Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0105100 |
| Transcript ID | LotjaGi6g1v0105100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K9Q6|G7K9Q6_MEDTR Disease resistance protein; Found in the gene: LotjaGi6g1v0105100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:23132913..23136185) extracted from Lotus japonicus Gifu genome v1.2.
ATCATAATCATTTTGAAACATAATAACAAGCAGTGTAATTACACCAGTTCTCTACAATTGCAATTTTAGTTGACTTTAGA GACCCTGTACTTCATATTCCACACCCATACATGGCTGTGCCACTATCATCATCATCATCATCATCATCATCTTCCTCTAC TTTATTCACCTATGATGTGTTCATAAGCTTCAGAGGCTATGATACTCGTCATGGTTTCACTGGTAATCTCTACAAAGCTC TTTGTGACAAGGGAATCCGCACCTTCTTTGATGATAAAGAGCTGGAGAGAGGGGAAGAAATCACACCAGTACTTGTCAAA GCCATTGCTGAGTCCAGGATTGCTATCCCTGTATTCTCAGCAAGCTATGCTTCTACTTCCTTTGGCTTGGACGAACTTGT CACCATCATTGACCGCATTAAGAACCAAGGTCGGTTGGTCTTGCCTGTCTTTTATGATGTTGATCCTTCTAAGGTGAGAC ATCAAACTGGGAGTTACAAAGAAGATCTGGATAAGCATCAGGTGAAGTTTGAACAGAATAAGGAAAAGTTCACGGATAAC ATGGAGAGGTTGAAGAAATGGAAGACAGCTCTTAGCCAAGCAGCCAACTTGTCCGGCTATCATTTCAATCTTGGGTACCC AACTTTATTTACCTTCTTATATTTTGTCTGTTATATATATATCTTATAACAGTAGTAAATTTTCCCCAGTTGTCCTATTC CATATTCTAGTACCTTCCAAGGTGGACTTTGATGAAATAAATATATACATAGTGATTATTTTCAAACTCATAATGAATCA TAAGATTATGTGGGTTTCAAGGGAAACTATTAGGTTTTCTATTCAACTCATCTTATAAATCCATATACCCCAACCAATGG AAGTACTAACCAAAAAAATCTAATAGTAGAATAATTTAGAGTGAAGAAATGCTTATTTATCTTGAACAAGTTATTTCATT GAATGGCACACACTTTGCATTAATGGATATTCTGCATTTAGTATCACTTCACATAAACTTCTCTGTTTTTGCAGGGATGG ATATGAATATGAGTTTATTGGAAATATAGTTAAAGAAGTCTCCAATAAGATCAATCGTGTTCCCTTATTTGTTGCAAAAT TTCCCGTTGGATTAGATTCTAAAGTGCTAGAAGTAATATCTCTTCTAGATGTTGCATCCGATGATGGGGTTTGCTTGGTA GGGGTTTACGGATTTGGAGGAGTTGGGAAAATAACACTTGCACGAGCAGTTTACAATTCCATTTTTGACAACTTTGAATG TTTATGTTTTCTTCATAATGTGAGAGAAAATTCAAGCAAATTGGAGCGTCTCCAAGAGAAGCTTCTTTCTAAGACAGTTG AACTTGCAATTGACATAGGAGATGTCAATGAAGGAATTCCAATAATAAAACAAAGGTTACAACGAAAGAAAGTTCTTTTG GTTCTTGATGATGTTGACCAATTGAAGCAGTTGCAGGCTATGGTTGGAGGAATTGATTGGTTCGGTCCAGGCAGCAGAGT TATCATTACCACACGAGACAAAAATTTGCTAACAATCCATGAGATTGAAAGAACATATGAAGTAAATGTATTAAATGAGA AAGAAGCTCTTGATTTGTTGACCTTGAATGCTTTCAAAAAGAACAAAGTTGATTCAAGTTACAAGGACGTTATAAATCGT GCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACTTGTTTGGAAAAAATATAGCAGCATG GAATAATACATTAAGTCGGTATGAAAGGATTCCGGATAAAGATATCCAACAGATACTAAAAGTGAACTTTGATGCTTTGG AGGAGGAAGAAAAGAATGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGCATCCATTGGTTGAGGTTGAACATATACTC CATGCTCATCATGGTGAGTGTATGAAACCTCACATTGGAATATTGGTTGAAAAGTCTCTTGTAAAGATCAGTTCGAATGA