Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0097200 |
Transcript ID | LotjaGi6g1v0097200.4 |
Related isoforms 7 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G26100.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2; TrEMBL-Plants: tr|A0A151U8S5|A0A151U8S5_CAJCA Putative E3 ubiquitin-protein ligase HERC2; Found in the gene: LotjaGi6g1v0097200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21086889..21093474) extracted from Lotus japonicus Gifu genome v1.2.
AAATTATTCATTCCATCTCATTCATTCATTCACTCTCAGAAATCAAAGTTAAAAACTCTCTCTCTCTTTGTCTTTCTCTT TCTCTATCTATCTCCTCATCTTGCAAACTCCCCAACACAACACACTCCAACGTTAATCGATCAGAAACCACCACCACCAC CTCTGTCCCTGTTTGTTTGATCCACAAAAACGTAAAAAACCCGGTGTATGCGATTCTCCTCCCACCGATGATGCAGATTC AATTTCAGAAATCACGGGTGTCTATGATACGTAATCACCGTTTCCATCTCTATTTTCATTTGATCTGTCACCGATTACAA TCCCACTCGATCATCATCGGAAACTTGTTCATCATGTGATTTTGTTCTGAATTAATTCCCTTTTTTTCTTTTAACTTTTC TGGTTGCGTATTCAGCAAGTGTTTCTCTCTGCTGAATTTGATTACTGATCTGGGAAACTCACACCCAGAAAAATATAGGG ACAAATCATGGAAAAAAAATATACCCTTTGAATAATTGATTGCAAAAAGCTATTTTAATTTGAGTCCTCTGTTTCTGGGT TTTTAGCCATTTTACTGGTTTGATTGTTCATTTTGATTTTGATGAATTGGAAATTTTCTTTCTTTTTTGTTTTAGAATTT AGAATATACCATGGTTTGGGGGAATGGATATATACTATACTTCTGCTCAAAGTTTTCGTCTTTGGATTCACCTTGAAATA TTCTGTTTTTCTCATACTTTTTCTTCCTATGGATCATCTAAGTTAAATCAAGCCTTTTATAAAACGATCGGTGTATGATT TGATTTTCTACTCTGGCTCTGGTTTATTTTATTTCCCATTTGGTAATTGTAAACCTTTTTTTTTTCTTTTTCTTTTTGAT CCTCAAGGTTCATGATTCTGTGGTTCTAAATTCATGTCTTATGGTGCTTTTAATCCATAAGATCGTAACAAACTGACTGA GTTAGACGATCATATAATTCAGCTTTTTATTTACTTATTTATTTTTTGTCACATAACGAGTTGTGAGTATGTTTTTCTTT GTAGGTTTGAGGCTTGAGATTTGCTAGTCAATTATATTTTTGAGGTACACACATACACATTTGCAACTTAGTATAAGAAC ATGTAAAGTTTTAGATGCTATAATTAGAGAAACAGAGAAATTAATTAAAGTAGTAATAAATTTGCACATACTTTTCATAA TTCTCAGAAGTTTAGATCTTTTCTTCTGCAAAGTTTGGGCACTGCCTAAAGTTAACAGCAGTGCCCATGGATGCCACAAC CAGCGGAAACCCAACTCTCCAATACCATAACATCCCTGACCAGCCAATTGCTGCCATTGTTGCCACACAACTTCCACCAT TTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCAACTCCAGGAGAGTTTCCCTTGTCTGCTAATCCCTCCATTGTCCTC CATGTCCTCACGGCTTGTAATTTGGATCCTCAAGACCTTGCTAAACTAGAGGCAAGTTCTGTGCCTTATCTGCATTGGAT GATGATCCATTGTCCCCGTTTGATGTTCTTTTCCCTGTCCTACCAATCAAATTGTGTCATGCAGGTGTGTGGTTTTTAAA TGACATTACATAATTTGATTGGTGAGCAGGGAAAGGGAACATCAACTGGGATAGAGGGTTTCGGTCCATATGCATTTCAG CTTTGAGATTGTTCTTTAATAGTATCAATGGCGATAATGCTGACTTTGTTTTTGTTGTGCCTGATGCAGGCAACATGCCA CTTCTTCAAGCAGCCGGCGAACTTTGCTCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACTAGACATGTGCCAAA AGAGAGCCATCTTTAAGCCAATGAATATGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTTCTTGGAAATTGGTT CTGAGGTATTTGCTGGCTGGAGAAGCCTGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCTGGTCACAGCATTGC TGTGACATCAAAAGGGGCTGTTTACTCATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCACCACTGATGAGGAAT