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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0104900 |
| Transcript ID | LotjaGi6g1v0104900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT2G23140.1 RING/U-box superfamily protein with ARM repeat domain-containing protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|A0A072UXZ3|A0A072UXZ3_MEDTR ARM repeat RING/U-box protein; Found in the gene: LotjaGi6g1v0104900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:23107169..23113023) extracted from Lotus japonicus Gifu genome v1.2.
TCATTGTTAAAAGTGCTTGTTAATAGCATATCCTCATTTTTGCATTTATCATTTTCTGGTAATATAAACTTAGAACCAGT CTCTAAGTATTACCAGAAGGCAGAGGATATACTTAAGTTGTTGAAGCCGATCATTGATGCGATTGTTAATTCTGAGTTCG CTTCTGATGAAGTGCTAAGCAAGATGTTTGAAGAACTTGCTCACACTGTTGATGAATTAAAGGAGTATGTTGATAATTGG CACCTATTGTCTAGCAAAGTTTATTTTGTAAGTGCCACAAATTCTTGACTCATAAAAGGCTTATTTATCTTAGTTGTTAA TTTAGTGTATAATGAGTTGAGCCTCCATTATGGGGTGGTTATCCTTTTTGTTTCTTTATGTGCACATTAAATTTTGGGAT AAATATGTTTTCAATATATTGTTTTGTGGTTGGTGAGAAAATCATGCTGTGTTGATGTTTTGTATAGAAGGGTATAGTTA TGATAGCGGTGGTGTATTCTGTTGTTTTCCGTCTTCCTCTTGCTCTCCCCACCTTTCTTCTATCATCCTTTTTCTTCTCC TTCTTGTATATTACTCGATAGTGTTTTACTCCCCAGTTAATCAATGTTTTGCTTTGTGTTTGCTTTGCACCTATATTATA ATTTCAAGTTCATTTGTTTTCTTATAATTAGAAGTTTTACTTTTGGAGAATCAAAGGTTCAGGATCCTAATAATTCGAAA GACATTATGGTGATGGTATTATGTGGTGGTAAATGAGATGTGTTTGTGATGGATGTAATGGCATTGTAGCTTGCTTGTTG CATTCAAACTGCAGCAGTTTCTATTTTCCTAATAAGAATTTTCATTCTATTATTTCATGATTTCATCACCATTCTTTTAG TTTTGCTCATGGTCTTGCATCATCATTTTTGGAAACATAAATATTTGTGTTCTCTTGAAAATGTATAGGTTATCTTTGCA TTTAGCATCTCCAGAAATTAATTTTTTGAGTTGCTACTTACTTGCCGAAACTTAGTCCACTCCTTTGTATAGTTTTCAAA GTGATCATAATTAATTGTCTGTCTCGTTAGATTCGTAAAGTATAACATCCAATTTAACTAAGTGTATTTTCTTTTTCAAA TTTAATTAACAGGTCAAATTCCTTATCTATTACCTTTGTAAAATCTAAGCGTTACAACCTTTATTCAAAATAATCCTTTT CCATTGAATATGGCCTTTTGGTTGCCGTCTTGCTGACAGTTGTTATTATCTTATGTTACTGAGTCTTCGCCATTCAAATA TTTGGGTTCAATTAAGACATTTCTTAATATCCAAAGAAGTTCGTTTGTCATTTTTCGCTTACTTTAGAATGTCTTTGTTT CTTCTCAATCCCTCTATAATCTGTGTGATTGATGGTTGGAATCAGATTTAACTTGTCAAATGCATGAAATTAACCATGTA GATATTGATAGGTTAGTTCTTAGTGATATTTGAACTTATTAAAGAGACGATAATTGTGCAGAACCATTGGATTGCTTCTT GTTTATTCATATAAGAAAAAGTACTTGAGATGTAGAGGTCAATCTAATGGTATAGTAATACTTGAGTTTTTTTACGAATG AAAATGATATCTGTATAGTATTTCATTTTTCCTCATAACACACATCGATATCCAGAGGTCACTCCTTCCTAAAAGATTGC