTCCGCCACTGCTCCTACGCCTAC GGCGGCGGCGCCCGAAGCCCAATCACCACCGCGGCTGACCTCTGCTCCCGTGGCATCAACCGCCAGCTCATCGACAAGTG CCCTGTCCTCGCCGTGAAGGACCTCAGAATCGGAGAGGGTGGCAGCTGCATCGAGTGCGCCGTGTGCCTCGCCGAGTTCC AAGACGGCGACAGCATCCGCTTGCTCCCGAAATGCCACCACGTTTTCCACCCTGATTGCATCGATTCGTGGTTGCTCTCT CACATGAGCTGTCCCGTTTGTCGCGCCACGCTCACCTCCGATGATGTTCCCGACGACATTGTCATCATCCCCATCTCCGA CACCACCACAACCACCACCGCCACCGCCACGGAACCTGAACCACCGGCTAACGGAAGTAGCAGTAGCACTATTAGTAGCA GCGTTACGGTTACAGAGATAGAGGAAGTTGTAACGGCACCTGAAGAAGAAGGTGAAGGTGAGATCAGCAATAGTATTGTT TTTCTTGCACGCGAATCGAGAATGATGGTGAGGTCACATTCAACTGGTCACTCTTTGGTGGGGCCCGAGGAGAAGGTTAA GGTGTGGGACAGGTACATGTTAAGGTTGCCAGAGCATGTGAGGAGGAAACGGATTCTTCGTGAGAATGCGGTTTTTCCGG GTGAGTGGAGTGCGAAGAGAGCATGGGAAGGAGGTGGTGGAATTGGTAATAACAATGTTGAACGGTGGTGGTGGTCTTTG TCGATGACTCCACCTTTGGGATTTCGTTCGGGTGGCGGCACTAGTGGAGGCGATTGTAACGGTGGTAATTTTTTAGGGGC ATGTTGGACGCCAGTTAGAGTATCTCCAATTCAAGGTTCTTAG
Protein sequence (LotjaGi6g1v0090000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MECWPHMVVLVISSSSMLQYSGVVDAQGAITTNPAPLGITFTTFKDNLKATMSIMLLAFFSVFLIMGFISLYLRHCSYAY GGGARSPITTAADLCSRGINRQLIDKCPVLAVKDLRIGEGGSCIECAVCLAEFQDGDSIRLLPKCHHVFHPDCIDSWLLS HMSCPVCRATLTSDDVPDDIVIIPISDTTTTTTATATEPEPPANGSSSSTISSSVTVTEIEEVVTAPEEEGEGEISNSIV FLARESRMMVRSHSTGHSLVGPEEKVKVWDRYMLRLPEHVRRKRILRENAVFPGEWSAKRAWEGGGGIGNNNVERWWWSL SMTPPLGFRSGGGTSGGDCNGGNFLGACWTPVRVSPIQGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 49 | 23 | - | – | |
| PANTHER | 46 | 287 | 242 | 4.1E-58 | – | |
| PANTHER | 46 | 287 | 242 | 4.1E-58 | – | |
| Phobius | 50 | 73 | 24 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 74 | 360 | 287 | - | – | |
| Gene3D | 99 | 176 | 78 | 3.8E-19 | ||
| SUPERFAMILY | 100 | 174 | 75 | 2.15E-20 | – | |
| CDD | 125 | 168 | 44 | 2.40216E-18 | – | |
| Pfam | 125 | 168 | 44 | 6.8E-13 | ||
| ProSiteProfiles | 126 | 168 | 43 | 12.416 | ||
| SMART | 126 | 167 | 42 | 3.7E-6 | ||
| MobiDBLite | 191 | 216 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0090000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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