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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097700 |
| Transcript ID | LotjaGi6g1v0097700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G73400.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400, mitochondrial; TrEMBL-Plants: tr|V7C381|V7C381_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0097700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21203327..21206460) extracted from Lotus japonicus Gifu genome v1.2.
ATTAACTGAGTCCGACATTTGAACATTCGGAGGAGTCCGAATGTATAACAGTCCGAATGTATAACATTCGGACTAAAACA CGGAGGGGTAATATTGGTTTTTCCCCACTTTTAAATGGGGTGGGAATTCTAAACCAGGGGTGGGAAATCTAATTCCCTTG AACACCCATAACTTTTCATTTTCCATTATTCACCCCGGTTGCCGTTCTCGGGTCTGAACATAAGGGCACAAGGTTCCCAA CAATTCATCATCCACCATTACCAACACCACACTAAGCTCCTTCCTCCGTTCCTGACAAAATCAACCTACATCCAGAACTC AAAAGTGCATCTTCTTCGCCTGCCTCTTGTTTGGAACAACGCCTTCAATTCCAAATAGCAAAATGATGTTGATGGGCATG TTTCATAGGTACATAAATTCTCTAAATAACCCTTCATTTTCATCATCCACCCATCATTATTATTGTCTCTTTAGAAATAA AGTTCTGCCACAAATTGAAACCACACTTCAATCATCAAGGTTTTCTGTTTTTCACTACTCCTCTACTTATAGCCAAATAA TACCATTATCATATGCTTCTAGTAATCCCTTGATTCAATCTTCGTTTCCCATGAACTCCTCTGTTGCATATCATTTTTCC ATGCGCTGTTATTGCTCGGAGACTGTCCCCGCGACCACGACCGCGACCACAACCACAGATTTTGGTTCTGGTATGAGTAA TGTTGTTCAGTTAGACAGTGATGTTGATAAGGTGTGTAATACCATGATGGATAACTTACATGGATTTAACAATTTGGAGA AAGCTCTTGACCAATTAGCCATCCCATTGTCCACCCCATTGGTTACGGGGGTGCTGCATAGGCTCCGATATGATGAGAAA ATTGCATTTAGGTTTTTCACATGGGCTGGTAATCAAGAAAATTATTCACATGAGCCTTGTGCTTACAATGATATGATGGA CATTTTGTCGAGCACGAAGTACAAGGTGAAACAGTTTCGGATAGTTTGTGATATGTTGGATTATATGAAGAGGAAGAACA AGAGTACAGTTCCGGTTGAAGTTCTCATGACCATTTTGAGAAAATATACTGAGAAGTATCTAACTCATGTGCAGAAGTTT GCAAAGAAGAAGAGGATAAGAGTGAAGACGCAACCGGAAATAAATGCATTTAACTTGCTGTTGGATGCACTTTGCAAGTG TTGCTTGGTTGAGTATGCTGAAGGGCTATATAAGAAAATGAGAAAGATAATCAACACTAATGCAGAAACATATAATATAT TGGTTTTCGGGTGGTGTAGAGTTAGAAGCCCAACTAGAGGAATGAAATTGCTGGAAGAAATGATTCAACTGGGTCATAGG CCTGACAATTTCACATATAACACAGCCCTTGATACCTACTGCAAAGCAGGAATGATTACAGAGGCAGTGGATCTTTTTGA GTTCATGAGGACAAAAGGTTCAACCATATCATCTCCCACTGCCAAGACTTATGCAATTATGATTGTCACTCTTGCTCAAA ATGATAGAATGGAGGAATGTTTTAAACTTATGGGGTATATGATCAGCAGTGGTTGTCTTCCTGATGTCACAACATACAAG GATATAATTGAAGGAGTGTGTTTGTGTGGAAAGATAGATGAAGCTTACAAGTTCTTGGAAGAGATGGGAAACAAAGGTTA CCCACCTGATATTGTTACTTATAATTGTTTCCTCAGGGTCCTTTGTGACAATAAAAAGTCTGAGGAAGCCCTTAAACTAT ATGGAAGAATGATTGAATTGAGATGTATCCCTAGTGTCCAGACTTACAATATGCTGATCTCAATGTTTTTTGAGATGGAT GATCCTGATGGGGCATTTGAGACTTGGCAGGAAATGGAAAAGAGGGGCTGCAATCTGGACACTGACACATATTGCGTGAT GATCGAGGGGCTATTTAACTGCAATAAAACAGAAGAAGCTTGTTCTCTTTTAGAAGAAGTGATAAACAAGGGAATAAAAT