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LotjaGi6g1v0129400.2

Overview

Field Value
Gene ID LotjaGi6g1v0129400
Transcript ID LotjaGi6g1v0129400.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P84227|H32_BOVIN Histone H3.2; TrEMBL-Plants: tr|M7ZPB4|M7ZPB4_TRIUA Histone H3; Found in the gene: LotjaGi6g1v0129400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:34036000..34043369) extracted from Lotus japonicus Gifu genome v1.2.

GTCAGTCGTCCCGAACACTCTATCGCCATGGCCCGTACCAAGCAGACCGCTAGGAAGTCGACCGGAGGAAAGGCGCCTCG CAAGCAGCTTGCGACCAAGGCCGCCCGTAAATCGGCCCCTGCCACCGGAGGAGTCAAGAAGCCCCATCGTTACCGCCCCG GTACCGTCGCTCTTCGTGAGATCAGGCGTTACCAGAAGAGCACTGAGCTCCTTATTCGCAAGCTGCCTTTCCAGCGCTTG GTGAGGGAGATCGCCAAGACTTCAAAACCGATCTTCGATTCCAGTCCAGCGCCGTCATGGCCCTCCAGGAGGCCTCTGAG GCTTACCTCGTTGGTCTGTTTGAGGACACCAACTTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAGGACAT CCAGCTCGCCCGCCGTATCCGCGGAGAGCGCGCTTAAGTGCCCTACCTGTTCTCCTCTCGGGAGAGCAAAACAAATCAGC CCTTTTCAGGGCTAAAACATGTTTTCCGTAAGGATAAACTTCAGCAAAGACTTACCTACTTACCTCTCTACACTACCCGC ACGCTCTCGTCCGATTGACGTAGTTGACACGATGAATAAATATACCCCGATACGTACTCGCCCCCCCCCCCCCCCCCCCT GAATCACGTTCTGCATCGCGCGCTCCTCCCCGGAGAGCCGCCTTGCCCGTACTGGTAGGCAGCCCGCTCGGCACGAGTGA CGAGCGGGTAACCTACCCTCTCCATGACAGGCGCTCGCGGGGTGGGTCGCTCGCGAGCAAAGTCGTGGAGAACGGCTTAT CGAGCTTATGATTCGTTTACTGGTGTATGGGAAAGGGGTAATTGCGTCTTTGTTGAAAGCTGCCCTCTCGGGAGACTTTT GTTAGCCTTGAAAAAGGCTGTTTTGCGGCGCCGGAAGGCGCTGCGTGTTAAGGCTAGCTGGAGAGAAAGGAGTGAAGGCT CTTCACTTCTTCTTGGGTGCAGCCTTGGGCTTGGCAGCAGCCTTTTTAGGCTTGGGGCCTTAGGCTTCTTCGCTGCTGGC GCCTTGGTGGCCTTCTTGGCCTTGGAAGGAGACTTGACCTTCTTAGGGGCGGCGGCCGCCTTGGGCTTCTTCTCGGCGAC GGCCTTCTTGGCTGCGACGGGCTTCTTGGCGGCAGCGGTCTTCTTGGCGGCGGCGGGCTTCTTGGCAGGGGCGGCCTTAG GTTGGCAGCAGCCTTAGGCTTGCGGCGGCAGCAGCCTTGGGCTTGGCGGCGACCTTCTCCACCTTCTCCTTGGAGGCGAG CTTGAAGGAGCCGGAGGCACCCTTGCCCTTGGTCTGGACGAGTGCGCCGCTGGCGACGGCGCCCTTGATGTACTTCTTGA TGAACGGGGAGAGCTTCTCCGCGTCCGTCTTGTAGTTGGCGGTGATGTACTTCTTAATGGCCTGCAGGCTGGAGCCTCCC CTCTCCTTCAGGCTCTTGATGGCCGAGTTGACCATCTCGGCGGTCTTGGGGTGCGCGGGCTTGGCACGGGGCTTCTTGGA GGCGGCCGCGCTCTTCGCGGCTTCTTTCGGGCTGGACGCCACGACGGCTGTAGCTTCGGCTTCAGACATGGTGAGAGAAC ACGACGGAGTTGACGACGAACAACGAGCACGATGCTGACGACAGGGATGGCGCGTCGGGCCCCCAGGACACTCACTATAC TACACGACCTGATCGACCGCGCAGACGGCGAAGACCTGCCGCCGCGACTCTCCCCGCGAGCCGCCGTCGACGTGCTCGCG CTCCCTTTCCGACCGACTTTTCACCTGAAAGGACGGGCCGCCCCGACCCGTCACACATACCACGGATAGCCGAGAGTGCG