TGTTCCCTTCTGTTGAAAGTTGCAGGGTTAGTGTTTAGGTAGTAGAGAGAAAAAGGAATACTTGAATAATGAAATTATAT TATTGATGTGAAGGATGATGTTGGATGTTGTTAAAGAAACAAAGTACTAAACCTTATTCATAAATCATACTAAGACTAGG CTCTTTATCCTAACTAAACAAGGCAATAAATAATGAAATTAAGGAAAAATGTAAAGTAATTCTAAGTGATAATCTAAGAT CATATTTTATGATAGAATAATGATCTGGGGAGACACTTTTTAGATATTTCAACACCCAAAACCGCCCCGCCCCCCCCACC ACAAAAAAATACTTAAAGCTAAAGTTTACTAATCTTTAAGCTTTTACAAATGAAACCTTTGTGAAAGAAAAATAACCCAA CAATATTAATTGAGATTTGAGACTGATCGAGCCATATTGCATCGGTTGTGAGGATATAGGTCAGAATTTGAAGCCAGACT AGACTGCATGTAGGACAAAGTTTGAGGCCAGACTGCGTCTGAGACATCAGTTGGGAGGATCAAATTGCGACTAGGACAAA TATCGAGGCCAAACTTCAATTAGGATGAAAATTTGGGCCAAATCTCAACTGGGACAAAAATTAGTACTAAACTGTAACTA GTATAATAGTCGAACTCAGAATGCATATGGAATAGATGGGGCTAGATTGCCTGTGGGATATTCAGGGCCAGATTGCTTCT AGGATATGGGACAAAAGCCGAGGGCTGTAAAGGCTGTGGAGATGGTTGGGAGGAGGACATGGCAATGGGATGCATTGATC TAAGGATCAAGAGAAGTTGGGGAGCAGAAAGGTCCGCTGATAATGAGAGAAGATGAGAGGAAAAGGTGGCCGGAATTTGT GCACGCCCAATGCAAAGATTTATGGAGGTAGTGACATTATTAGCATGGAGTTCCGAATTTTAGGGAGCTTGATTGAAAAA GAGACAAGGCATGTGGAGGATGGTATCGCTTTGATATCATTTTGAAAGTTATAAGATTAGTCTTGGTAGTGTCATTATTA CTGTATAGTTTTGGATTTTAGGGAACTTGATAGCAAAAGAGTGATGGGGCATGTCATGGGGGATGGTATCGCTTTGATAT TATGCTGAAAGTTATAGAATTAGTGCATGTTTGGATACATGGTAGGAAACCACAGTGAAGTCAAAATCATGGTGGGCAGC CACAAAAACTAAGGGAAAATGCACCGTGTTTACCATGATTTTGGCTCACCATGGTTTTCCACCGTGTTTCCAAAAAATGC ACTCAGTCTTTTAGGTATAGAAGGAGGAAAATGTACTTTGATATTGATGTGAAAATGTATGATGTTGGATGTTAATAGAG ATGACAAAGCACTAATCCTTATTTTTCCTAATTAAATACGGGAACATTAATGAAATAAAGAAAGATGGATGCGAATTATA AAAGATAATTAAGATCCATATTTTATGATAGAATTATATGCACTATATTCTTTCAATATTCTAACACCTTTGTCTACAAC TTTGTGAGATGTGATTTGCTTAAAAGTGAGCGGTGTTCTTATGTTTTTGCTTGAGTTGGGTTTCTACCTGGTGTAGAAGT AGAATGCCCTTCAAAACTCTATCTTGTTGCCGAATATAACATGTACTTGTTCCTTTTGTTGTGGCCTCATCTTTTGGAGT TTCATGGTGTGATTCTTGCACATTAAATGTGTGCGGAGTTCTCACTACGGCTTTCTTGATCAATAGGTTATGCAAGTTGA ACCCTTATTATCTAGGACCTGCACTTCAGGGCTTAATATTTTACAGTGGCTGAAGGCTTCTCAGCTATGTTCTCATGGTG AATTGAGTTCTGAACATTTAGAGGTAAATATTCTATTAATCAAATTGTTAATGCAAGATTTCTGATTCAATTGGATTTCA CTATTGGGAAGAAACTTAGGATGTATGATATCAATTTCAAATTGCAGCACTGTGTTCAGAAATTTAAGCTTTTGGGTCAT GAAGAAACCTCATCAGTCATTAAGGAAGCTATTGCGGAACAACTGGACGGTGTGGGGCCCAGTTCGGAGATCCTGGCACA AATTGCTGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATG CTGAACAAACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATGATTGCTATTGTAACACGTTTGCATGAGCGTCTT