TGCCTTATAAAAAGTTTGATTCCTTTTTGATCCAACTTTCAGATCTTGGTGATCTTCATGCCATTCATAAGCTCTCAGAT CATATGAGGAAATTCTATAATCCTGCCATGGCAAGACGTTATGCTATAAGTCAGAAGCGTAAGAGCATAAGTTTGAGAGA GAGGTAATCCTGAGAAACTTCTCAGTTGAGTTTGTGCTACCTGTTTGGAAAATATGGGGTCACATTTAGCAGGGTCCTTC TCATGATAGTTTAGACAAATATTTTCTGGAAGCATGTTACAATATTCACTATTTTAGATACGTCCTTCAAGCTTTGCCTC TGCACCACATATTGGACTATGATGATGACAACTAGTTGCAGCTTTGTCCATGTCCTAGCAGTCTCTCCAATCTGCTGCCA ATATTTTTGGGTTGAGAAATCTGAACGTCTTTGGGTTCTCCTGTTCTCATATTTAGATCATTAAGAGAAATTGAGTAGTT GGCACAGCCTAAAGGGTGCATGTAAGTTAAGAGGTTGTGAACTTTTTACATGATAGTAAACTTTGTTATCTGGTCGAGAA TCTTAACTACTTCACCTCAAATTAATGCCATTTATGAGATTAATTTAGCATTTTGAAGGCCATAGTGTGATTTTATTTGA ACTATTTAACTGTCTCACTGTTATAACGAATGGACCTTCTCTTCAAATATGTGATCGCATATACGTTCTCCCTACTAAAC CTGTGGCCACAATTTATTTTCCTGTTTGTGTTCCCCTTTTTCTTCTAATGTTTCTTTGGGTTAGGGAGCTTGTTTGTTTT GTTACAGATCTAGTGGTGGACTGGAAGGTTGGAGTTTGATGAACATATCAGACACTGGACTAATATGAGATCATTCTCTT TGACTATTTTCCATATTTCATAAACCATTCCACAAAGATGTTTTCCATAGCTTTAGTCGACAGTTAATGTTTATCCTGGG GGTTTCTATTTTCTTGGCCAGGAAAATATTTTAAGGCAGTCTTAACACATGTTTTTCTTTTCTTATGCAATCAATTTCAA ATCACATGCCTTTCATTTTTTTATGCAATCAATATCTTTATATCTGTGGGCTATTTAGTTTAGGTATTGTTAGTCTATGT CTCACTGTCAAATT
CDS sequence (LotjaGi6g1v0097700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTGATGGGCATGTTTCATAGGTACATAAATTCTCTAAATAACCCTTCATTTTCATCATCCACCCATCATTATTA TTGTCTCTTTAGAAATAAAGTTCTGCCACAAATTGAAACCACACTTCAATCATCAAGGTTTTCTGTTTTTCACTACTCCT CTACTTATAGCCAAATAATACCATTATCATATGCTTCTAGTAATCCCTTGATTCAATCTTCGTTTCCCATGAACTCCTCT GTTGCATATCATTTTTCCATGCGCTGTTATTGCTCGGAGACTGTCCCCGCGACCACGACCGCGACCACAACCACAGATTT TGGTTCTGGTATGAGTAATGTTGTTCAGTTAGACAGTGATGTTGATAAGGTGTGTAATACCATGATGGATAACTTACATG GATTTAACAATTTGGAGAAAGCTCTTGACCAATTAGCCATCCCATTGTCCACCCCATTGGTTACGGGGGTGCTGCATAGG CTCCGATATGATGAGAAAATTGCATTTAGGTTTTTCACATGGGCTGGTAATCAAGAAAATTATTCACATGAGCCTTGTGC TTACAATGATATGATGGACATTTTGTCGAGCACGAAGTACAAGGTGAAACAGTTTCGGATAGTTTGTGATATGTTGGATT ATATGAAGAGGAAGAACAAGAGTACAGTTCCGGTTGAAGTTCTCATGACCATTTTGAGAAAATATACTGAGAAGTATCTA ACTCATGTGCAGAAGTTTGCAAAGAAGAAGAGGATAAGAGTGAAGACGCAACCGGAAATAAATGCATTTAACTTGCTGTT GGATGCACTTTGCAAGTGTTGCTTGGTTGAGTATGCTGAAGGGCTATATAAGAAAATGAGAAAGATAATCAACACTAATG CAGAAACATATAATATATTGGTTTTCGGGTGGTGTAGAGTTAGAAGCCCAACTAGAGGAATGAAATTGCTGGAAGAAATG ATTCAACTGGGTCATAGGCCTGACAATTTCACATATAACACAGCCCTTGATACCTACTGCAAAGCAGGAATGATTACAGA GGCAGTGGATCTTTTTGAGTTCATGAGGACAAAAGGTTCAACCATATCATCTCCCACTGCCAAGACTTATGCAATTATGA TTGTCACTCTTGCTCAAAATGATAGAATGGAGGAATGTTTTAAACTTATGGGGTATATGATCAGCAGTGGTTGTCTTCCT GATGTCACAACATACAAGGATATAATTGAAGGAGTGTGTTTGTGTGGAAAGATAGATGAAGCTTACAAGTTCTTGGAAGA