GGCTACGTGGCCGTGACGTCGCCGGTCGCAGCGCACGCCGCGCTCTATGCGAAAAGGGGCGCGCAAAACAGGGGACCACT CCCTGAGCCCGACCTCGGTCGCGTATTTTCTGCATTTACGCCCGTTCCCCGGCGCGCGGCGCCCGGGGGACGCCACGGGG GCGTAGCGACAACCTTTGCGAACACCCATGCCGATTCGCAAGTCGCTACGCCACACGGCAGACGTTATGAGTGCGATCAT AGGAGAGCCTGCATCAAACAAACTTGGCGCCCTCCGACAGACTCGTCGCTCTCGGAGCAGCGCGATTTCCTTCACGCCTT GAACCCCCAGGGTGAACGTTGAACGGGAAGTGGGCGACCGACGTACAACCGAATGCACGAACTGCCGCGTGCATTCGCCG ACGGTGGGAATCGAAGCTGGCGATTCGCACGGAGGGAAACAGCCTCCGCCCATCTTACGCGCATTCCACGAGNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCGCCACTCGCCCGAGGCACACGCCCCACCAGCAGACACAATAATGGGAGAGGTTAGGTTGGCAAAGTG TTGAAAACGCCACCAAGTTGGAAAATCGGGCATAGGTTACCCGTCGGGCCCGAGGGACGACCTCCGGACAAGCACGTCTA CCACCAGAACGGTGGCCGTGCGAGCCGGGTACCAGAGTTTCTCAAGGTGTGGTAAGTATAAAGAGATAGGGGAAGAAGTG GGGGGGAGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTCCAAAACGCTAAATTTTTTGAAATTTGGGCAGGG GTTCCCCGTCGGGCCCGAAGGACGACCTCCAGCTGGCACTTTTCGTGCCAGCCAGGTACCAAAATGTGTCACTGTGAGTA GTAGTAATAACATAGAGAGAGAAAGGGGGGGGGGGGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTCCAA ACGACAAAAAAAATGAAAATTTGGGCAGAGGTTCCCCGTCGGGCCCGAAGGACGACCTCCAGCAAGCAACAATCCACCAG AACGGCGACGTGCGAGCCAGGTACCAAGTTGAAATGACCAAAAGTGTAAGAAATATCTCCTCGCATTGCCACCATATACA CACGAATCTCCTCGGATAGAGCACACCACCATACACACTCATCGGATTCACGGCACTACAAACGCACACGCACACGCACG CACACACACACAACTTTAGGTAAACTGGAGTTGCGACTGTAGGCGAGGTGGATATACTGTATTTCAAGTGCAGGTTTCCT TCCCCCACCGGTTTTCCGCGAAAAACCACTGCAGCCAGCCAGCCGGGCGGCGGCGCTGCTCTCACCCTTCCATTCCAGAA ATCGCACGGCCGTCGACGGGCCGCGCCGGACCCTCCCCTTCGCTCGCCTCTCCACTTCTAGGAACTGTCACCGGCGCTCC GCGACCCCCCCTTTCGACTGCTGGTCATCTCACGAACCTCGCCGCCCTCACTGGCGTGGCTACTCCGTGTCTACAGTGAT ACCCCCTGCAAGTCCTAACCTCACTTCAACAGGGTCTTCTTTCTTCACCCTTCCGCAGACCGAACCAACGGGTTTCCCGC CCAGGGCGTTAAATTGGGCACGGAGCGACAGTGCGACGGCCGTGCTGCTGTTGGGCGCCGCAGCGCTAACCCGTCCAGGA GTACCCTTCCGCCGGGGGATTACCGGATTACATCGGACAGGTCGATCGGGACCCCGCCCCGGGCCGCCCCGGGGGCCGCG GCTAGCCCTGGGCGCAACCCCGGTAAGTCATGTTCATGTTTTAGCGTTATTCTTTCGAAATTGCAATTGGATGTCAACGC GGGAGTGGGCGCTGTGCTGTGGTGGCTCGGGGAGCATGGAGTATCGACGGACGGCCGGGCCACGCCTCGCGCGAGACAGA GCTCCGCTCCCAGCCCACATCGGCCTCTTCTGGAGGTTAGTGGTTCATCTACCTTATTCAGCGTTTTTCAAGTGCGTTTT ATTCTGTGTACCTTATCGCTTCTCGGCCTTTTGGCTAAGATCAAAGTGTAGTATCTGTTCTTATCAGCTTAATATCTGGT ACACTCCGCATTGCGGAGTCAGAATATTAAACTGATTTTTGTAATCCGATGGAGTGTTGGGTGCTTGCACCACCTCTATC ACGGGTTGTCCGGGCATTGCAGTGCCGCCCGGTTCGGCCACTATAATAATAAATCATACTCTCCTCTCTCTCTCTTATCA AGTATCGGCTGGATAACTCGCCTCTGCCGACTTGCGTTAAAACGCACGGCCGCAAGCGGCGCGCGGCGGCCGGCCGCGGG