GTTATGCTCAAGCAAGACCAGAGTTGCAGCCCAGTTCCTGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAATTGAT GACTGATCCGGTGATTGTGGCCTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGCTCTTGGCCTTACTG TTTGTCCAAAGACACATCAGACCCTGGCTCACACGAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGG TGCGAGTCAAACAATGTGAAATTGGTTGATCCCACAAAGTCCACGAATTTGAATCAACCATCTATCCCTCATGGGTATAT GGAGTCTGGTACAACCAGAGAATCTCCTGTTTTACCTCATTCCAGGAACAACCAACCATCCTCACCTGAGTCAGCTCGTT CTCGTTCTTTTAGTTCACCAGGTAATAACTTGACTTCTTCTGGTGGAATCCACAGAGAGGGAACATCACCTGTGCATCCC CGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGTAAACGGTCTTGCAAGAATATCACTTGTAGGTTCAGATGACAGGTC TGCTTGCTCAGATGAAAGCAGCATCGATTCAGTCGTTCAATCATCAATGTCACCATCTAGAATTGAATCGGCCACTGCCT TTAGCTCTGAACAATCTCAAACCCATGTTAGAGCTGTATCGGACTCCAGTGCTTTTTCTGGTGCAAATTTTCCTCAAGAA ACACAAGGTGATGACAACAATGCCTCTCAGCTGTCAACGAGTCCTGGCTACAGCAGAGAAACTTCCGGTGAATTAAGTCC AGGGCCAGATGCTTCTACTGTTGCTGCCATGCCATCAGTGCATAGAGAACCTGAATTTCCACCCCGATTGATGGAGACAA GGTCTCGAAGCCAAGCTATTTGGAGGAGGCCATCAGAAAGACTTGGGCCTAGGATAATATCTTCTTCTGCCATTGAAACA AGAGCTGATCTTTCTGGAATTGAAGCCCAGGTTCGGGGTTTAGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAG AGAGGCAACAGTAGAAATCCGCCTTCTTGCAAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTA GCTTATTAGTTGAGTTACTTAAATCCACTGATACAAGAATCCAGGAAAACGCTGTTACTGCACTTCTCAACTTATCAATT AATGACAACAACAAAGCTGCTATTGCAAATGCTGGAGCAATTGAACCCCTGATTCATGTGCTTGAGACTGGGAGCCCAGA AGCCAAAGAAAATTCTGCTGCTACTCTTTTCAGCTTGTCAGTGATTGAGGAAAATAAGATTAACATTGGGAGGTCTGGGG CAATTGGACCACTAGTTGATTTATTAGGAAACGGAACCCCAAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTG TCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGCTAATGGAGCCGGCAGC TGGAATGGTTGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATTCCGGAAGGAAGAAATGCAATTGGGCAGGAAG GTGGGATACCCGTTCTTGTCGAGGTTGTCGAGTTGGGTTCAGCAAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACAT CTTTGCTTACACAGTAACCGATTTTTAAGCACGGTGCTCCAACAAGGAGCTGTTCCACCATTAGTAGCCTTATCACAGTC AGGCACCCCAAGGGCCAAAGAGAAGGTGCGGTTTTTTCTGTATGGTCCCATATTTTAGTTACATTTAATTCCATTTCTAT TCTTACAAAGATGATGAATTTTGTTCTATGTTTAGGCCCAGGCTCTCCTTAATCAATTTAGAAGCCAAAGACACGGGAAT TCTGGAAGGGGCTGA