GGCGACCTCGACCAATAAGGTTGGAACTTCTGGGAACATGTGGATATCCCCTCTATCCTTACAGCTTATCCTTAAACTTA AGAACCCGTTTGGGTGCAAACCAAAAGCACTTATTGGAGCTTATTTGGTGCTTTTCCTAGTAGATAAGCTCCAACAAGTC CATATCCAAATGGGCTCTAAGGCTAACTGGAATTTGAACTAGATGATTGAACTCAATTATGTTTCAGGACTTTGCAAGGC ATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGGCAGGTTTATGCATTTGGGAA AGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACAATTAGTAGAGTCTTTGAAAA ATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAGGCAGGGTTTATACATTTTCT TGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCTTTATTAGGAGCTCTGGAAGA CATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACCCACCGGAATGTGAGCTCTAA CTATATCTCCTTTACTTGCGTATATTTGCTTTTGTCAGGACATTTGTTGAGAATCCCTTATTGACTAGATATATAGGCAA ATAAGTGTTTATAAAGGACCATGTCTAAGAGCATTAGAGGTCCATATCCTCAAGCTCGGCATTCATGGAAGTGTTGATGA TACTTATTCATATTTCAATTAGTTTATACATGAAACTTCATTCTTATTGTTATTACTATCTGAATGATTATGATGACAAC CTTGAGAACTTACAGGTCAGTGTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAACAAGAACTGATGAAA AGTTCCCTCGTCTGATCGAACAGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGTGCTTGGCATGCTGCT GTGGTAGGGAAGGATGGCCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGGAATGAAGATTGTGA ATCTGTACCTAAGGTAGTGGAAGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACTACACAACATTTGTAG TGTCTGATGATGGTGATGTGTACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCTGGAAATGATGTACAG GTCTGTTTTGTTTCTGCATTTTTACCTGTTTGATTTGAGTTATATTTGCATGACTGAGTTGAAAAATGATGTGCTTCACC GTTTTCTTTCTATGTAATAAGTTTTATCTTATGAAGCTCACATTGTGTTTTATGTGCTAACTATTGTTTCGCATCCCAAC CTGAATTATAGATGTAGCATTAGCCTGACCATTACCTGAATGAGATGTTATAATACGATAAGAACGTTAGGAGAACCGTA CCACAAAGGCGCCGTTGTAGTTGAAAAGCTTATGACCCCCCCCCCCCCCCCCCCCAACACACACACACACACACTAGACT CTCATACTTCCAATGCGGGACCCAAAGTCGAATTGGATTCTGACATCAGGCTGGCTGTGCACTAGCTCCTTTGACCACAG CAAAGCTGGCATCCCTGCCCAAACCGCATTTTTCAGCTGAGAGACATGGTGGAAGACTCTGATACCAAATGATAAGAACC TTGGGAGAACCATATCACCCAAGTTAGGTGGCAAAGATTCTGATACCAATTGATAAGAACCTTGGGACTTGGGAGAACCA TACCTGGTCTAATTCCTTATAAACCTCACTCTAGAATCTCATACTTTTAATGTAGGCCTCGAGCCCTATACCTTGCAATT GGATCCTAGCATAATACTAATGGCTATAGTGCATTCAATTATATGTTAATATTTTTATGTCAGTATTAGTTATACATCTA ATAGAAATATTTTATTCAACCATTTGTACATGTACAGGGAAACAGACATGCAAATGTGTTAAGTCCACAGCTTGTGACTT CACTGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTGGAATGCTCACACCTTTGCACTC ACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTGAGCTTGTTGAAAACCAGACTGA AAGGGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAACTGTTTCTGCTGCCTTTACTTCTCAATTCTTTACACCAGC ATGCATAGCATTTAGTTTTCAAATTCCTTGTATATTTGTAAATATAATCAAAGAATGCATCGTGAAGGTCCAAGGTAGGT AACACCTAACAAGGGCCTTAGCTTCTTTCTTATGGTTTGTTCATATCATCACTCGTAGGCTTCAACTGGTTGTTTATAGT TGATAAAGGTTCATTTGCATCGTAGTTTGTCTTGAATTGTTTCCACCTATAATTTGCTTAGAAAAAGTTCGTCCCATTTA GCATTCATTCATTATCAAAATCCTCATGGTTTGGTTTATTTACTCTTTGTACCCCGGTGATCAAGAACTGTGGCAATCTT