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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097200 |
| Transcript ID | LotjaGi6g1v0097200.1 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G26100.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2; TrEMBL-Plants: tr|A0A151U8S5|A0A151U8S5_CAJCA Putative E3 ubiquitin-protein ligase HERC2; Found in the gene: LotjaGi6g1v0097200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21086370..21093494) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGAGAGGATAAAAGCTAAAATTATTCATTCCATCTCATTCATTCATTCACTCTCAGAAATCAAAGTTAAAAACTCTC TCTCTCTTTGTCTTTCTCTTTCTCTATCTATCTCCTCATCTTGCAAACTCCCCAACACAACACACTCCAACGTTAATCGA TCAGAAACCACCACCACCACCTCTGTCCCTGTTTGTTTGATCCACAAAAACGTAAAAAACCCGGTGTATGCGATTCTCCT CCCACCGATGATGCAGATTCAATTTCAGAAATCACGGGTGTCTATGATACGTAATCACCGTTTCCATCTCTATTTTCATT TGATCTGTCACCGATTACAATCCCACTCGATCATCATCGGAAACTTGTTCATCATGTGATTTTGTTCTGAATTAATTCCC TTTTTTTCTTTTAACTTTTCTGGTTGCGTATTCAGCAAGTGTTTCTCTCTGCTGAATTTGATTACTGATCTGGGAAACTC ACACCCAGAAAAATATAGGGACAAATCATGGAAAAAAAATATACCCTTTGAATAATTGATTGCAAAAAGCTATTTTAATT TGAGTCCTCTGTTTCTGGGTTTTTAGCCATTTTACTGGTTTGATTGTTCATTTTGATTTTGATGAATTGGAAATTTTCTT TCTTTTTTGTTTTAGAATTTAGAATATACCATGGTTTGGGGGAATGGATATATACTATACTTCTGCTCAAAGTTTTCGTC TTTGGATTCACCTTGAAATATTCTGTTTTTCTCATACTTTTTCTTCCTATGGATCATCTAAGTTAAATCAAGCCTTTTAT AAAACGATCGGTGTATGATTTGATTTTCTACTCTGGCTCTGGTTTATTTTATTTCCCATTTGGTAATTGTAAACCTTTTT TTTTTCTTTTTCTTTTTGATCCTCAAGGTTCATGATTCTGTGGTTCTAAATTCATGTCTTATGGTGCTTTTAATCCATAA GATCGTAACAAACTGACTGAGTTAGACGATCATATAATTCAGCTTTTTATTTACTTATTTATTTTTTGTCACATAACGAG TTGTGAGTATGTTTTTCTTTGTAGGTTTGAGGCTTGAGATTTGCTAGTCAATTATATTTTTGAGGTACACACATACACAT TTGCAACTTAGTATAAGAACATGTAAAGTTTTAGATGCTATAATTAGAGAAACAGAGAAATTAATTAAAGTAGTAATAAA TTTGCACATACTTTTCATAATTCTCAGAAGTTTAGATCTTTTCTTCTGCAAAGTTTGGGCACTGCCTAAAGTTAACAGCA GTGCCCATGGATGCCACAACCAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGT TGCCACACAACTTCCACCATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTG CTAATCCCTCCATTGTCCTCCATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAAGTTCT GTGCCTTATCTGCATTGGATGATGATCCATTGTCCCCGTTTGATGTTCTTTTCCCTGTCCTACCAATCAAATTGTGTCAT GCAGGTGTGTGGTTTTTAAATGACATTACATAATTTGATTGGTGAGCAGGGAAAGGGAACATCAACTGGGATAGAGGGTT TCGGTCCATATGCATTTCAGCTTTGAGATTGTTCTTTAATAGTATCAATGGCGATAATGCTGACTTTGTTTTTGTTGTGC CTGATGCAGGCAACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGC TGCACTAGACATGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTG GAGGTTCTTGGAAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCA GGTCCTGGTCACAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACA TGGCACCACTGATGAGGAATGGCGACCTCGACCAATAAGGTTGGAACTTCTGGGAACATGTGGATATCCCCTCTATCCTT ACAGCTTATCCTTAAACTTAAGAACCCGTTTGGGTGCAAACCAAAAGCACTTATTGGAGCTTATTTGGTGCTTTTCCTAG TAGATAAGCTCCAACAAGTCCATATCCAAATGGGCTCTAAGGCTAACTGGAATTTGAACTAGATGATTGAACTCAATTAT GTTTCAGGACTTTGCAAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGG CAGGTTTATGCATTTGGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACA ATTAGTAGAGTCTTTGAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAG GCAGGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCT TTATTAGGAGCTCTGGAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACC CACCGGAATGTGAGCTCTAACTATATCTCCTTTACTTGCGTATATTTGCTTTTGTCAGGACATTTGTTGAGAATCCCTTA TTGACTAGATATATAGGCAAATAAGTGTTTATAAAGGACCATGTCTAAGAGCATTAGAGGTCCATATCCTCAAGCTCGGC ATTCATGGAAGTGTTGATGATACTTATTCATATTTCAATTAGTTTATACATGAAACTTCATTCTTATTGTTATTACTATC TGAATGATTATGATGACAACCTTGAGAACTTACAGGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACA CGGAACAAGAACTGATGAAAAGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAG CTGGTGCTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGG CATGGGAATGAAGATTGTGAATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGG AGACTACACAACATTTGTAGTGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATA ATGCTGGAAATGATGTACAGGTCTGTTTTGTTTCTGCATTTTTACCTGTTTGATTTGAGTTATATTTGCATGACTGAGTT GAAAAATGATGTGCTTCACCGTTTTCTTTCTATGTAATAAGTTTTATCTTATGAAGCTCACATTGTGTTTTATGTGCTAA CTATTGTTTCGCATCCCAACCTGAATTATAGATGTAGCATTAGCCTGACCATTACCTGAATGAGATGTTATAATACGATA AGAACGTTAGGAGAACCGTACCACAAAGGCGCCGTTGTAGTTGAAAAGCTTATGACCCCCCCCCCCCCCCCCCCCAACAC ACACACACACACACTAGACTCTCATACTTCCAATGCGGGACCCAAAGTCGAATTGGATTCTGACATCAGGCTGGCTGTGC ACTAGCTCCTTTGACCACAGCAAAGCTGGCATCCCTGCCCAAACCGCATTTTTCAGCTGAGAGACATGGTGGAAGACTCT GATACCAAATGATAAGAACCTTGGGAGAACCATATCACCCAAGTTAGGTGGCAAAGATTCTGATACCAATTGATAAGAAC CTTGGGACTTGGGAGAACCATACCTGGTCTAATTCCTTATAAACCTCACTCTAGAATCTCATACTTTTAATGTAGGCCTC GAGCCCTATACCTTGCAATTGGATCCTAGCATAATACTAATGGCTATAGTGCATTCAATTATATGTTAATATTTTTATGT CAGTATTAGTTATACATCTAATAGAAATATTTTATTCAACCATTTGTACATGTACAGGGAAACAGACATGCAAATGTGTT AAGTCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGA ATGCTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAG CTTGTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAACTGTTTCTGCTGCCTTTACT TCTCAATTCTTTACACCAGCATGCATAGCATTTAGTTTTCAAATTCCTTGTATATTTGTAAATATAATCAAAGAATGCAT CGTGAAGGTCCAAGGTAGGTAACACCTAACAAGGGCCTTAGCTTCTTTCTTATGGTTTGTTCATATCATCACTCGTAGGC TTCAACTGGTTGTTTATAGTTGATAAAGGTTCATTTGCATCGTAGTTTGTCTTGAATTGTTTCCACCTATAATTTGCTTA GAAAAAGTTCGTCCCATTTAGCATTCATTCATTATCAAAATCCTCATGGTTTGGTTTATTTACTCTTTGTACCCCGGTGA TCAAGAACTGTGGCAATCTTCTTTTCTTAGGGTAAGGTTAGGTGACAAATCAAGAAATAGAACGTGGGATGCTTTAACAT TCGACATTGAACACTGCAGCCTCTAGTGATAGAAATATTCTTTTGTTAGCTTAGATTACTGATAGTATAGGCTCACTAGG CCTTAGTGTTCTAATGTTGTATTGAACCGGCACTGAAATTGGTTTACACTTTGGTTAAGAGAGAAATTGGGAAGTGAGAA GGTAGGTTGAGAAAAAGTGGTGAGAATGAAAAAGTTTTATGTTTTTGGATATGATAAAAATAGAGAGATGAGAAAGAGTG AAGTGGAGAAAAGAGAAACAATACTTTTTATATTAACAGATAGTTGTATCCCATATGCCACCATGCATGGGCAAAAAAAT