CDS sequence (LotjaGi6g1v0104900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGAAGAACTTGCTCACACTGTTGATGAATTAAAGGAGTATGTTGATAATTGGCACCTATTGTCTAGCAAAGTTTA TTTTGTTATGCAAGTTGAACCCTTATTATCTAGGACCTGCACTTCAGGGCTTAATATTTTACAGTGGCTGAAGGCTTCTC AGCTATGTTCTCATGGTGAATTGAGTTCTGAACATTTAGAGCACTGTGTTCAGAAATTTAAGCTTTTGGGTCATGAAGAA ACCTCATCAGTCATTAAGGAAGCTATTGCGGAACAACTGGACGGTGTGGGGCCCAGTTCGGAGATCCTGGCACAAATTGC TGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAAC AAACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATGATTGCTATTGTAACACGTTTGCATGAGCGTCTTGTTATG CTCAAGCAAGACCAGAGTTGCAGCCCAGTTCCTGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAATTGATGACTGA TCCGGTGATTGTGGCCTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGCTCTTGGCCTTACTGTTTGTC CAAAGACACATCAGACCCTGGCTCACACGAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGCGAG TCAAACAATGTGAAATTGGTTGATCCCACAAAGTCCACGAATTTGAATCAACCATCTATCCCTCATGGGTATATGGAGTC TGGTACAACCAGAGAATCTCCTGTTTTACCTCATTCCAGGAACAACCAACCATCCTCACCTGAGTCAGCTCGTTCTCGTT CTTTTAGTTCACCAGGTAATAACTTGACTTCTTCTGGTGGAATCCACAGAGAGGGAACATCACCTGTGCATCCCCGTTCA ACTTCAGAAGGTTCCTTAAGTGGCATGGTAAACGGTCTTGCAAGAATATCACTTGTAGGTTCAGATGACAGGTCTGCTTG CTCAGATGAAAGCAGCATCGATTCAGTCGTTCAATCATCAATGTCACCATCTAGAATTGAATCGGCCACTGCCTTTAGCT CTGAACAATCTCAAACCCATGTTAGAGCTGTATCGGACTCCAGTGCTTTTTCTGGTGCAAATTTTCCTCAAGAAACACAA GGTGATGACAACAATGCCTCTCAGCTGTCAACGAGTCCTGGCTACAGCAGAGAAACTTCCGGTGAATTAAGTCCAGGGCC AGATGCTTCTACTGTTGCTGCCATGCCATCAGTGCATAGAGAACCTGAATTTCCACCCCGATTGATGGAGACAAGGTCTC GAAGCCAAGCTATTTGGAGGAGGCCATCAGAAAGACTTGGGCCTAGGATAATATCTTCTTCTGCCATTGAAACAAGAGCT GATCTTTCTGGAATTGAAGCCCAGGTTCGGGGTTTAGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAGAGAGGC AACAGTAGAAATCCGCCTTCTTGCAAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAGCTTAT TAGTTGAGTTACTTAAATCCACTGATACAAGAATCCAGGAAAACGCTGTTACTGCACTTCTCAACTTATCAATTAATGAC AACAACAAAGCTGCTATTGCAAATGCTGGAGCAATTGAACCCCTGATTCATGTGCTTGAGACTGGGAGCCCAGAAGCCAA AGAAAATTCTGCTGCTACTCTTTTCAGCTTGTCAGTGATTGAGGAAAATAAGATTAACATTGGGAGGTCTGGGGCAATTG GACCACTAGTTGATTTATTAGGAAACGGAACCCCAAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATA TTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGCTAATGGAGCCGGCAGCTGGAAT GGTTGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATTCCGGAAGGAAGAAATGCAATTGGGCAGGAAGGTGGGA TACCCGTTCTTGTCGAGGTTGTCGAGTTGGGTTCAGCAAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGC TTACACAGTAACCGATTTTTAAGCACGGTGCTCCAACAAGGAGCTGTTCCACCATTAGTAGCCTTATCACAGTCAGGCAC CCCAAGGGCCAAAGAGAAGGCCCAGGCTCTCCTTAATCAATTTAGAAGCCAAAGACACGGGAATTCTGGAAGGGGCTGA