GATGGGAAACAAAGGTTACCCACCTGATATTGTTACTTATAATTGTTTCCTCAGGGTCCTTTGTGACAATAAAAAGTCTG AGGAAGCCCTTAAACTATATGGAAGAATGATTGAATTGAGATGTATCCCTAGTGTCCAGACTTACAATATGCTGATCTCA ATGTTTTTTGAGATGGATGATCCTGATGGGGCATTTGAGACTTGGCAGGAAATGGAAAAGAGGGGCTGCAATCTGGACAC TGACACATATTGCGTGATGATCGAGGGGCTATTTAACTGCAATAAAACAGAAGAAGCTTGTTCTCTTTTAGAAGAAGTGA TAAACAAGGGAATAAAATTGCCTTATAAAAAGTTTGATTCCTTTTTGATCCAACTTTCAGATCTTGGTGATCTTCATGCC ATTCATAAGCTCTCAGATCATATGAGGAAATTCTATAATCCTGCCATGGCAAGACGTTATGCTATAAGTCAGAAGCGTAA GAGCATAAGTTTGAGAGAGAGGTAA
Protein sequence (LotjaGi6g1v0097700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLMGMFHRYINSLNNPSFSSSTHHYYCLFRNKVLPQIETTLQSSRFSVFHYSSTYSQIIPLSYASSNPLIQSSFPMNSS VAYHFSMRCYCSETVPATTTATTTTDFGSGMSNVVQLDSDVDKVCNTMMDNLHGFNNLEKALDQLAIPLSTPLVTGVLHR LRYDEKIAFRFFTWAGNQENYSHEPCAYNDMMDILSSTKYKVKQFRIVCDMLDYMKRKNKSTVPVEVLMTILRKYTEKYL THVQKFAKKKRIRVKTQPEINAFNLLLDALCKCCLVEYAEGLYKKMRKIINTNAETYNILVFGWCRVRSPTRGMKLLEEM IQLGHRPDNFTYNTALDTYCKAGMITEAVDLFEFMRTKGSTISSPTAKTYAIMIVTLAQNDRMEECFKLMGYMISSGCLP DVTTYKDIIEGVCLCGKIDEAYKFLEEMGNKGYPPDIVTYNCFLRVLCDNKKSEEALKLYGRMIELRCIPSVQTYNMLIS MFFEMDDPDGAFETWQEMEKRGCNLDTDTYCVMIEGLFNCNKTEEACSLLEEVINKGIKLPYKKFDSFLIQLSDLGDLHA IHKLSDHMRKFYNPAMARRYAISQKRKSISLRER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 255 | 428 | 174 | 3.4E-66 | – | |
| ProSiteProfiles | 259 | 289 | 31 | 7.892 | ||
| TIGRFAM | 262 | 288 | 27 | 0.0015 | ||
| Pfam | 263 | 288 | 26 | 0.0012 | ||
| ProSiteProfiles | 293 | 327 | 35 | 11.159 | ||
| TIGRFAM | 296 | 328 | 33 | 4.2E-5 | ||
| Pfam | 324 | 356 | 33 | 7.3E-10 | ||
| ProSiteProfiles | 328 | 362 | 35 | 11.794 | ||
| TIGRFAM | 330 | 360 | 31 | 2.0E-7 | ||
| Gene3D | 365 | 452 | 88 | 6.6E-24 | ||
| ProSiteProfiles | 366 | 400 | 35 | 9.81 | ||
| Pfam | 369 | 398 | 30 | 0.0075 | ||
| TIGRFAM | 369 | 402 | 34 | 2.7E-6 | ||
| Pfam | 400 | 449 | 50 | 8.4E-12 | ||
| ProSiteProfiles | 401 | 435 | 35 | 11.915 | ||
| TIGRFAM | 404 | 437 | 34 | 0.0013 | ||
| PANTHER | 404 | 570 | 167 | 3.4E-66 | – | |
| SUPERFAMILY | 415 | 573 | 159 | 4.55E-5 | ||
| ProSiteProfiles | 436 | 470 | 35 | 11.794 | ||
| TIGRFAM | 438 | 471 | 34 | 5.0E-8 | ||
| Gene3D | 453 | 590 | 138 | 6.8E-24 | ||
| Pfam | 470 | 518 | 49 | 3.8E-13 | ||
| ProSiteProfiles | 471 | 505 | 35 | 10.687 | ||
| TIGRFAM | 474 | 506 | 33 | 1.4E-7 | ||
| ProSiteProfiles | 506 | 540 | 35 | 10.315 | ||
| TIGRFAM | 509 | 539 | 31 | 1.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0097700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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