TGAAGTAACATTACATGACCTGATTGAAGACATGGGTAAAGAAATTGTTCGAATAGAATCAACAAAAGAGCCTGAGAAGC GTAGTAGGTTATGGAGCCATGAAGATATACTTCAAGTTTTAGAGGATGAAACGGTAAATGGTTTGGTTTTTCATCTTTAA ACTTGATTTATTGTTTTAGGCCATTATATGCTCTAGTTAGTAGTTATAATTGTTTATTACCCTTAATAATAAGTGAAATT TTCTGTATATGCACGTTTAAGTCTTACATGTACTGTGCTTTATTTGTACATTGTGTTAAAAGGGAACCAGAGATATTGAA ATCATCTGCCTGGATTTTTCCTTGACGAGCGAAGAAGAAATAGAATGGAATGGAAAGGGCTTCGAGAATATGAAAAATCT CAGAACACTTATTATTAGAAATGCTCATTTTTCTAAAGCTCCCGAACATCTTCCAAATAGTTTCAGGGTATTGGAATGCG AAAGATATCCTTCAAAGTATTTACCATCTAACTTTCATGCGAAGAAACTTGCCATATGTAAGTTACCCAGATATTGCTTT GTTTTATCCAACTTGGCTGGGTTATTGAAGACAGCACCAAGGCAAGTGTAATGTGTTGATTTATCCAATCTTGTATCTTG ATATATAAATTTTCTTTAAAGTTATTAATTTGGTTTTTTTGTTTTATATCTTTGTTTCTACATTTTATGTGTTGCAGAAG CCCGTGAATTTGAAAGTTTAGAAGAACTTGGCAGAGATACTTGATGTATTTGGTCTGTCAAATTTAGAAGAATTTTCTGT TATGGTCTCAGATCACTCAAACTTGGTTGGTGAAGTAGTTCCTTTTCCCTGTGTTATGATTCAACTTGAAGGATAATTCT ATGGTGAGTTGAAGTTATCTCCATGTTCTTTTTCACCATAAAATGCAAATGGAGGTTCACGCAATGAGCTGCAAGTTGAT GCTATATACTGAGCTATGTGGTTGTATAGCTCCAGTTACGATAACTGATTCAAACTCTGTAAGAGTACGCTGGGCTTGTA ACATTTATAGTGATAGAAGGAAACACCTTTGTTGATATTCTCTCATTTGTTATGAAATGGTTGGACAACTCTGGTTTATT CGAGTTACATTTGCAGATGATGCTATTAATGTTATCCTTATTTGTTATTGTAATTTGTTGGCTTCTCAGATTAGTTGCAT ATGTTTCTAAATGTTATGTTTCCCATTCTCTTTTTTAATCTAGTTTAGTTGCTTTTGCTTTGTTATCCTGATA
CDS sequence (LotjaGi6g1v0105100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGCCACTATCATCATCATCATCATCATCATCATCTTCCTCTACTTTATTCACCTATGATGTGTTCATAAGCTT CAGAGGCTATGATACTCGTCATGGTTTCACTGGTAATCTCTACAAAGCTCTTTGTGACAAGGGAATCCGCACCTTCTTTG ATGATAAAGAGCTGGAGAGAGGGGAAGAAATCACACCAGTACTTGTCAAAGCCATTGCTGAGTCCAGGATTGCTATCCCT GTATTCTCAGCAAGCTATGCTTCTACTTCCTTTGGCTTGGACGAACTTGTCACCATCATTGACCGCATTAAGAACCAAGG TCGGTTGGTCTTGCCTGTCTTTTATGATGTTGATCCTTCTAAGGTGAGACATCAAACTGGGAGTTACAAAGAAGATCTGG ATAAGCATCAGGTGAAGTTTGAACAGAATAAGGAAAAGTTCACGGATAACATGGAGAGGTTGAAGAAATGGAAGACAGCT CTTAGCCAAGCAGCCAACTTGTCCGGCTATCATTTCAATCTTGGGGATGGATATGAATATGAGTTTATTGGAAATATAGT TAAAGAAGTCTCCAATAAGATCAATCGTGTTCCCTTATTTGTTGCAAAATTTCCCGTTGGATTAGATTCTAAAGTGCTAG AAGTAATATCTCTTCTAGATGTTGCATCCGATGATGGGGTTTGCTTGGTAGGGGTTTACGGATTTGGAGGAGTTGGGAAA ATAACACTTGCACGAGCAGTTTACAATTCCATTTTTGACAACTTTGAATGTTTATGTTTTCTTCATAATGTGAGAGAAAA TTCAAGCAAATTGGAGCGTCTCCAAGAGAAGCTTCTTTCTAAGACAGTTGAACTTGCAATTGACATAGGAGATGTCAATG AAGGAATTCCAATAATAAAACAAAGGTTACAACGAAAGAAAGTTCTTTTGGTTCTTGATGATGTTGACCAATTGAAGCAG TTGCAGGCTATGGTTGGAGGAATTGATTGGTTCGGTCCAGGCAGCAGAGTTATCATTACCACACGAGACAAAAATTTGCT AACAATCCATGAGATTGAAAGAACATATGAAGTAAATGTATTAAATGAGAAAGAAGCTCTTGATTTGTTGACCTTGAATG