Protein sequence (LotjaGi6g1v0104900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFEELAHTVDELKEYVDNWHLLSSKVYFVMQVEPLLSRTCTSGLNILQWLKASQLCSHGELSSEHLEHCVQKFKLLGHEE TSSVIKEAIAEQLDGVGPSSEILAQIADSLGLRSNQEVLIEAVALEKLKENAEQTEKTAEAEYIDQMIAIVTRLHERLVM LKQDQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIALGLTVCPKTHQTLAHTNLIPNYTVKALIANWCE SNNVKLVDPTKSTNLNQPSIPHGYMESGTTRESPVLPHSRNNQPSSPESARSRSFSSPGNNLTSSGGIHREGTSPVHPRS TSEGSLSGMVNGLARISLVGSDDRSACSDESSIDSVVQSSMSPSRIESATAFSSEQSQTHVRAVSDSSAFSGANFPQETQ GDDNNASQLSTSPGYSRETSGELSPGPDASTVAAMPSVHREPEFPPRLMETRSRSQAIWRRPSERLGPRIISSSAIETRA DLSGIEAQVRGLVEGLRSSDLDTQREATVEIRLLAKHNMDNRIAIANCGAISLLVELLKSTDTRIQENAVTALLNLSIND NNKAAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKINIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI FHENKNRIVQAGAVRHLVELMEPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLC LHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 770 | 769 | 1.8E-286 | – | |
| PANTHER | 2 | 770 | 769 | 1.8E-286 | – | |
| Coils | 115 | 145 | 31 | - | – | |
| Gene3D | 157 | 251 | 95 | 2.1E-25 | ||
| SUPERFAMILY | 161 | 249 | 89 | 8.07E-28 | – | |
| ProSiteProfiles | 171 | 245 | 75 | 40.241 | ||
| Pfam | 172 | 242 | 71 | 1.0E-20 | ||
| SMART | 175 | 238 | 64 | 8.6E-31 | ||
| CDD | 176 | 218 | 43 | 9.6212E-23 | – | |
| MobiDBLite | 248 | 328 | 81 | - | – | |
| MobiDBLite | 341 | 455 | 115 | - | – | |
| MobiDBLite | 344 | 426 | 83 | - | – | |
| SMART | 472 | 516 | 45 | 280.0 | ||
| Gene3D | 488 | 609 | 122 | 2.5E-26 | ||
| SUPERFAMILY | 489 | 761 | 273 | 1.19E-48 | ||
| SMART | 518 | 558 | 41 | 7.2E-8 | ||
| Pfam | 520 | 557 | 38 | 6.9E-11 | ||
| ProSiteProfiles | 529 | 571 | 43 | 14.857 | ||
| SMART | 559 | 599 | 41 | 0.0025 | ||
| Pfam | 559 | 598 | 40 | 5.3E-6 | ||
| SMART | 600 | 640 | 41 | 0.25 | ||
| Pfam | 602 | 639 | 38 | 3.6E-6 | ||
| Gene3D | 610 | 769 | 160 | 1.1E-29 | ||
| ProSiteProfiles | 611 | 653 | 43 | 10.272 | ||
| SMART | 641 | 680 | 40 | 0.0046 | ||
| ProSiteProfiles | 652 | 693 | 42 | 10.657 | ||
| SMART | 681 | 721 | 41 | 6.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0104900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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