CTTTTCTTAGGGTAAGGTTAGGTGACAAATCAAGAAATAGAACGTGGGATGCTTTAACATTCGACATTGAACACTGCAGC CTCTAGTGATAGAAATATTCTTTTGTTAGCTTAGATTACTGATAGTATAGGCTCACTAGGCCTTAGTGTTCTAATGTTGT ATTGAACCGGCACTGAAATTGGTTTACACTTTGGTTAAGAGAGAAATTGGGAAGTGAGAAGGTAGGTTGAGAAAAAGTGG TGAGAATGAAAAAGTTTTATGTTTTTGGATATGATAAAAATAGAGAGATGAGAAAGAGTGAAGTGGAGAAAAGAGAAACA ATACTTTTTATATTAACAGATAGTTGTATCCCATATGCCACCATGCATGGGCAAAAAAATTGAATTATTTAAAAAAAAAA TACAAAATAGGGGCAAAAAATATTATTTACACAAATGGGTGAACTTGGCCAGTCGGGGGCATATGTGACTAGAAGGTGGG ATTCACCCCACTTAGATAGAAAGTACGTAATGCGGGGAAAAACTTTCATGATTTGTATATAAATTTATAATTCAAATTTG AAAGATAACTTCATTCGCATTTCTTTAATGTAAGTAGTCAACATCTTATTATATTTTATGTTGCTCTGTTAGGGTTTTGT CTCCCTAGCAGCCTTACCGTCTACGACGTTTCTACAACCGTCGGGGCGGGTGTTGCTGGTTCTATGGCTTCCATTACTCG CGACCTGGACGTTGGAGGAGAGGAGAGGCTTGATGCTCTCGCAAACGAAAAATCGAAGTCTGCATCTTCGAGAGGTGATG GGTCGAATTTTGGTCGGGGGAGTGGCACGATCTGAGATGCTTCTTGTATGTCGATGGCATCTCTGCTGTTGTTTCTTTAG AGCGGATTCGAGAGCTCTTTTCTTAGCATGGGCGTATCAGGAGGGTGTAAGTGCAGATTCAAAGGAGGCCAAGGAGAAGG TGGCGATTCAGCTTTGTACATATGTCTTCTGTCAACGACGCTGCTGCGACTCGTTCTAAGCTGGACAAAATCCGGATCGA CAACGCTTACTTAGCCGTGATAGAGGCCAAGTCTTCTCGTAGGAATGGTATTTCTCCCAGGCTTCCTATCGAAACCTGGC CGCAGGCGTCTCCTTCCTCTGTTGTTTCTCCCAGACTTCCTATTGGAACCATATCGTAGGCTTCTCCTTCCTCTACCGGG GAGTGCCATGGTCGTATGCACCTTGATGAGGTCTTGTTCCCAAAGGTTTTTGGGCAGACCGTGCAGGTTATCGAGGAGCC TTATGGGTCGTTGGTTTCTGTCCATGTTGGGCATGTTATTTCTGTTCCATATACTCCTTCGTCTGTTGGTACCTTGGCTG GTGCAGATCATTCTCAATCTGCCGTGAGGTTTTCGTTAGTCACTTCGCCTAGAGAGGATTTTAAGGTTTACGTTGATGAC GATTTGAAGTTTTGCATGAAAGCTGGGTTTGTTTGTGAAAAAGACGAGTTGGATTGGCGTTCATTCGGTGATAATATTCT CTGTGCTATCATTTCTGATTTTGATGCGAGGATGAATGAGTTGAGGGTCACGCCGGATTTAGATTTTGTTGTTCGATCAG AATTTTGGGTCTGTGTTGCAAAATTTGCTCCCCCAAAATTTGGGAGGAATGGAATGGAACAAAAAACTGGTGAACAATTA AAAATATACAATTACAGATTTATCCTCACTAAATTTCTCTTCCTGCATTCTCTTCGGTCATTTTTTTTCCCAGTTTGTTC ATCTTGGTCCCCAACTAGCCAATTACGTATATTAAGTGTCCTATGACAGTTTTTTTCAACCAAATTCTCTTCTAAATTGT AATATTACTTGGAATTTTGTAACAGA
CDS sequence (LotjaGi6g1v0097200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATAATGCTGACTTTGTTTTTGTTGTGCCTGATGCAGGCAACATGCCACTTCTTCAAGCAGCCGGCGAACTTTGC TCCGGATTTCACTTTGTCCTTATCCGAGCTTGCTGCACTAGACATGTGCCAAAAGAGAGCCATCTTTAAGCCAATGAATA TGGAAGAGCGAGAAAATTTGAAGCAAAGATGTGGAGGTTCTTGGAAATTGGTTCTGAGGTATTTGCTGGCTGGAGAAGCC TGTTCCAGGAGGGAGAAATCACAGGCAATAGCAGGTCCTGGTCACAGCATTGCTGTGACATCAAAAGGGGCTGTTTACTC ATTTGGGTCTAACAGTTCAGGACAACTTGGACATGGCACCACTGATGAGGAATGGCGACCTCGACCAATAAGGACTTTGC AAGGCATCAGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGATCAGTGATTCTGGGCAGGTTTATGCATTT GGGAAAGACTCTTTTGGGGATGCTGAGTATGGGGTTCAAGGATCTAAAACAGTTATATCTCCACAATTAGTAGAGTCTTT GAAAAATATATTTGTTGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTACTGTCAAGAGAAGGCAGGGTTTATACAT TTTCTTGGGGTAGTGATGGCAAACTCGGTCACCACGCCGATCCAAGTGATGTGGAGCCCCATCCTTTATTAGGAGCTCTG