CTTTCAAAAAGAACAAAGTTGATTCAAGTTACAAGGACGTTATAAATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTG GCTTTGGAAGTAATTGGTTCCAACTTGTTTGGAAAAAATATAGCAGCATGGAATAATACATTAAGTCGGTATGAAAGGAT TCCGGATAAAGATATCCAACAGATACTAAAAGTGAACTTTGATGCTTTGGAGGAGGAAGAAAAGAATGTTTTTCTTGACA TTGCTTGTTGTTTCAAAGGGCATCCATTGGTTGAGGTTGAACATATACTCCATGCTCATCATGGTGAGTGTATGAAACCT CACATTGGAATATTGGTTGAAAAGTCTCTTGTAAAGATCAGTTCGAATGATGAAGTAACATTACATGACCTGATTGAAGA CATGGGTAAAGAAATTGTTCGAATAGAATCAACAAAAGAGCCTGAGAAGCGTAGTAGGTTATGGAGCCATGAAGATATAC TTCAAGTTTTAGAGGATGAAACGGGAACCAGAGATATTGAAATCATCTGCCTGGATTTTTCCTTGACGAGCGAAGAAGAA ATAGAATGGAATGGAAAGGGCTTCGAGAATATGAAAAATCTCAGAACACTTATTATTAGAAATGCTCATTTTTCTAAAGC TCCCGAACATCTTCCAAATAGTTTCAGGGTATTGGAATGCGAAAGATATCCTTCAAAGTATTTACCATCTAACTTTCATG CGAAGAAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTTATCCAACTTGGCTGGGTTATTGAAGACAGCACCA AGAAGCCCGTGA
Protein sequence (LotjaGi6g1v0105100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVPLSSSSSSSSSSSTLFTYDVFISFRGYDTRHGFTGNLYKALCDKGIRTFFDDKELERGEEITPVLVKAIAESRIAIP VFSASYASTSFGLDELVTIIDRIKNQGRLVLPVFYDVDPSKVRHQTGSYKEDLDKHQVKFEQNKEKFTDNMERLKKWKTA LSQAANLSGYHFNLGDGYEYEFIGNIVKEVSNKINRVPLFVAKFPVGLDSKVLEVISLLDVASDDGVCLVGVYGFGGVGK ITLARAVYNSIFDNFECLCFLHNVRENSSKLERLQEKLLSKTVELAIDIGDVNEGIPIIKQRLQRKKVLLVLDDVDQLKQ LQAMVGGIDWFGPGSRVIITTRDKNLLTIHEIERTYEVNVLNEKEALDLLTLNAFKKNKVDSSYKDVINRAVTYASGLPL ALEVIGSNLFGKNIAAWNNTLSRYERIPDKDIQQILKVNFDALEEEEKNVFLDIACCFKGHPLVEVEHILHAHHGECMKP HIGILVEKSLVKISSNDEVTLHDLIEDMGKEIVRIESTKEPEKRSRLWSHEDILQVLEDETGTRDIEIICLDFSLTSEEE IEWNGKGFENMKNLRTLIIRNAHFSKAPEHLPNSFRVLECERYPSKYLPSNFHAKKLAICKLPRYCFVLSNLAGLLKTAP RSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 10 | 170 | 161 | 3.4E-39 | ||
| Gene3D | 13 | 196 | 184 | 7.1E-62 | ||
| PANTHER | 18 | 633 | 616 | 9.3E-259 | – | |
| PANTHER | 18 | 633 | 616 | 9.3E-259 | – | |
| ProSiteProfiles | 19 | 167 | 149 | 26.857 | ||
| SMART | 20 | 167 | 148 | 4.3E-39 | ||
| Pfam | 21 | 195 | 175 | 1.3E-36 | ||
| SUPERFAMILY | 192 | 454 | 263 | 8.24E-61 | ||
| Gene3D | 197 | 356 | 160 | 1.2E-27 | – | |
| Pfam | 211 | 422 | 212 | 3.0E-27 | ||
| PRINTS | 229 | 244 | 16 | 2.8E-20 | – | |
| PRINTS | 302 | 316 | 15 | 2.8E-20 | – | |
| PRINTS | 395 | 409 | 15 | 2.8E-20 | – | |
| SUPERFAMILY | 431 | 538 | 108 | 1.8E-26 | ||
| PRINTS | 569 | 585 | 17 | 2.8E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi6g1v0105100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…