TGAATTATTTAAAAAAAAAATACAAAATAGGGGCAAAAAATATTATTTACACAAATGGGTGAACTTGGCCAGTCGGGGGC ATATGTGACTAGAAGGTGGGATTCACCCCACTTAGATAGAAAGTACGTAATGCGGGGAAAAACTTTCATGATTTGTATAT AAATTTATAATTCAAATTTGAAAGATAACTTCATTCGCATTTCTTTAATGTAAGTAGTCAACATCTTATTATATTTTATG TTGCTCTGTTAGGGTTTTGTCTCCCTAGCAGCCTTACCGTCTACGACGTTTCTACAACCGTCGGGGCGGGTGTTGCTGGT TCTATGGCTTCCATTACTCGCGACCTGGACGTTGGAGGAGAGGAGAGGCTTGATGCTCTCGCAAACGAAAAATCGAAGTC TGCATCTTCGAGAGGTGATGGGTCGAATTTTGGTCGGGGGAGTGGCACGATCTGAGATGCTTCTTGTATGTCGATGGCAT CTCTGCTGTTGTTTCTTTAGAGCGGATTCGAGAGCTCTTTTCTTAGCATGGGCGTATCAGGAGGGTGTAAGTGCAGATTC AAAGGAGGCCAAGGAGAAGGTGGCGATTCAGCTTTGTACATATGTCTTCTGTCAACGACGCTGCTGCGACTCGTTCTAAG CTGGACAAAATCCGGATCGACAACGCTTACTTAGCCGTGATAGAGGCCAAGTCTTCTCGTAGGAATGGTATTTCTCCCAG GCTTCCTATCGAAACCTGGCCGCAGGCGTCTCCTTCCTCTGTTGTTTCTCCCAGACTTCCTATTGGAACCATATCGTAGG CTTCTCCTTCCTCTACCGGGGAGTGCCATGGTCGTATGCACCTTGATGAGGTCTTGTTCCCAAAGGTTTTTGGGCAGACC GTGCAGGTTATCGAGGAGCCTTATGGGTCGTTGGTTTCTGTCCATGTTGGGCATGTTATTTCTGTTCCATATACTCCTTC GTCTGTTGGTACCTTGGCTGGTGCAGATCATTCTCAATCTGCCGTGAGGTTTTCGTTAGTCACTTCGCCTAGAGAGGATT TTAAGGTTTACGTTGATGACGATTTGAAGTTTTGCATGAAAGCTGGGTTTGTTTGTGAAAAAGACGAGTTGGATTGGCGT TCATTCGGTGATAATATTCTCTGTGCTATCATTTCTGATTTTGATGCGAGGATGAATGAGTTGAGGGTCACGCCGGATTT AGATTTTGTTGTTCGATCAGAATTTTGGGTCTGTGTTGCAAAATTTGCTCCCCCAAAATTTGGGAGGAATGGAATGGAAC AAAAAACTGGTGAACAATTAAAAATATACAATTACAGATTTATCCTCACTAAATTTCTCTTCCTGCATTCTCTTCGGTCA TTTTTTTTCCCAGTTTGTTCATCTTGGTCCCCAACTAGCCAATTACGTATATTAAGTGTCCTATGACAGTTTTTTTCAAC CAAATTCTCTTCTAAATTGTAATATTACTTGGAATTTTGTAACAGATCTTATTCAATTTGAATTTATATTTAGTTTTATG TTTGAAAAAGAAAACCAAAGTGTTACCGTTAACTGCTACATGAAAATATAAACATACAAATACCGTCTCCATTGATCACA ATACAAACCATCCACAAAACAAAACAAAGCAAAATACAGTATAAGAATTGGACACACAAACAAAATGAAATAATGCCAAC TGTCTTTCTTCTAAATGAATAATCTAAACAAGAATCAAAGTTTGCTGCATCCTCCTTTAAAATTGGTGTCCACCAATAGG CTGGTAGTGTTTTGCGTTGTAGTTCTTAGTCAATTAATAATTTGACTTGTTATATTCTCATTGTGATGCTTGAAGATGGA AGTAAATGTCACTGTCATCACCATTAACAGGATAGCTTCGATGATGGCCTTTATAATAAGGGTTATATTGGAATAAAAAA ATTAAAACTGATTTATCCATCTATTATGCAAACAATAGAGTGGTAGATTTATTCCATTCTATCATAAAGTGTTCGAATAA TGGAA
CDS sequence (LotjaGi6g1v0097200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATAATGCTGACTTTGTTTTTGTTGTGCCTGATGCAGGCAACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGC TCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACTAGACATGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATA TGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTTCTTGGAAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCC TGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCTGGTCACAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTC ATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCACCACTGATGAGGAATGGCGACCTCGACCAATAAGGACTTTGC AAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGGCAGGTTTATGCATTT GGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACAATTAGTAGAGTCTTT GAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAGGCAGGGTTTATACAT TTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCTTTATTAGGAGCTCTG GAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACCCACCGGAATGTCAGT GTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAACAAGAACTGATGAAAAGTTCCCTCGTCTGATCGAAC AGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGTGCTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGT GTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGGAATGAAGATTGTGAATCTGTACCTAAGGTAGTGGA AGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACTACACAACATTTGTAGTGTCTGATGATGGTGATGTGT ACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCTGGAAATGATGTACAGGGAAACAGACATGCAAATGTG TTAAGTCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTG GAATGCTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTG AGCTTGTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAA
Protein sequence (LotjaGi6g1v0097200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIMLTLFLLCLMQATCHFFKQPANFAPDFTLSLSELAALDMCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEA CSRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLQGIRIIQAAAGAGRTMLISDSGQVYAF GKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGKLGHHADPSDVEPHPLLGAL EDIPVVQIAAGYCYLLCLACQPTGMSVYSVGCGLGGKLGHGTRTDEKFPRLIEQFQMLNLQPMVVAAGAWHAAVVGKDGR VCTWGWGRYGCLGHGNEDCESVPKVVEALTNVKAVYVATGDYTTFVVSDDGDVYSFGCGESASLGHNAGNDVQGNRHANV LSPQLVTSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVENQTERGNPERVDIGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| PANTHER | 12 | 472 | 461 | 2.5E-287 | – | |
| PANTHER | 12 | 472 | 461 | 2.5E-287 | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 473 | 456 | - | – | |
| Gene3D | 77 | 260 | 184 | 2.1E-47 | ||
| PRINTS | 86 | 99 | 14 | 4.9E-16 | ||
| SUPERFAMILY | 87 | 416 | 330 | 4.51E-71 | ||
| Pfam | 102 | 151 | 50 | 1.5E-11 | ||
| ProSiteProfiles | 103 | 154 | 52 | 14.705 | ||
| PRINTS | 105 | 121 | 17 | 4.9E-16 | ||
| Pfam | 154 | 205 | 52 | 2.0E-4 | ||
| PRINTS | 155 | 171 | 17 | 4.9E-16 | ||
| ProSiteProfiles | 155 | 208 | 54 | 11.268 | ||
| PRINTS | 195 | 211 | 17 | 4.9E-16 | ||
| ProSiteProfiles | 209 | 261 | 53 | 10.404 | ||
| PRINTS | 211 | 225 | 15 | 4.9E-16 | ||
| Gene3D | 261 | 472 | 212 | 3.0E-50 | ||
| ProSiteProfiles | 265 | 318 | 54 | 10.986 | ||
| Pfam | 266 | 315 | 50 | 8.8E-5 | ||
| ProSitePatterns | 305 | 315 | 11 | - | ||
| PRINTS | 308 | 326 | 19 | 4.9E-16 | ||
| Pfam | 318 | 367 | 50 | 2.9E-13 | ||
| ProSiteProfiles | 319 | 370 | 52 | 13.539 | ||
| PRINTS | 366 | 387 | 22 | 4.9E-16 | ||
| Pfam | 370 | 420 | 51 | 1.5E-6 | ||
| ProSiteProfiles | 371 | 437 | 67 | 9.881 | ||
| ProSiteProfiles | 438 | 473 | 36 | 9.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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