GAAGACATACCAGTAGTGCAAATTGCTGCTGGATACTGCTACCTTCTTTGTCTAGCTTGTCAACCCACCGGAATGTCAGT GTACTCTGTTGGGTGTGGTTTGGGAGGCAAGCTTGGACACGGAACAAGAACTGATGAAAAGTTCCCTCGTCTGATCGAAC AGTTTCAGATGTTAAACCTTCAACCTATGGTTGTTGCAGCTGGTGCTTGGCATGCTGCTGTGGTAGGGAAGGATGGCCGT GTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGGAATGAAGATTGTGAATCTGTACCTAAGGTAGTGGA AGCATTGACTAATGTCAAAGCGGTTTATGTTGCAACAGGAGACTACACAACATTTGTAGTGTCTGATGATGGTGATGTGT ACTCATTTGGGTGTGGGGAATCTGCTAGTCTCGGGCATAATGCTGGAAATGATGTACAGGGAAACAGACATGCAAATGTG TTAAGTCCACAGCTTGTGACTTCACTGAAACAGATCAATGAAAGGGTGGTGCAGATTAGCCTGACCAATTCCATATACTG GAATGCTCACACCTTTGCACTCACTGAATCAGGGAAGCTGTATGCATTTGGGGCTGGAGACAAAGGACAGTTAGGAATTG AGCTTGTTGAAAACCAGACTGAAAGGGGGAATCCAGAACGCGTTGACATTGGTCTTGGTTAA
Protein sequence (LotjaGi6g1v0097200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIMLTLFLLCLMQATCHFFKQPANFAPDFTLSLSELAALDMCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEA CSRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLQGIRIIQAAAGAGRTMLISDSGQVYAF GKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGKLGHHADPSDVEPHPLLGAL EDIPVVQIAAGYCYLLCLACQPTGMSVYSVGCGLGGKLGHGTRTDEKFPRLIEQFQMLNLQPMVVAAGAWHAAVVGKDGR VCTWGWGRYGCLGHGNEDCESVPKVVEALTNVKAVYVATGDYTTFVVSDDGDVYSFGCGESASLGHNAGNDVQGNRHANV LSPQLVTSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVENQTERGNPERVDIGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 17 | 17 | - | – | |
Phobius | 1 | 17 | 17 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
Phobius | 1 | 1 | 1 | - | – | |
Phobius | 2 | 12 | 11 | - | – | |
PANTHER | 12 | 472 | 461 | 2.5E-287 | – | |
PANTHER | 12 | 472 | 461 | 2.5E-287 | – | |
Phobius | 13 | 17 | 5 | - | – | |
Phobius | 18 | 473 | 456 | - | – | |
Gene3D | 77 | 260 | 184 | 2.1E-47 | ||
PRINTS | 86 | 99 | 14 | 4.9E-16 | ||
SUPERFAMILY | 87 | 416 | 330 | 4.51E-71 | ||
Pfam | 102 | 151 | 50 | 1.5E-11 | ||
ProSiteProfiles | 103 | 154 | 52 | 14.705 | ||
PRINTS | 105 | 121 | 17 | 4.9E-16 | ||
Pfam | 154 | 205 | 52 | 2.0E-4 | ||
PRINTS | 155 | 171 | 17 | 4.9E-16 | ||
ProSiteProfiles | 155 | 208 | 54 | 11.268 | ||
PRINTS | 195 | 211 | 17 | 4.9E-16 | ||
ProSiteProfiles | 209 | 261 | 53 | 10.404 | ||
PRINTS | 211 | 225 | 15 | 4.9E-16 | ||
Gene3D | 261 | 472 | 212 | 3.0E-50 | ||
ProSiteProfiles | 265 | 318 | 54 | 10.986 | ||
Pfam | 266 | 315 | 50 | 8.8E-5 | ||
ProSitePatterns | 305 | 315 | 11 | - | ||
PRINTS | 308 | 326 | 19 | 4.9E-16 | ||
Pfam | 318 | 367 | 50 | 2.9E-13 | ||
ProSiteProfiles | 319 | 370 | 52 | 13.539 | ||
PRINTS | 366 | 387 | 22 | 4.9E-16 | ||
Pfam | 370 | 420 | 51 | 1.5E-6 | ||
ProSiteProfiles | 371 | 437 | 67 | 9.881 | ||
ProSiteProfiles | 438 | 473 | 36 | 9.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0097200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…