TGCCCTACCCCTCCCCCCTCTCTACTCCGCCAGCCTCTCGTCGCTACGTTACGGCTAACGCTACGCGCCCAGCGGTAAAG ACCGCGTTCGAACGAAAATAAATACGCCAATACGCTCGTCTACTCGCATAGGTAAGTAATCGCTTTCGCAAAGTCCCGCG CGTACAGGTAAGTAATACTTCATCGAGGACAACTTTATGCCGTGGCGTGTTTATCTCGTTGCCGCACGGCCAGGTAAGTC CCGGTAGTGAGTGTAACTTGTCTTAACGACTGTGTAAGGTAGGTATAGGGGGTAGATAGTCTTTGTTGAAGTTTATCCTT ACGGAAAACATGTTTTAGCCCTGAAAAGGGCTGTTTATATAGCAAAGACGCTCGGGTGAACGAGTGAATTTACTTGGAGG ATGTGTACTTGGTCACAGCCTTGGTGCCTTCAGAGACGGCGTGCTTGGCCAATTCTCCGGGCAGGAGGAGACGGACAGCG GTCTGGATCTCCCGAGAGGTGATGGTGGACCTCTTGTTGTAGTGGGCGAGACGGCTGGCCTCGGCGGCGATCCTCTCGAA GATGTCGTTCACGAACGAGTTCATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGGACTTGTTTCAGCACTT TGTAAATGTAGATGGCGTAGATTCCTTCCTCTTACGCTTCTTCTTCTTATCTCCCTTGGAGATATTCTTCTGGGCCTTGC CCGCTTTTTCGCGGCCTTTCCGGACGTTTTGGGTGGCATGGTGTACGTGTGAGCGGTACAAAGACACGGAGCACAGTGAT GCGGACACCAGCCGACTTTCTTATTTATGTAAACGCGGTGCGCAGCCGGCGCGCGCAGGATCGTGCGTGCCGTCCCCCCA CTCCGAGGTGCCCGAAAACGAGCGGCCAATCGCGCGGCAGCAGCGCAGCCAGCAGCGCGCCGGCTGCGCACCACGAATCG TATATAAGCCTAGGTCGACCCTCGCCGAGCATCACTCTCGTGTACTTTCCGGCGTCCTCACGGTCGTCGTCTCGTCGTTC TCTACCCAAACTCTCCAAACATGTCCGGTCGCGGCAAGGGTGGCAAGGTCAAGGGAAAGTCCAAGTCCCGCTCCTCCAGG GCTGGACTCCAGTTCCCCGTCGGAAGAATCCACCGTCTTCTCCGCAAAGGAAACTACGCTGAACGTGTCGGTGCTGGTGC TCCAGTGTACTAGCCGCCGTGATGGAATACCTGGCCGCTGAGGTCCTGGAATTGGCAGGAAATGCTGCCCGTGACAACAA GAAGACAGAATCATCCCCCGTCACTTGCAGTTGGCCATCCGTAACGACGAGGAGTTGAACAAGCTCCTTTCCGGCGTTAC CATCGCCCAGGGAGGTGTCCTGCCTAACATCCAGGCTGTGCTCCTGCCCAAGAAGACCGAAAAGAAGGCTAAGTCGCCTC CTTTGACGGCAACCTCGTTCAATCGAGTACCAAAAAGGTCCTTTTAAGGACCAACAAAACTGTCTTAAAGGACATCCTAC AACAAAGACTTACACTATCCCTCCTACCCCCCTCTCACTATACCCTAGCCGGTCACCCTCCGTCGATTTGGGCTCTTTAC CTTTCGATTTGACCGAGTTAAGCATTTTCGTTTGCGCTTAAGCACGCTTAAGGTCACCCATCGCTTAACGCGACTTATCT CGACGCCCGTGTGCGACACGGACTTTCGACGGCCCGTTGCGTAGTACTCGTCGCCTCTACGACTTTTATTTCGCACGTCA GTCGCTCCGACGTCGCGTTCGTGAGTTAAGCGGCGTTAAGCAAGTTGAGCACGCTAAGCGCGGAGCGGCGAGCGCCTGCA ATCGGGCGGTTAGGCCTCCCGCTCCACACACTGCCGAGCGGGTTGCATACCTGCAAGGCAGTGCGCGGCGGGCACCTCGC CGCGAAATCGCAAAGTACCGCCGTGCGCTTTCGTACATGACCGCTGGGGGTTAAGCGACCACTGGGACGCGTGTGCAAGT GTTGCGAGAGAGGTTATATTATGTTAGGGGAGGATAAGTTAGGTTAGAGACGTCTTTGTCGAAGTTTATCCTTACGGAAA ACATATTTTGGTCCTGAAAAGGACCGTTTTGATTGGTTTCCTCGAAGAGGAAGTAGGGCCAGAAGGTGCTTAACCTCCGA AACCGTACAGGGTACGTCCCTGACGCTTGAGGGCGTAGACTACGTCCATGGCAGTCACGGTCTTCCTCTTGGCGTGCTCG GTGTAGGTGACGGCGTCACGGATGACGTTTTCAAGGAACACCTTGAGCACACCACGGGTCTCCTCGTAGATGAGACCGGA GATACGCTTGACTCCACCACGGCGAGCCAGACGACGGATGGCGGGCTTGGTGATTCCCTGGATGTTGTCACGCAGCACCT TACGATGACGTTTGGCGCCACCCTTTCCCAATCCCTTTCCTCCCTTGCCTCGGCCGGTCATCTTGACAAAGTGCGAAGTG TACTACACGAAGGAGCACGTCGAACTGATGCCTCGCCAGCGGCGCGCCGTCCTTTTAAAGGCTGGCGGCCGCGCGCAGCC CGACGAATCGGGGAGCCGAACGGAGCAGCGCGCTCGGCCAGCCAATCGGCTGCCTGCTCCGCCGCCGCCCGGCAGGCATC GCGCTCCCTACAAAAGAGAGTCGCTGCGGCGGCGCGGGCATCAGTTCGTCGTCGTCAGTCGTCCCGAACACTCTATCGCC ATGGCCCGTACCAAGCAGACCGCAGGAAGTCGACCGGAGGAAAGGCGCCTCGCAAACAGCTTGCGACCAAGGCCGCCCGT AAATCGGCCCCTGCCACCGGAGGAGTCAAGAAGCCCCATCGTTACCGCCCCGGTACCGTCGCTCTTCGTGAGATCAGGCG TTACCAGAAGAGCACTGAGCTCCTTATTCGCAAGCTGCCTTTCCAGCGCTTGGTGAGGGAGATCGCCCAGGACTTCAAAA CCGATCTTCGATTCCAGTCCAGCGCCGTCATGGCCCTCCAGGAGGCCTCTGAGGCTTACCTCGTTGGTCTGTTTGAGGAC ACCAACTTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAGGACATTCAGCTCGCCCGCCGTATCCGCGGAGA GCGCGCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0129400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCCGTACCAAGCAGACCGCTAGGAAGTCGACCGGAGGAAAGGCGCCTCGCAAGCAGCTTGCGACCAAGGCCGCCCG TAAATCGGCCCCTGCCACCGGAGGAGTCAAGAAGCCCCATCGTTACCGCCCCGGTACCGTCGCTCTTCGTGAGATCAGCG TCGCTCTTCGTGAGATCAGGCGTTACCAGAAGAGCACTGAGCTCCTTATTCGCAAGCTGCCTTTCCAGCGCTTGGTGAGG GAGATCGCCCAGGACTTCAAAACCGATCTTCGATTCCAGTCCAGCGCCGTCATGGCCCTCCAGGAGGCCTCTGAGGCTTA CCTCGTTGGTCTGTTTGAGGACACCAACTTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAGGACATTCAGC TCGCCCGCCGTATCCGCGGAGAGCGCGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0129400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREISVALREIRRYQKSTELLIRKLPFQRLVR EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 42 42 - –
PANTHER
PTHR11426:SF224
1 143 143 5.7E-100 –
Pfam
PF00125
1 139 139 1.2E-47
IPR007125
PANTHER
PTHR11426
1 143 143 5.7E-100
IPR000164
SUPERFAMILY
SSF47113
2 140 139 3.65E-52
IPR009072
Gene3D
G3DSA:1.10.20.10
2 143 142 1.5E-73
IPR009072
PRINTS
PR00622
3 17 15 1.1E-61
IPR000164
ProSitePatterns
PS00322
15 21 7 -
IPR000164
SMART
SM00428
34 143 110 3.0E-70
IPR000164
PRINTS
PR00622
41 62 22 1.1E-61
IPR000164
PRINTS
PR00622
65 82 18 1.1E-61
IPR000164
ProSitePatterns
PS00959
74 82 9 -
IPR000164
PRINTS
PR00622
87 105 19 1.1E-61
IPR000164
PRINTS
PR00622
105 121 17 1.1E-61
IPR000164
PRINTS
PR00622
121 142 22 1.1E-61
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0129400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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